LOC120557289 (wnt2b,LOC104945808)


Basic Information

Item Value
gene id LOC120557289
gene name wnt2b,LOC104945808
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23493752 ~ 23504705 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797467.1
CAGTGCGCATCTTCATTCCCGGCTACAGGAGGAAAGGTGCGCACAATGTCTGTCCCATCCTCGGAAACGGTTCTTCCACTCGACTCGTATCTGATTTAAGCGAGTTTTCTTGCTTTCGCTACTGGGTTACAGCATCGGATTCTGCGCTTTACGACCCGCAGCTGTAGTGATATTTAATTCGGCGCGCAACAACTGAGGAGAAAAGGTGAATGTATCGCTAATAAAGGGCTTTTAGATACATCTAAAACGGAGGACTTATTCTGCCAACGCACTAATTACAATCTCCGATGCCAATGAAGATTATGGATGTACTGACAGGAAATCTGTATGgcattattaaatattaactggTGGAGTttaaaagcacttttcctcctTGTGAAGCTCTTTAAGTTCTCCGATGATGGACGGCAGACAATCGTCAAGGACTTTCACACCTGATTGTGCAGCTTTTGCCAACACATGAAGGGAAGAAACATGTTTTGTCTGATGAAATTTCGCCGCTTATCAGACAGCAGCAGGGCTATGGGGATCAGACATGGGTCAAAAATCCAACATCACTCCAAACCCATATCTAAAATATACTTAATTTTTATTTTGCTCCTGCTCATTTTCACACCGAGAGTGGATTCATCGTGGTGGTACATCGGAGCGCTGGGTGCTCGGGTGATCTGCGATAACATTCCCGGCCTGGTGAATAAGCAGCGGCAGCTGTGCCAGCGGCACCCGGACCTGATGCAGTCCATCGGTGAGGGAGCCAAAGAGTGGATCAAAGAGTGCCAGCACCAGTTCAGACACCACCGCTGGAACTGCAGCACGCTGGACCGGGACCACACTGTGTTTGGCAGGGTGATGCTGCGAAGCAGCCGTGAGGCAGCGTTCGTGTACGCCATCTCGTCAGCAGGAGTGGTCTACGCCATTACCAGGGCCTGCAGTCAGGGGGAGCTAAAGATCTGCAACTGTGACGGCCACAAGCGAGGGCAAGCTAGCGATGACAAGGGCAAATTTGACTGGGGTGGATGCAGTGACAACATCAACTATGGCATAAAATTTGCCAAGGCCTTCGTAGATGCTCGAGAGAGGATGGTGAAAGACGCTCGCGCGCTGATGAACCTGCACAACAACCGGTGCGGTCGGATGGCAGTAAAGCGCTTTATGAAGCTGGAGTGCAAGTGTCATGGGGTCAGTGGCTCCTGTTCTCTGAGGACCTGCTGGCTGGCGATGTCAGACTTCAGGCGAACTGGAGACTACCTTCGCAAGAAGTACAACACAGCCATCGAGGTGACCATGAACCAGGACGGGACGGGCTTTATGGTTGCTGACAAGGACTTCCAGGGAAGCACCAAGAATGAGTTAGTGTATGTCGAGAACTCACCAGATTACTGTCTCACAGACCGCTCAGCAGGCTCCTTGGGCACAGCAGGCAGAGTGTGCAACAAGTCCTCCAGAGGCACGGACGGCTGTGAGGTCATGTGCTGTGGGCGGGGCTACGATACCATGCGTGTCAAACATGTCACCAAGTGCGAGTGCAAGTTCAAGTGGTGCTGCGCTGTGGAATGCAAAGACTGTGAAGACTTGGTGGATGTTCACACCTGCAAGCCTCACAAGCGACCCGATTGGCTGGACATAACCTAACACGGAGACCTGACCAATCACAAGTCACCACTGACTCAATAACCTGCGTGCTAATGACTGCATTTTGTTATGGGATATATAAATGGGATCTCTTAACTGTAATACCTCTGGCTTATTTTTGATCCTTTGACACTTCCGGAAGCAGAGACTTCACAGACATTGATGCTAAACTGGAAATTAGGCCCAGTTACTGATCGTGCTGCTTTAATAAGTGTTTCTGAGAACAATTTGTTGAgcttttttttaagacaaactTTGAATCTTTGATACAAAATGGCtgaatgttgttttattctgttGTAAATACACCcttcagtgtttcccctaggTT

Function

symbol description
wnt2b Predicted to enable cytokine activity and frizzled binding activity. Involved in animal organ development and canonical Wnt signaling pathway. Located in intracellular membrane-bounded organelle. Part of collagen-containing extracellular matrix. Implicated in congenital diarrhea. Biomarker of endodermal sinus tumor and teratoma.

NR:

description
PREDICTED: protein Wnt-2b

GO: NA

KEGG:

id description
K00182 WNT2; wingless-type MMTV integration site family, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797467.1 True 1966 mRNA 0.49 5 23493752 23504705

Neighbor

gene id symbol gene type direction distance location
cttnbp2nla cttnbp2nl,LOC102311171,LOC100709543 coding upstream 5765 23473348 ~ 23487987 (+)
LOC120557228 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding upstream 186686 23282142 ~ 23307066 (+)
timm17a timm17a,LOC102789540 coding upstream 213023 23274429 ~ 23280729 (+)
lmod1b lmod1 coding upstream 222197 23266849 ~ 23271555 (+)
shisa4 shisa4,LOC102788956 coding upstream 227889 23256518 ~ 23265863 (+)
tox2 tox2,LOC104948894,LOC108231505 coding downstream 66897 23571602 ~ 23665613 (+)
rbck1 rbck1 coding downstream 321021 23825726 ~ 23835968 (+)
LOC120558070 cdh22 coding downstream 467688 23972393 ~ 24165819 (+)
gcnt7 gcnt7,LOC102795321,LOC102207891 coding downstream 936607 24441312 ~ 24449369 (+)
eya2 eya2,LOC103355465,LOC102207428 coding downstream 986154 24490859 ~ 24521308 (+)
G41231 NA non-coding upstream 125401 23367385 ~ 23368351 (+)
G41220 NA non-coding upstream 135667 23337333 ~ 23358085 (+)
G41207 NA non-coding upstream 212559 23280937 ~ 23281193 (+)
G41126 NA non-coding upstream 238225 23254942 ~ 23255527 (+)
LOC120557222 NA non-coding upstream 260794 23232172 ~ 23232958 (+)
G41291 NA non-coding downstream 331993 23836698 ~ 23836903 (+)
G41308 NA non-coding downstream 342088 23846793 ~ 23847938 (+)
LOC120556870 NA non-coding downstream 363666 23868371 ~ 23870584 (+)
G41346 NA non-coding downstream 771355 24276060 ~ 24276910 (+)
G41354 NA non-coding downstream 914496 24419201 ~ 24421883 (+)
itga7 itga7 other upstream 1501141 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 2150041 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 3345062 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 3570203 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 3634411 19851548 ~ 19859341 (+)
cbfa2t2 cbfa2t2 other downstream 230243 23734948 ~ 23771932 (+)
znfx1 NA other downstream 343342 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 1050820 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 1703451 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 2177702 25682407 ~ 25690935 (+)

Expression


Co-expression Network