tshba (LOC100534562,LOC102782486)


Basic Information

Item Value
gene id tshba
gene name LOC100534562,LOC102782486
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 25717205 ~ 25719000 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797472.1
CATCATCAGGCCTGCAGGTGCCCGCACTTCTCGAGCAGGTCCAAAATTGATTGGGCAAAAATAAGATTGCTTGACATGGAGACCGCAGTGTTCACCTGCTGTCTCCTTTTTCTTTGGTTCAGCCCAGCTGTTCCCATGTGTTTACCCACTGACTTCACCCTGTATGTGGAGAGGCCAGAGTGTAATTTCTGTGTGGCGATCAACACAACCATCTGTATGGGATTTTGCTACTCaaggGACAGCAACATGAGGTATAGACTCGGCCCACGCTTCCTTATCCAGAGAGGCTGTACCTATGACAATGTGGAATACCGCACAGCCATACTGCCCGGCTGTCCTATCGCCGCTAACCCCGTCTTTACCTACCCAGTAGCTCTCAGCTGCCACTGCGGTGCCTGCAGGACTGACAGCGATGAGTGTACACACAGGGCCAGCATGGACGGAGCTAGGTGTACCAAACCAGTGACACGTATCTACCCGTACCCTGGCCAGAGCAACTACATGATCCCTTTCTGATTCATCTGTTGTTATCAGcttgtctctttctttttctgttaaaaTGACCAAGCTGAAACTGCATGATTCATGAATGTTTTAAGAAGAGACAAACGTAATCATTTAGCATGTGATGGATACGGTGACACATCTACACTGTCTGTACTGGTATTGTACCAGCCTGTTTTATTGTGCTTTTGTTGCCCAACGTGTCTGTGCTGCAGCTGGCTTCTCCAGTTACAATGGTGGGGGGTTGATCCTAGTGCGTTCTTTTGTCTGTGTCATTATTCATCCTCCTGTACTCGTGTGTGTGACTCCCAGACTTATTATGTTTACTCTGAAAGGGATACTCTGAATGCAACTCAATTAAAGCTGAAGTCTCTAAATAG

Function

NR:

description
thyrotropin subunit beta precursor

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05251 TSHB; thyrotropin subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797472.1 True 884 mRNA 0.48 3 25717205 25719000

Neighbor

gene id symbol gene type direction distance location
sycp1 NA coding upstream 14837 25693331 ~ 25702368 (+)
tafa3a fam19a3,LOC106517667,LOC104918365,LOC102289964,LOC101471348 coding upstream 193604 25405480 ~ 25523601 (+)
mov10a LOC103356046,LOC100704454,LOC101471942,LOC102210509,LOC102290565 coding upstream 371429 25331148 ~ 25345776 (+)
capza1a LOC104945687,LOC106582739 coding upstream 387538 25323394 ~ 25329667 (+)
LOC120558032 NA coding upstream 596839 25114918 ~ 25120366 (+)
slc25a55a LOC104918372,LOC102313117,LOC102207676,LOC102783067,LOC100695863 coding downstream 3791 25722791 ~ 25728382 (+)
LOC120558083 LOC103356159,LOC100696388,LOC101468283 coding downstream 111111 25830111 ~ 25831910 (+)
LOC120558084 kcna2,LOC104918376,LOC107385044,LOC101171484 coding downstream 125464 25844464 ~ 25852160 (+)
LOC120558086 LOC104941373 coding downstream 159956 25878956 ~ 25883081 (+)
LOC120557320 tulp1 coding downstream 204207 25923207 ~ 25935275 (+)
G41630 NA non-coding upstream 170365 25546509 ~ 25546840 (+)
G41629 NA non-coding upstream 170905 25545917 ~ 25546300 (+)
LOC120558141 NA non-coding upstream 216234 25499083 ~ 25500971 (+)
G41570 NA non-coding upstream 402946 25313719 ~ 25314259 (+)
LOC120558031 NA non-coding upstream 604029 25099287 ~ 25113176 (+)
G41694 rplp2,LOC104941383,LOC104918380 non-coding downstream 166222 25885222 ~ 25887733 (+)
LOC120557323 NA non-coding downstream 202754 25921754 ~ 25923063 (+)
G41746 LOC103355883,LOC106954216,LOC104941313 non-coding downstream 282481 26001481 ~ 26002751 (+)
G41754 LOC102788777,LOC107089146,LOC101487148,LOC104918388,LOC100698513 non-coding downstream 307555 26026555 ~ 26027210 (+)
LOC120557409 NA non-coding downstream 503077 26222077 ~ 26252094 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other upstream 26270 25682407 ~ 25690935 (+)
slc12a5a LOC103355988 other upstream 406652 25208156 ~ 25310553 (+)
bloc1s1 bloc1s1,LOC102796612 other upstream 1156887 24555525 ~ 24560318 (+)
znfx1 NA other upstream 1849693 23848047 ~ 23867512 (+)
cbfa2t2 cbfa2t2 other upstream 1945273 23734948 ~ 23771932 (+)
LOC120558082 kcna10,LOC104941363 other downstream 48092 25767092 ~ 25872919 (+)
LOC120558088 LOC104941431 other downstream 185769 25904769 ~ 25907738 (+)
G41825 NA other downstream 549602 26268602 ~ 26273315 (+)
G41850 rps10,LOC102793608 other downstream 823507 26542507 ~ 26548799 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other downstream 933851 26652851 ~ 26764737 (+)

Expression


Co-expression Network