elf3 (elf3)


Basic Information

Item Value
gene id elf3
gene name elf3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 4377318 ~ 4386408 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797521.1
CAGGTGGCTAAAAGAGGCAGAGAACCAGGCACTGATACTTGAAAAGTGGAAATCATACAACGCAAGCTCATACTGCTGCAGATTGTCCTGGAGCAAGACAACCCTTTGCATCATACTGTGGCTCGTGCTGTAATCAGTGCCATGTCATCCCCGTGCCTCAGCAGCATCTTGACCAACGCCAACATCACCATGTATCAGACTGGCGGCCATGACGTCCCGCCGCAGCTGCCCAGCATCAACACCCTGCAGATCAGCAATTCAGCATACAACTCCAACATAAGCGgtcagtGGTACCGGGAGATCAGCCCTCACTTCTGGACGGCAGACAACGTTCTGGACTGGATCAGCGATCACGTAGAGGGCACCAAGTTTGACGCGAGCACCCTAAGTCTGGCCTACTGCGCCATGGACGGCCCTGCTCTCTGCCAGATGAGCCGGGAACAGATGATCGGGCTTTTCGGCACGCAGCTCGGCCCACACCTCCAGCAGAGTCTGCAGGATCACAAGACCAAATATGAGCTGCAGAGCCTGTCGGGACCGGAGCTGAGCGAGACCTGCCAACTCCTGGACAACTTCCTGGACAACCTAAACTTCCCTTTGCTCAGCACCATTAGAATTGGCCAAGGTGAAGGCTTTGTCACCAAGAAGGAGTTTGACTACAGGGATGATTGTATTAGTCTGAACCTGGAGCCCATGCCATCTCTGGGAGACACAGAGTACCTGTCTGATAACCAGTCTGACAGCGAGTACAGCTCCTCCTCCAACAGTGGCATGTTTGACTTAAGCCTCGGCTCACCCGAGTCTGGCAGTGGCGAATCAGACCCGGAGTTCTCCTTCCCTCTGATTTCAAAGGCGAACATcaaaacagagaaagaagagTGTCGCCTGAAGCGACCACGGGGTCGACCTCCCAAAGTCAGCAGAGAgcacggcagcagcagcagcagcatttatGGCAgtccaaagaaaaacaaacacgCTCCTCGTGGCACTCACCTGTGGGAGTTCATCAGGGACATTCTGATCCACCCAGAGAAGAACCAGGGCCTAATGAAGTGGGAGGACCGCCGCGAGGGTGTATTCAAGTTCCTCAAGTCCGAGGCCGTGGCTCAGATGTGGggccagaagaagaagaacagcaGCATGACGTATGAAAAACTCAGCCGGGCCATGAGGTATTACTATAAAAGAGAAATCCTGGAGCGAGTTGACGGCCGGAGGCTCGTATACAAATTTGGAAAGAACTCTAGCGGCTGGAAGATGGAGGAGCTTGGCATGGGCATGTGAGACGTCAGTCACTAGAAACCAAAAAGCCTTGCTGCCCCCAGACACTAACTTCCTCTTGAAAGGAAGATGTTGCAGAAAATGTAAGCCATTGTTTTTGGCTCTAGTAGGTTTTATGAACCGATATTAATGTTGTacctgttttgtgtatttgaTTGCCACAGCAAAGCTTTACTATGTGCGCAGTAACTTAAATGGACATCGTTTTGGATGCTTGTGAGTTTCGGTAAGCACttagagtcttttttttttttacaaatgtacaGAATTCCCTTTTAATGTTTCTTTAGTGATGCAGGACTAACTCATCCTCATCTGTCACTATGGAGTTTTCTTTGGTATACGGGCGATAATGACTATTGTGGCACTGAAAACGTTATATTTCTCGTTTCTTACTTTCTTATTACTGTCTTGTTATTCAAGAAGGGTACTAATGTCACCATCGTATGtccatgtaaatgtaaaatgagTTGTGTATCTGAATGTAGTACCAAATTTGGAAATGTGTTCTTCTAAAGGTTAAGCTCAAAAGTGAAGGacaaagacagagcagagagaacTAGGGTGAAATAAGTCATGTTAATTCACATTAATACAGTAATGATGTGCACTACATGTCTATCGGTATCACTTATTATAAAGTGTGTTTACACAGTGTAAAAAGTAGTTTTGGGAGTAACTATGTcacatgtttgttttaatcagTCGGAAATTAGTTGCACGccgtttctttttctttttttaacgtGTTAATGTGATTAATCCATTTTGGATTGATAAATGTATGTTTATACTATACCATTTGTAATATCTTTTAATTAATggcatattgtttatattgaaaaaatacattttgacatgtaCTTGCTGTTTTGGtattgacttttattttttaatgctgTAATCTTGTTGATATATCTGTAACCATCATGAAGGATGGAAGATGTGAAACTGGAGTAAAGATGTGAGTGTTAAACTCGCAAGATACAATTATCA

Function

symbol description
elf3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including inflammatory response; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in post-vent region. Orthologous to human ELF3 (E74 like ETS transcription factor 3).

NR:

description
ETS-related transcription factor Elf-3-like

GO: NA

KEGG:

id description
K09429 K09429, ELF3; E74-like factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797521.1 True 2280 mRNA 0.45 9 4377318 4386408

Neighbor

gene id symbol gene type direction distance location
fbln2 NA coding upstream 15675 4272942 ~ 4361643 (+)
hdac11 hdac11 coding upstream 134818 4215524 ~ 4242500 (+)
cfap92 NA coding upstream 464098 3894305 ~ 3913220 (+)
nuf2 nuf2 coding upstream 546373 3807172 ~ 3830945 (+)
c4h1orf50 LOC103374819,LOC106909683,LOC106955718 coding upstream 611278 3759494 ~ 3766040 (+)
LOC120558135 cacna1s,LOC103386795,LOC101064508 coding downstream 40385 4426793 ~ 4467714 (+)
optc LOC104947866 coding downstream 85756 4472164 ~ 4479342 (+)
LOC120556802 NA coding downstream 101194 4487602 ~ 4488595 (+)
LOC120556803 NA coding downstream 106185 4492593 ~ 4493168 (+)
LOC120556767 NA coding downstream 110396 4496804 ~ 4497837 (+)
G35834 NA non-coding upstream 7097 4369919 ~ 4370221 (+)
G35833 NA non-coding upstream 8268 4368691 ~ 4369050 (+)
G35739 NA non-coding upstream 547377 3772611 ~ 3829941 (+)
G35741 NA non-coding upstream 585345 3790004 ~ 3791973 (+)
G35737 NA non-coding upstream 608930 3767852 ~ 3768388 (+)
G35925 LOC104957620,LOC100698470,LOC102194894,LOC101473847,LOC102310675,LOC102787480 non-coding downstream 219052 4605460 ~ 4610060 (+)
G35941 NA non-coding downstream 224130 4610538 ~ 4613004 (+)
G35942 NA non-coding downstream 229485 4615893 ~ 4617397 (+)
G35958 NA non-coding downstream 304647 4691055 ~ 4694565 (+)
G36022 NA non-coding downstream 413563 4799971 ~ 4800984 (+)
G35791 LOC101072424,LOC104921976 other upstream 427190 3948834 ~ 3950128 (+)
epha8 epha8,LOC102791453 other upstream 787706 3453600 ~ 3589612 (+)
G35618 NA other upstream 1018498 3244231 ~ 3358820 (+)
G35578 NA other upstream 1360193 2930924 ~ 3017125 (+)
G35534 NA other upstream 1629546 2747220 ~ 2747772 (+)
G35921 NA other downstream 101127 4487535 ~ 4585475 (+)
LOC120557928 NA other downstream 143425 4529833 ~ 4532862 (+)
cdk5rap1 cdk5rap1 other downstream 525291 4911699 ~ 4934164 (+)
G36156 LOC103374102 other downstream 1534516 5920924 ~ 5924400 (+)
rybpb rybp other downstream 1648664 6035072 ~ 6055216 (+)

Expression


Co-expression Network