wdr1 (wdr1,LOC102791765)


Basic Information

Item Value
gene id wdr1
gene name wdr1,LOC102791765
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10204986 ~ 10216132 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797563.1
AGACAGGCAGAAGGAGAGCTGCTCTCGCTTCCGTGTTTGTGTGATCAGGGAGTGCACAGCCGGAGGAGCTTAACTGTTTCATTCATTTGTAAAGAGTAACGTTAAGAAAGTGGCCAGCAGGGAAAATGTCGCTTGAACTGAAACATGTATTCGCAAGTCTCCCACAGATGGAGAGGGGAGTTGCAAAAGTGATTGGCGGTGATCCCAAAGGCAACAACTTCCTGTATACCAATGGGAAGTGTGTCATCATCCGGAACATTGAAAATCCGGCTATAGCAGACATTTACACCGAACATGCCCATGCAGTTACTGTTGCCAAGTATGCCCCCAGTGGATACTACATTGCATCCGGAGACGCGTCAGGAAAGATCCGTATCTGGGACACCACCCAGAAGGAGCACATTCTCAAGTACGAGTACACCCCTATTTCAGGCAAGATCAAGGACATTGCATGGACCGAGGATAGCAAGAGGATTGCTGTCGTTGGGGACGGACGAGAGAAGTTTGGAGCGGTGTTCCTGTGGGACTCTGGCTCCTCAGTGGGGGAAGTTTCCGGCCACGCCAAATTAATCAACAGTGTTGACATAAGGCAGAAACGCCCTTACCGCCTTGCCACTGCCAGTGATGACACCTGTGGGTCCTTCTTCGAGGGGCCTCccttcaagttcaagttcacaTTACGAGATCACAGCCAGTTTGTCAACTGTGTTCGTTTCTCTCCAGATGGAAGTCGGTTTGTCACAGCTGGCGCTGATGGCCAGATATTTGTCTATGATGGAACGAATGGTGAGCGTGTTTGCTCACTGGGTGGAGAGAAGGCCCACAAAGGAGGAGTATATGCTGTCAGCTGGAGCCCTGACAGTTCCCAACTGATCTCTGCCTCAGGGGACAAGACGGTGAAACTCTGGGATGTTGGTGCAGGTACGGCCGTCACCACCTTCAACCTGGGCACTGATGTGACAGACCAGCAGCTGGGCTGCCTGTGGCAGAAAGACCACCTCCTCACCATCTCCTTGTCGGGATACATCAACTACCTGGACAAGAACAACCCTGGCCGGCCCATACGCACCATCAAGGGTCACAGCAAATCCATCCAATGTCTGACAGTTCACAAAAAGGATGGGCGGCCATATATCTACTCAGGGAGTCACGATGGACACATTAATTACTGGGATGCAGAAACCGGAGAGAACGACTGCTTCTCGGGGAAGGGCCACAGCAACCAGGTGAGCAAGATGGTGACCGACGAAGCCAACGAGCTGGTGACATGCAGCATGGATGATACACTGCGCTACACCAACATCAACAAGACGGAGTACAGTGCCTCTGATGTGGTGAAGATGGATTTCCAGcctaaaagtgtgtctgtagcAGCAGGAGGGCTGTCCCTGGCTGTGTGCATTGGGCAGATTGTCTTGCTGAAAGATAAGAAGAAAGTCTTCACATTGGACAATCTTGACTATGAACCAGAGGTTGGAGCTATCCACCCTGGGGGCACCACTGCTGTTGTGGGCGGAGCAgATGGGAAAATCCATCTGTACTCCATTCAGGGCAACACTCTGAAGGACCAGGGTAAAACTATCGAGGCTAAAGGGGCGATCACAGACATGGCCTACTCTAATGATGGAGCCTATCTCGCTGCCATAGATGATAAGAAAGTTGCCACAACTTTTACTGTGGCTGACGGCTACTCGGTCAAAGATGAGTTTTACGGACACCATGCCAGAACTGTAACTTTGGCCTGGTCACCTGACAATGAGCACTTTGCGACTAGTGGGATGGACATGATGGTGTTTATCTGGACAATTGGTGATCCAGACAACAGGATTAAGCTGGCAGACACTCACCGGTTGCACCATGTTAGTGGCCTGGCCTGGGTCAATGAGCACACTCTAGTCACCACCTCCCATGATGCCAGCATCAAGCAGTGGACTGTTAAATACTGAGCTGCAAGCAGACAAACATCCACATCTCCAGGGACAAGGACTACTGTAGAATTCAATCTTTccttctgttttcattttttttttttttttttttaaactgtattttCACTATCTATACGGTGTTCTATGCGGTCTGTAAACATCTGAAATTGTGAATTGATATGGCTGGGGAAAGCTCCCCTAAAAAATAATCCAAGACACGTCTCTTTCATGCAGATAACCTCAACTTACACGGAGacaaatatttgaaatatatgATGTAACCACGAGTTGTTTTACATCTCTTTGAGCTTGATGGACCCACAGTAATATTTGTAAGCTCAACATTCCATAGGTAATAGCTTTCACTCAGTTTAAACCAAAATTCTTGTCTGTGGTTTGGCTCAATGCATCCTAACTTAATGGATAAACTAAAAGCgagtttcttctttttttttttttaaatcaacaatCATGTTTGAAAGAAATTAAACCTTTTGGTTTTAAGGGGTTGGGTGTTTTGCTTTGTCTTAGGTTTCATACTTTTATGTTTCACAACTCTTCCTGTTGGACTCGGGAGCAATAATGGGAACT

Function

symbol description
wdr1 Is expressed in ectoderm; epidermis; nervous system; and solid lens vesicle. Orthologous to human WDR1 (WD repeat domain 1).

NR:

description
PREDICTED: WD repeat-containing protein 1

GO: NA

KEGG:

id description
K24736 WDR1, AIP1; WD repeat-containing protein 1 (actin-interacting protein 1)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797563.1 True 2519 mRNA 0.47 15 10204986 10216132

Neighbor

gene id symbol gene type direction distance location
slc2a9l2 slc2a9 coding downstream 3235 10101729 ~ 10201751 (-)
zbtb49 zbtb49 coding downstream 191267 10007330 ~ 10013719 (-)
LOC120558214 synpr,LOC104965753 coding downstream 209231 9967082 ~ 9995755 (-)
LOC120558233 NA coding downstream 242443 9957831 ~ 9962543 (-)
LOC120557887 NA coding downstream 247614 9935855 ~ 9957372 (-)
cast NA coding upstream 78403 10294535 ~ 10333383 (-)
rfesd rfesd coding upstream 205712 10421844 ~ 10424787 (-)
ube2r2 ube2r2 coding upstream 218068 10434200 ~ 10442069 (-)
nop56 nop56 coding upstream 275184 10491316 ~ 10497248 (-)
LOC120558246 NA coding upstream 276158 10492290 ~ 10492357 (-)
G37165 NA non-coding downstream 144579 10059804 ~ 10060407 (-)
G37159 NA non-coding downstream 160551 10044168 ~ 10044435 (-)
G37158 NA non-coding downstream 161164 10042247 ~ 10043822 (-)
G37146 NA non-coding downstream 188262 10015379 ~ 10016724 (-)
G37145 lyar,LOC102793231 non-coding downstream 189933 10013727 ~ 10015053 (-)
G37260 ptpra non-coding upstream 36026 10252158 ~ 10252553 (-)
G37258 NA non-coding upstream 41127 10257259 ~ 10270411 (-)
G37245 NA non-coding upstream 76966 10293098 ~ 10302511 (-)
G37276 NA non-coding upstream 93977 10310109 ~ 10311154 (-)
G37305 dcaf12,LOC102784774 non-coding upstream 237829 10453961 ~ 10456420 (-)
LOC120556768 LOC104965754,LOC103359409,LOC102210396,LOC101479743,LOC102082439,LOC102300053 other downstream 198813 9998996 ~ 10006173 (-)
G37045 lrig1 other downstream 809416 9394739 ~ 9395570 (-)
LOC120558079 fam19a1,LOC101482978,LOC107385433,LOC108244096,LOC103386186,LOC106518519,LOC101163164,LOC102209545 other downstream 1171319 8906439 ~ 9033667 (-)
mustn1b mustn1,LOC107385427 other downstream 1582164 8619087 ~ 8622822 (-)
LOC120557774 ucn2,LOC104952568,LOC108241195,LOC106518500,LOC100704776 other downstream 1790053 8412726 ~ 8414933 (-)
rhobtb3 glrx,rhobtb3,LOC102786935 other upstream 171785 10387917 ~ 10419906 (-)
tpgs2 tpgs2 other upstream 316394 10532526 ~ 10536353 (-)
fam219aa fam219a,LOC101484940,LOC100701621 other upstream 716103 10932235 ~ 10943639 (-)
LOC120557925 tmem233 other upstream 766938 10983070 ~ 10988818 (-)
G37432 LOC106915059,LOC106958204,LOC102221633,LOC103464975,LOC100700174,LOC101482873,LOC102210230 other upstream 835167 11051299 ~ 11053085 (-)

Expression


Co-expression Network