LOC120557333 (evc)


Basic Information

Item Value
gene id LOC120557333
gene name evc
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11361406 ~ 11375812 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797567.1
GCTCTCCTGTCTTGACGCAGCTCGCTTCTCATCTTAAATCTCCGTACACCCATTGGTTCCGAGCACCAATACATGtcgttttgggggaaaaaaagttttgcTGGAAGAAGTCGTTTCAAATTGTAGGTTGCTTATCTatgtttcaaaatgtaaaacctTTTAGAGCGTAACACGTTGAAAATCATATgagattatttttacagtccGTGTTAAGTATGCGAGCAAGAAATTAAATCGTAAagagtaagctaacgttactttcCTTGAGAAAAGTTGTTAGCTAACGTAAGATGTTACAAAATGCTAACATTCATAACGTTAGTTGTCATAACGTAGCTacatgaaaaatgacagagcaGTGCCTGTTGGAGAGATGTCGCACtgatgtgttggtcagtttctCCGAGTCGCTGCACATCTACACAGGGCTGTTAACAGTGGCTACAGTGTGTGGAGGGCTTTCGGGAATATTAGCTGTTGCTCTTTTGTACGTCTTCTGTCTGAAGCCGTTGCTGTTGACGAGACAAGGTTACAATGCAAGGCGGCTGCTTGAACCTGACAACAACCAAAGTGACCATGTCAGTAACGGCAGAAAGGAGGCTCCAATAAGTGGCACATCACATGACAAAGAGAAGAAGCAGCCACCCATGAACAGTGATGTGGCTGCATTTGCATCCAGAGCAAAGGTGGTTTATCCCATCAACCAAAAATACAGACCTTTAGCAGACGGAGCGTCCAATCCATCACTGCATGAGCACTCCAAGTTGCCAGCAATGCCTAACGATGAGTCATCCTCCTCCATGGACGGAGAGTCTCTGAGCCAAGAGCAGGACAACGACGACAGCAGTCAGTTTATCTCCTCCTCGGTGGTCCCCAAGAGCCTGCAGAACCAGAGCTTCACCAGAGTCTCTCACTACCCTCGCTCACTGACACAACCAGATTTTGGGGGCAGGATCAGCCTTTACTGTTTGGCCCTGCAGGATATACAACAACATTGCTCCCAGCTTCAGGAAGAAAAATGTCTGATGTTTCTTCAAATGGTGAAAATAATATTCAGCTGTCATTTTCCAAAAGACAAATGTGCTGCTGACTTCTCCAAAAATATTCTTCAAATGCAAGAAAAGGAACTGAATGAGCTGAAGAAACAGTTGCCAACAAGCCACACTGCCAGCGAGAAAAATTATGACACTCCCTGTACTCTGGAAGAAATAGAGAGAGCCCAAAAAGATTTTCTTGAACGTGGCCTTCAAGTGTCCAGACGTTTCAGCAAACAGGTGGAGGACTTGTGCCAGCATCTGCTGAAGAAGCCCAGCATTTTCTCTCCAGATGAAGCCCAGGGTGtgattctctctctcatccAGACTCTTCTGTTAGTAGAGAACCATCTGATGAACACACAAGAAGCTGATCTTAAGAGGATCCAGCAAAAGTTGTTGTGGTGGGAGGAGCTGACGGGGCTTCTCCAATCCCAACCTGCCTTGCTAAGGCTGGAAGTGTCTCTGAGGCAGGGCTTGATAGCAACAACACTGGAGCAGCTGACGAGTGATGACGTCTTGACCTTTAGCCACATGGAAAAGATACTTTCAGAGGTCCAGGCAACTCTGACCGAAGGCCTTCAACAGTGCACAGAGGAGTGTACAAGGAAGACGAAGGAGCTGGTGAATGACAAGTGCAGCAGAATGGAGTCCAAGAAGAAGAAGCTTTTGAGGAGCCAGACCAAGGAGAAGAGCTGCGCCCTGGAACTGAGACAGCCTCACGGTGACCTACAGCAGCTCACCAAGGTGTACCAGGAGCTGCTGATGAAACACAGACAACAGATTTCTGACTCGGAGCAGCAGCAGGACAACAGGGTGGCTGAAGCCCTCTGTGACCATTGGAAGAAACTCCGTGCCTCCTGGTCAAAGAGGCTTGGAGAGCTGGCCAAGGACATTTTCCTCACCGCTGTCCCTGCCCAGTCAAAGGTCTCTGCTGAGCGCTGCGAGAATCTGTGGTTGGATCTGGAGCAGGAGCTGGTTGCACAGCTGCAGCAGGCAGAGTGCACTACCAAGGTGCAACTGGAGGACATGAGGGCTCAGCTGGATAAAGATGGACAGCTGTGGAGTGAGGAGATGGCTCTGGTGCAGGCCTGTCTCAAACATCTGAGCGAACAGCAGATGACAATCCTGCGAGCCATGTTGGCCAGACAGAGCTACACACTCAACAGCAACGTGTGGAAGTTGATAGAGAAGAAACATGAGCACCTGTTGGTGGCGGTGCAGAGGTACTTTGTGGTCAGGCACTTCTGTTTGCACATGCTGAAGGAAATGAGGCTGTCCAAGCTGAAAGCACTCTCTCAGACTGATTTCAGGGCTGTGCTAATGGAAGATCCCAGTAAAAGCCAGTCCTGTGTCAATTCAGCTCTCAAGAATAGCAGTGCCAGCCTAGCAGAGAGGCATCTGGGTCCAGAGAGTCAGCTGGTGGGCCACAGCTTCCAGCAGGAGTTTCTGTCTGAACTGGAAACAGGGACGGAGCTTCTTCAGAGCCATGCACAGCTGGTGTTGGGCAACGCCCTCAGCCACGCCATCCAACAGATGATGGAGACCCCACCCACTGAACCGCAGACCTCTCCCAAACAGGACGATGGCTTGAAGCACTACCTGACAGAGGCTGCCTCGGAGAGTGTGTATGTGACCAAAGATTCTCTCACTGCACTGGTCCAAAGCTACTATTCCCACCTACAGGACATCATCAAGAAATTACAGCAGGATCAGTCAAACATAAACCACGAGGTGAATGAGAACCATGAGAGGAGCAGTCAGCTGAACAGATCCTTGCTGAGGGAGCTGGTGAACTGGGGCAAAAAACCCAACTCGGCTGAGTTTCAACAGAGGGTTGAACTCCACAAAAGGAGGGTGTTGGAGCAGTGTGATCTGGACCAGGAAACGATATATGAGGAACTGAGGTGGAAGAAAGTAGCCCAGGATCAGAACATGGAAAAGATCAAAGCCCAGCTGCTGGAGGCAGAAGAAAGCTTCATAACTGAGCTGGCAGCCTTGGCCCGGGTCTCTCTCCACAGCCCAGACCCAGAACCCAGCGGTGAGGAGGACAACACTGGTAATGAGAGTGCTACTATATTGGACCTGTTGTCCCTGAACCCAGCATTAGATCCTGCCTTGAATCCTTCACTGACCCCAACGATTGTAACTCCAGTGGTGAAATCAAAaccaaagaagaaaagagaacgAGAATCTCATCTCAGCTGAAATCTTAACACAGTACTGTTCACATATTCATGCAGTCATGTCCTGTAAAAAAGTTTACTCTTATTATAGTTGGTGCATCAGGAAGTAATGCCACTACTGGTCTGCTGGTACCAATTGTGTTGTTAGGAAGGTACCTCAGCTTTGTTTGCATTAAGCCAGAGGGATCTGTCCTAATTTATGTATAAGTGGACTGTCTAGtctaatttaaaattttctAGAAGTGTGCTTGAATTAGGTTACTGAAATATTGCAATGGtgacaaaaacaatgtatttttctCAATTAGTTGGTATTTTTGTAAATTCCATGTACTGTCaaaaatccaataaaataaCAAAGCAGATTATCTTTTTAAtgcatta

Function

symbol description
evc Predicted to be involved in endochondral bone growth and positive regulation of smoothened signaling pathway. Located in cilium. Implicated in Ellis-Van Creveld syndrome and Weyers acrofacial dysostosis.

NR:

description
PREDICTED: ellis-van Creveld syndrome protein

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process

KEGG:

id description
K19605 EVC1; ellis van creveld syndrome protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797567.1 True 3604 mRNA 0.47 20 11361406 11375812

Neighbor

gene id symbol gene type direction distance location
msx1a msx1 coding upstream 28760 11330556 ~ 11332646 (+)
LOC120558115 NA coding upstream 95336 11263510 ~ 11266070 (+)
LOC120558172 LOC104927939,LOC104961953,LOC100699369,LOC102798792,LOC103359250 coding upstream 118041 11236707 ~ 11243365 (+)
aggf1 aggf1 coding upstream 134824 11219389 ~ 11226582 (+)
r3hcc1 LOC104945372 coding upstream 193600 11156708 ~ 11167806 (+)
LOC120557335 LOC103359258,LOC101476783 coding downstream 723 11376535 ~ 11382180 (+)
myl9b LOC100697131,LOC101062217,LOC105901900,LOC103386121,LOC106565219 coding downstream 517778 11893590 ~ 11905754 (+)
LOC120557971 kiaa1755 coding downstream 705293 12081105 ~ 12111841 (+)
tgm2b tgm2,LOC103354993 coding downstream 738196 12114008 ~ 12127710 (+)
eif4ba eif4b coding downstream 905865 12281677 ~ 12297035 (+)
G37528 NA non-coding upstream 1158 11359773 ~ 11360248 (+)
G37527 evc2 non-coding upstream 5046 11355629 ~ 11356360 (+)
G37526 NA non-coding upstream 6663 11354276 ~ 11354743 (+)
G37524 evc2 non-coding upstream 11633 11349550 ~ 11349773 (+)
G37523 NA non-coding upstream 12038 11349136 ~ 11349368 (+)
G37553 NA non-coding downstream 32164 11407976 ~ 11416351 (+)
G37560 NA non-coding downstream 45711 11421523 ~ 11421722 (+)
G37561 NA non-coding downstream 46430 11422242 ~ 11422899 (+)
G37567 NA non-coding downstream 138950 11514762 ~ 11515088 (+)
G37588 NA non-coding downstream 283488 11659300 ~ 11676028 (+)
G37525 evc2 other upstream 9019 11352078 ~ 11352387 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other upstream 348497 10997230 ~ 11012909 (+)
glrx glrx other upstream 965219 10387908 ~ 10396187 (+)
G37197 NA other upstream 1051410 10305187 ~ 10309996 (+)
prickle2b prickle2 other upstream 1504750 9760233 ~ 9856656 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other downstream 9372 11385184 ~ 11394398 (+)
G37597 NA other downstream 404366 11780178 ~ 11805394 (+)
G37714 NA other downstream 877254 12253066 ~ 12254974 (+)
LOC120557851 krt18,LOC105931717,LOC101469154 other downstream 898948 12274760 ~ 12278624 (+)
G37730 NA other downstream 1010359 12386171 ~ 12387175 (+)

Expression


Co-expression Network