gata1a (LOC100696076,LOC102798593,LOC101485806,LOC102310803)


Basic Information

Item Value
gene id gata1a
gene name LOC100696076,LOC102798593,LOC101485806,LOC102310803
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7312734 ~ 7317082 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797600.1
GCCCTAAACTTCGCTGGGGGTTGGAGAAGTTGTTCTTGAAGCCATCAGCCTAAAGTGAGGTAGACAGGCGAGCTGTGCCACCTTCCACCTGTCTACGTACATTTAACCCCTGAGTCCCGCTGCTCACCTCGCTCATCTGTGACAACCACTCAGTGCTATAGGTTGAGGTTTCATCTGTCAGAATGGAGGATTCGTCAGAGCAGTCCCACTGGGTGTCTCCAGCTCTGCTCAGCTCAGATCCTCTGGCTGGTTTCTCCACTGAGCCCGGCCTTCTTCCTccaggagaagaaggagaggcCTTTTTCTCAAGCCAGGACACAGACTACACCAGCCTGCCCCCTTTCTTCTCCAACCCAAGCTACAGCCGAGCGCCACCCACCTACAGACACAGCTCGGTTCGACAGGTGTTCACCTCACCGAGCCTCCTCAGCAACCTCCAGCTGCTAGACGGGCCAGGCAGCCACTCCCTGAGCTCACCCTACAACCCCCCGGCCTCCACCTGGAGCAGCAGCCCCCTCAACAAGACCCCGCTGCACTCACACACCCCGACCTCCCTCTACACCCCCTGCGTCACTTCCTCCTTCACCACCTCCAGAGACGGATACTTTTCTCCGAGCAGAGAGGGCAGGGAGAGCCCCCGGCTTCAGGAGGCCCTGAAGGCCGAGCGCCTGAGCCCGTTGGGGGGGTCGGGGGCCAGCAGCAGTTTTCTGAATCTGACTCCTGCTGCTGGGAGTGTGTACACTCCGTCATCCCACTCCCACCCACACATGCTGAGCCCCTACAGCTCGTACATGACAGGTCCACAAGAGTACAACTCTGGTGCCCTGTACTCCAGCCCTGGAGCATGGATCAGCCCCTCATACTCCCCTAAACTTCGCAATAAGATGAGAATATCCACTCCAGAGGCCAGAGAGTGTGTTAACTGCGGAGCCACAGCTACCCCTCTGTGGCGTCGGGATGGTACAGGCCACTACCTGTGTAACGCCTGTGGACTGTACCACAAGATGAACGGCCAAAACAGACCACTAATCCGACCCAAGAAGAGACTGattGTCAGCAAGCGGGCAGGTACGCTGTGTGCCAACTGTCACACAAGCACAACAACACTGTGGAGACGCAACGCCAACGGAGAGCCTGTGTGTAATGCGTGTGGTCTCTACTTTAAACTGCACAATGTCAACCGGCCCCTCGCCATGAAGAAGGAAGGCATTCAAACGCGCAACAGAAAAGTGTCCAACAAGAACAAGAAGAGCAAGAAGGCCGCCATGTTTGAGTCGTACTCGGATGTGACTCAGCATCCATCCGGGGACGACAATTGCGGGTCATTTTCCCTCGGCCCCGGGACTCTCCTCACCTACAGCAACACACCGCACCTGCATCCCTCCGCCTCCTTACAATACACACACCACCTCAACAATGGCATGATGCCCACACTGGTGtgaaataacaataaaaggACACCTGAAAGCTGGGTATATTCAGGAATCAGTACGCTTGCTTGCCAGTTATTTGTGTGAATTTGTACATATGTGTTTCTACGCTGGACGACTGGAGTTTTCTGTTCATTGTCACTGTATTTTAGAAGATATTATCTCGATCAAGTATGATTGCAGTCAGATAAAATCACTCTATTGAGGTTGCTGCACATGTAAACACAATGATAAGGGACTTTTTTTTCAGCtgtaaatacaaacacaaattgGATTTGACTGCCCAAGTCATAATCCCTTGTCTATTATTAGTAATGTGAAATCATACTTGGGTTTTGTGTTACACAAGTCTCTTTTGTATTTGCAAAATTGATatattgaaataataaaatgtgtgaCTTATTCTG

Function

NR:

description
PREDICTED: GATA-binding factor 2 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797600.1 True 1837 mRNA 0.52 6 7312734 7317082

Neighbor

gene id symbol gene type direction distance location
LOC120557474 traip coding upstream 221982 7082265 ~ 7090752 (+)
sema3fb LOC103371090,LOC104933620 coding upstream 371122 6882145 ~ 6941612 (+)
arl8bb arl8b,arl8a,LOC107095653,LOC105934196,LOC106565753,LOC103355426 coding upstream 526467 6775726 ~ 6786267 (+)
LOC120556653 naaa coding upstream 542459 6767012 ~ 6770275 (+)
bhlhe40 bhlhe40,LOC104959416 coding upstream 552252 6756944 ~ 6760482 (+)
mafbb mafb,LOC104945735 coding downstream 18384 7335466 ~ 7337312 (+)
si:ch211-232b12.5 LOC104939380,LOC103365892,LOC100697406,LOC102796719 coding downstream 44858 7361940 ~ 7377650 (+)
snai1a LOC104939346,LOC103358824,LOC108244374,LOC107385873 coding downstream 95707 7412789 ~ 7416280 (+)
myh7ba LOC103358826,LOC104966023,LOC101480568,LOC102289245 coding downstream 117128 7434210 ~ 7449018 (+)
zmynd8 LOC103358838 coding downstream 392884 7709966 ~ 7727318 (+)
G36470 NA non-coding upstream 38855 7273081 ~ 7273879 (+)
G36469 NA non-coding upstream 39934 7272454 ~ 7272800 (+)
LOC120557300 NA non-coding upstream 54657 7242362 ~ 7258077 (+)
LOC120557301 NA non-coding upstream 80264 7225630 ~ 7232470 (+)
G36450 tfe3,LOC103365907,LOC104939489 non-coding upstream 120244 7192016 ~ 7192490 (+)
LOC120557355 NA non-coding downstream 12213 7329295 ~ 7330628 (+)
G36485 NA non-coding downstream 40669 7357751 ~ 7359732 (+)
G36529 NA non-coding downstream 61613 7378695 ~ 7454262 (+)
G36563 ndrg3 non-coding downstream 159052 7476134 ~ 7479379 (+)
G36568 ndrg3,LOC105922538 non-coding downstream 170814 7487896 ~ 7518266 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 6391 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 40366 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 125520 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 674211 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 1006591 6139463 ~ 6306143 (+)
G36744 NA other downstream 910680 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 2443151 9760233 ~ 9856656 (+)
G37197 NA other downstream 2988105 10305187 ~ 10309996 (+)
glrx glrx other downstream 3070826 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 3680148 10997230 ~ 11012909 (+)

Expression


Co-expression Network