mafbb (mafb,LOC104945735)


Basic Information

Item Value
gene id mafbb
gene name mafb,LOC104945735
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7335466 ~ 7337312 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797604.1
GTGCGCTTCCCCTTAGCAAGCAGAGGTGCGTCCAGTGCAGTCCGCTGGCATCTGTGGACTTCTAGTGTGTGGCTACCGAAGCCGAGCAGGCTGCCCGGTGCAAAATCACCAGTTTGCACAGAGTTTGTTAAGGTGGGGGGCTTTTGAGCACGCACGTTTGTTTTTTCCCTTCTGAGCTGAAATCAAAGTTTGGAATTACTGCATTTTTTCGAAAGTAAGCGCGCTTTCGCTGACTGTATGAAATAGCGTTGGACACTTGGAGCTCTTTGAAGGGACTCGCTTGCCATTTACTATGACCGCTGAGGCGCATTCGCATTTGGGACTGCAGAAAAACCCCATGGATTTCGTCAGCGACTTCGATTTGATGAAGTTCGGCGTTAAGAAGGAGACGATGCAGGGGATAGACCGCTCCTTCATCGGGCAATGCAGCCAGCTCCAGAGACCGGACTCTGTTTCCTCCACCCCTGGCAGCACGCCTTGTAACTCCGTACCCTCATCACCAAACCTCAATCCAAACGAGCAGAGAAATAACCCCGGGGGCGACCAGTTCTGGATACCCAACAATGGGGGTTACCCCCAGCAAATGTACCCTCAAGCTTTTGGTCTGACACCCGAGGACGCAATGGAGGCCCTAATCGGCGCCACGGCGCAGCAGGGACACCCATCTGTGCCCCACGGCCACCATCCGCCACCTTTCCAAGCTGAATACGAAGGGTACGGCCACCTCAACGAGCCTGTCCAGCACTACCCGGGACTCCCGGCTCACCCCGACATGCAAGGCATCCCCAGCAGCCACTGCCAAGACCCTTATCTCAAAGATGACATGGGTTGCGCGTCCCCTCAGTCGCCGGAGGACCAGGTCCTCGGTGCGCACCACCAGCACAGCCGCCACGACAGGCGATCCAACGCCGACAACCACTTCTCAGACGACCAGCTGGTGTCCATGTCCGTCAGGGAGCTCAATCGACTCCTCAGAGGCCTCGGCAAGGACGAAGTGATGCGTCTGAAGCAGAAGCGCCGGACCCTGAAAAACCGAGGTTACGCACAGTCCTGCCGTTACAAGCGCGTCCAGCAGAAACACGTCTTGGAGCACGAAAAGACAAACCTGGTGACACAGGTTGAGCAGCTGAAACATGAACTAAACAGACTGATGCGGGAGAGGGATGCATACAAACTTAAATGTGAGAAACTGTCCGGTGCAAACTGTTACCACGAAACTGGGTCTACCAGTGACAACCCTTCCTCCCCCGAGTATTTAATGTGAGTTTGTTAATATCCTGCAGAACAGATTCTTTAGGCACTAGGTTGACAGCTCGCCTTGCTCTTTTACAAACAGGCCCATGGATTCATCAAGTTGTAATTAATTTTGGACATAAGGATATCacttaaataattgtaatagaTACAACTAGGCAACATGTTATTAATGGAAAATGACAATGAAGCATGCATGCAGGACATGTATGAGATGTTTTTATTCTATACAGGCGTATCTGTATTTTGTCTGAAAGGAGATACTTGAAATCAGAGAATATTCCCTTTTTATTAAACGTTAGTCCTTTTGCTTCAGTTACTCCTCAATCTTCATTTTGGTGATTTTGCTTTGCTTAGTTTTTGTAGCTCAAATTATATTTTGTGTTCATGCTTCcttaaaaatagaaaacatactGAAAAGAATTATGCTAGAAATTACATTTCTATAATTTTTATGAAGCTGATTCTGCTGGACAGATGTGTTCCTTATTTGCTTGTTCTTTTTAAGATAATATATGATTATGCAAATTGTTTTTCATCCACTATGTCTTTAATTTGCTATGGATCAATAAACCTATTGTAACTTTTTAAAA

Function

symbol description
mafb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in blood; brain; kidney; and spleen. Human ortholog(s) of this gene implicated in Ayme-Gripp syndrome; cataract; and cataract 21 multiple types. Orthologous to human MAF (MAF bZIP transcription factor).

NR:

description
PREDICTED: transcription factor MafB-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09036 MAFB; transcription factor MAFB

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797604.1 True 1847 mRNA 0.48 1 7335466 7337312

Neighbor

gene id symbol gene type direction distance location
gata1a LOC100696076,LOC102798593,LOC101485806,LOC102310803 coding upstream 18384 7312734 ~ 7317082 (+)
LOC120557474 traip coding upstream 244714 7082265 ~ 7090752 (+)
sema3fb LOC103371090,LOC104933620 coding upstream 393854 6882145 ~ 6941612 (+)
arl8bb arl8b,arl8a,LOC107095653,LOC105934196,LOC106565753,LOC103355426 coding upstream 549199 6775726 ~ 6786267 (+)
LOC120556653 naaa coding upstream 565191 6767012 ~ 6770275 (+)
si:ch211-232b12.5 LOC104939380,LOC103365892,LOC100697406,LOC102796719 coding downstream 24628 7361940 ~ 7377650 (+)
snai1a LOC104939346,LOC103358824,LOC108244374,LOC107385873 coding downstream 75477 7412789 ~ 7416280 (+)
myh7ba LOC103358826,LOC104966023,LOC101480568,LOC102289245 coding downstream 96898 7434210 ~ 7449018 (+)
zmynd8 LOC103358838 coding downstream 372654 7709966 ~ 7727318 (+)
LOC120557338 NA coding downstream 390837 7728149 ~ 7751120 (+)
LOC120557355 NA non-coding upstream 4838 7329295 ~ 7330628 (+)
G36470 NA non-coding upstream 61587 7273081 ~ 7273879 (+)
G36469 NA non-coding upstream 62666 7272454 ~ 7272800 (+)
LOC120557300 NA non-coding upstream 77389 7242362 ~ 7258077 (+)
LOC120557301 NA non-coding upstream 102996 7225630 ~ 7232470 (+)
G36485 NA non-coding downstream 20439 7357751 ~ 7359732 (+)
G36529 NA non-coding downstream 41383 7378695 ~ 7454262 (+)
G36563 ndrg3 non-coding downstream 138822 7476134 ~ 7479379 (+)
G36568 ndrg3,LOC105922538 non-coding downstream 150584 7487896 ~ 7518266 (+)
G36604 NA non-coding downstream 183868 7521180 ~ 7525963 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 29123 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 63098 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 148252 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 696943 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 1029323 6139463 ~ 6306143 (+)
G36744 NA other downstream 890450 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 2422921 9760233 ~ 9856656 (+)
G37197 NA other downstream 2967875 10305187 ~ 10309996 (+)
glrx glrx other downstream 3050596 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 3659918 10997230 ~ 11012909 (+)

Expression


Co-expression Network