tspo (tspo)


Basic Information

Item Value
gene id tspo
gene name tspo
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 18515298 ~ 18517711 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797660.1
GTTATACAACATAATTATTTAGCtagttaaataaaaacacaactacCAAATTACTCCACCAACTCTCTTGAGTTAGTCCTCCGACCAATCATCTTCGACGTCAATGTTTAGCGTGTCTGTGTATGCACGGGGAGTGTCTGTACCACACTGATAAGACAGCCCTGCCCGTTCAACAAACTTATATCACAATATAGCAGCATGCCTTAAGGTTTTCACTGTAACGGTAGGTGTGTAGCATTAATTATTAGCTAGTCCGACAAAACATACTGTAACGTTACATACTGTACGGACAACAACTGAGTGAGGGAACATGTGGCTGCCTATGCTTGGGATGACTGCCCTGCCGCACCTGGGAGGGCTCGTTGGCGGTTACATCACACGCCAACAGGTAAAGACCTGGTACCCGACCCTGAAGAAACCATCATGGCGCCCACCAAATGCAGCATTCCCTGTCGTGTGGACCTGTCTGTATACAGGCATGGGGTATGGCTCCTACCTGGTCTGGAAAGAGCTGGGAGGTTTCACTGAGGATGCACTGGTTCCACTGGGACTTTATGGGCTGCAGCTAGCACTGAACTGGACCTGGACTCCTATCTTCTTTGGCGCACACAAGCTGAAATTGGCACTCATGGAAATTGTTCTTCTCACGGGTACCGTCGCAGCCACCATGGTGTCTTGGTATCCCATCAACCGCACTGCCACACTGCTGATGGCACCCTACCTGTCCTGGCTGTGCCTCGCCACCTCTCTCAACTACTGCATATGGAGGGACAAcagtgaggagaaagaagagtAGGGAGACAGTTCTGTGTGCTTTGTGATTTTTCTTGTCATTAAATTGCTGCACTGTTTCACTGTTTAGCTTTTAGTTTTAGACCATAACGTTGGCTAAtgtgaatgtaaaaataaaaaaagatgataCAAAGAAGTCATGAGGTCATTGAGAGATAGTTTTAATCATAGTTTTTCTTGCTTGCCATCTGCAGCAATGGGGCAGCAGCATAATACACACCTTAGCCTTACTCTGTCTGATGAGGATCAAACAACCTGCCTCTGATCCatctttgttgttttgttaccCAAACTGAATGGATCCCTGCTAAAAATTCAAAGCTCTTAATGCAATATTGATCAGGCTACTTCTTTAAAGTGAACGAGAATCACCTTGTTATATTGTGACGGCTTTTGAACGCAACTATGACTATAATATGGACTAATAAAATAATCTTTTGGGGTTTGTCAAGTGTAAA
>XM_039797661.1
TGGCGTTATACAACATAATTATTTAGCtagttaaataaaaacacaactacCAAATTACTCCACCAACTCTCTTGAGTTAGTCCTCCGACCAATCATCTTCGACGTCAATGTTTAGCGTGTCTGTGTATGCACGGGGAGTGTCTGTACCACACTGATAAGACAGCCCTGCCCGTTCAACAAACTTATATCACAATATAGCAGCATGCCTTAAGGTTTTCACTGTAACGAACATGTGGCTGCCTATGCTTGGGATGACTGCCCTGCCGCACCTGGGAGGGCTCGTTGGCGGTTACATCACACGCCAACAGGTAAAGACCTGGTACCCGACCCTGAAGAAACCATCATGGCGCCCACCAAATGCAGCATTCCCTGTCGTGTGGACCTGTCTGTATACAGGCATGGGGTATGGCTCCTACCTGGTCTGGAAAGAGCTGGGAGGTTTCACTGAGGATGCACTGGTTCCACTGGGACTTTATGGGCTGCAGCTAGCACTGAACTGGACCTGGACTCCTATCTTCTTTGGCGCACACAAGCTGAAATTGGCACTCATGGAAATTGTTCTTCTCACGGGTACCGTCGCAGCCACCATGGTGTCTTGGTATCCCATCAACCGCACTGCCACACTGCTGATGGCACCCTACCTGTCCTGGCTGTGCCTCGCCACCTCTCTCAACTACTGCATATGGAGGGACAAcagtgaggagaaagaagagtAGGGAGACAGTTCTGTGTGCTTTGTGATTTTTCTTGTCATTAAATTGCTGCACTGTTTCACTGTTTAGCTTTTAGTTTTAGACCATAACGTTGGCTAAtgtgaatgtaaaaataaaaaaagatgataCAAAGAAGTCATGAGGTCATTGAGAGATAGTTTTAATCATAGTTTTTCTTGCTTGCCATCTGCAGCAATGGGGCAGCAGCATAATACACACCTTAGCCTTACTCTGTCTGATGAGGATCAAACAACCTGCCTCTGATCCatctttgttgttttgttaccCAAACTGAATGGATCCCTGCTAAAAATTCAAAGCTCTTAATGCAATATTGATCAGGCTACTTCTTTAAAGTGAACGAGAATCACCTTGTTATATTGTGACGGCTTTTGAACGCAACTATGACTATAATATGGACTAATAAAATAATCTTTTGGGGTTTGTCAAGTGTAAA

Function

symbol description
tspo Acts upstream of or within primitive erythrocyte differentiation. Predicted to be located in membrane. Predicted to be active in mitochondrial outer membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axial blood vessel; blastomere; hematopoietic system; nervous system; and pleuroperitoneal region. Orthologous to several human genes including TSPO (translocator protein).

NR:

description
translocator protein

GO: NA

KEGG:

id description
K05770 TSPO, BZRP; translocator protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797660.1 True 1250 mRNA 0.44 4 18515302 18517711
XM_039797661.1 False 1170 mRNA 0.45 4 18515298 18517711

Neighbor

gene id symbol gene type direction distance location
ppil1 ppil1,LOC102783931 coding upstream 86700 18424507 ~ 18428598 (+)
si:ch211-157b11.14 NA coding upstream 123642 18384593 ~ 18391656 (+)
c4h1orf159 LOC104931340,LOC103359840,LOC101474389,LOC108231181,LOC102786121,LOC107100091,LOC102306124 coding upstream 132203 18376550 ~ 18383095 (+)
kbtbd12 kbtbd12,LOC103464606 coding upstream 143396 18367978 ~ 18371902 (+)
p4htm LOC103359812,LOC100700943 coding upstream 160457 18345749 ~ 18354841 (+)
tomm6 NA coding downstream 4048 18521759 ~ 18523086 (+)
c4h1orf74 LOC104948860 coding downstream 5444 18523155 ~ 18524040 (+)
eif4enif1 eif4enif1 coding downstream 32265 18549976 ~ 18564635 (+)
patz1 patz1 coding downstream 48190 18565901 ~ 18579863 (+)
tgfa tgfa,LOC102305789,LOC107385163 coding downstream 75453 18593164 ~ 18598375 (+)
G39861 NA non-coding upstream 62798 18448847 ~ 18452500 (+)
G39665 NA non-coding upstream 661932 17852516 ~ 17853366 (+)
G39654 NA non-coding upstream 729488 17785259 ~ 17785810 (+)
G39638 NA non-coding upstream 779392 17735486 ~ 17735906 (+)
G39633 NA non-coding upstream 792950 17715412 ~ 17722348 (+)
LOC120557393 NA non-coding downstream 26444 18544155 ~ 18547192 (+)
G39925 NA non-coding downstream 52880 18570591 ~ 18570983 (+)
G39926 NA non-coding downstream 55971 18573682 ~ 18573909 (+)
G39927 NA non-coding downstream 56271 18573982 ~ 18574211 (+)
G39934 NA non-coding downstream 81313 18599024 ~ 18599229 (+)
LOC120557740 acy1 other upstream 288720 18215706 ~ 18226578 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other upstream 320387 18189582 ~ 18194911 (+)
wnk2 wnk2,LOC104946158 other upstream 585180 17904698 ~ 17930118 (+)
LOC120556838 NA other upstream 781287 17720441 ~ 17734011 (+)
G39581 LOC104949003,LOC103357913 other upstream 906082 17607930 ~ 17609216 (+)
oxtrl LOC104920519,LOC103360274,LOC100702815,LOC102207462,LOC102295060 other downstream 778548 19296259 ~ 19314826 (+)
G40164 LOC103360294,LOC104965627,LOC100702547 other downstream 807118 19324829 ~ 19326625 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 907155 19424866 ~ 19426456 (+)
slc38a3b LOC103360384 other downstream 924297 19442008 ~ 19470998 (+)
LOC120557344 LOC104966310 other downstream 1099470 19617181 ~ 19632519 (+)

Expression


Co-expression Network