gnat1 (gnat1,LOC101158659,LOC103133111,LOC107385205,LOC101468562,LOC102214189,LOC100706288,LOC106516079,LOC102793896)


Basic Information

Item Value
gene id gnat1
gene name gnat1,LOC101158659,LOC103133111,LOC107385205,LOC101468562,LOC102214189,LOC100706288,LOC106516079,LOC102793896
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 19742912 ~ 19746843 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797691.1
CCCTCCTCTGTCAGATGGGCAGAGGATGCGAAATCCTCTGCTAAGACAGGAACGTTCTCAAACATTCTCCAGTTGTTTCCGCAGGCAGGTGATGCATCAGCTCCATAATTAACGGCACCGGTTAGAAAGTAGGCGATCAGCTAGGACCATCTCGGATTTTTTCCTGAAACTTGGCTTTTGAGCAGAGGGGCACAAACCGGGAAAAGTAGAATGGGGGCTGGAGCGAGCGCCGAGGAGAAACACTCCAGAGGGCTGGAGAAGAAGCTGAAGGAGGATGCCGACAGGGATGCAAGAACTGttaagctgctgctgctagGTGCTGGAGAATCTGGCAAAAGCACTATCGTCAAACAGATGAAAATTATCCACCAAGATGGCTACTCACTTGAAGAATCCATGGAGTTCATTGTCATCATCTACAGCAACACCCTGCAGTCCATCATGGCCATTGTGAAGGCCATGAGCACATTAAATATGAACTATGGCCACCCTGATCAGCAGGATGATGCCAGGAAACTCATGCATCTTGCAGACACCATTGAGGAAGGAACCATGCCTAAAGAGATGGCAGACATAATTTTGCGCCTATGGAAGGACTCTGGCATTCAGGCGTGCTTTGAAAGGGCCTCAGAGTACCAACTCAATGACTCAGCTGGATACTACCTGAGTGACTTGGAGCGTCTGATCCAACCAGGCTACGTGCCCACTGAGCAGGATGTGCTGCGATCAAGAGTGAAGACCACTGGTATCATCGAGACCACATTTGGCTTGAAAGATCTCAATTTCAGGTTAGTCAGTGCAGTATTTCTAAAGAGGATGGCACCAATAAGTGCTCCCACTTTGCTGGATTGCAATCATAAAGATAACATTCTTCTGTTTCCATGCAGAATGTTTGATGTGGGTGGCCAGAGGTCAGAGAGGAAGAAGTGGATTCATTGTTTTGAAGGTGTGACCTGTATCATCTTCATTGCTGCTTTGAGCGCCTACGACATGGTGCTGGTGGAGGATGATGAAGTGAATCGAATGCACGAGAGTCTGCACTTGTTCAACAGTATCTGCAACCACCGCTACTTCGCCACCACCTCCATTGTACTCTTCCTCAACAAGAAAGATGTGTTCACTGAGAAGATCAAGAAAGCTCATCTCAGCATGTGCTTCCCTGAATACGATGGCCCCAATACATATGAGGATGCTGGTAACTACATCAAATTACAGTTCTTAGACCTGAACCTGCGCCGAGACATCAAAGAAATCTACTCTCACATGACCTGTGCCACAGACACAGAGAATGTCAAGTTTGTGTTTGACGCTGTAACCGACATCATAATCAAAGAAAACCTGAAAGACTGTGGTCTCTTCTAAAAGTCATGCTGAGAAACCCAATGAAGggtGATGTTGTAGCCCTGTCACATTCCACAAATCCTCTCAATTCAAACTGAGGACTGAAGACGAAAACTAAACCCCTCCCCATCCTCAAAACTGGCGAACGCAAAAAATTCAAATCAATTTGTTGTGTTCCAATGAAGTTGTAGCTTTAACAAGACTTTTGATCAAGTCCAGAAGACAGTTCTTCAGTCAGAAAATCCTGTGCAGATTTCAGATGAGTTGAATTTTAGTCTAGCTACCTTTTCTCTTGAGTCTTTTGAAATCATCTATTGGAGAGCTATGCTATCTGTAGTTAAGACATCAAAAGCTTCTGTCAGCATTACGTGTTTTCTTCTCACATCCACTAATGTGAATAGATGTCAGGCTAATGCATCTTTTCTCCAGTAACTGGTCAGTAGCCTATACAGCCAGAAAGCAAACAAGAGGGCCTCACCACCTGCAGACACAATTCAACAGGAACTTGTCACTAGAAATGGCTTTTATGTACAGGTCTACAGCTCACTTTGAGACCAAATTTAAACAGATGAGATACTTATTTTTTAAGTGTTAGAACATGTAACTTTTTGAAATAGTTATAGTTAGAAGGACCAGTTTAATTAAGTCTACAATTAAACATTTTTCTATTCGACAGTTCATGAAGGGTGGCGATACCATATGGATCTGTAACAGTTAACTGGTAGATGTAATATACTTCAATTTAAAAAGTACTTGTCTAAAGGTTAACAATCTACAGGCCTGTGAGCCAACTATCACTGTACAGAAACCAATAATTGCAAACCTTGACTAAACCTATTAAAGCTTATAGAAAACAGAGTACTTTCCCACTTTCACAAATAAAAACTAACACAGCAA
>XM_039797692.1
CTCTGTCAGATGGGCAGAGGATGCGAAATCCTCTGCTAAGACAGGAACGTTCTCAAACATTCTCCAGTTGTTTCCGCAGGCAGGTGATGCATCAGCTCCATAATTAACGGCACCGGTTAGAAAGTAGGCGATCAGCTAGGACCATCTCGGATTTTTTCCTGAAACTTGGCTTTTGAGCAGAGGGGCACAAACCGGGAAAAGTAGAATGGGGGCTGGAGCGAGCGCCGAGGAGAAACACTCCAGAGGGCTGGAGAAGAAGCTGAAGGAGGATGCCGACAGGGATGCAAGAACTGttaagctgctgctgctagGTGCTGGAGAATCTGGCAAAAGCACTATCGTCAAACAGATGAAAATTATCCACCAAGATGGCTACTCACTTGAAGAATCCATGGAGTTCATTGTCATCATCTACAGCAACACCCTGCAGTCCATCATGGCCATTGTGAAGGCCATGAGCACATTAAATATGAACTATGGCCACCCTGATCAGCAGGATGATGCCAGGAAACTCATGCATCTTGCAGACACCATTGAGGAAGGAACCATGCCTAAAGAGATGGCAGACATAATTTTGCGCCTATGGAAGGACTCTGGCATTCAGGCGTGCTTTGAAAGGGCCTCAGAGTACCAACTCAATGACTCAGCTGGATACTACCTGAGTGACTTGGAGCGTCTGATCCAACCAGGCTACGTGCCCACTGAGCAGGATGTGCTGCGATCAAGAGTGAAGACCACTGGTATCATCGAGACCACATTTGGCTTGAAAGATCTCAATTTCAGAATGTTTGATGTGGGTGGCCAGAGGTCAGAGAGGAAGAAGTGGATTCATTGTTTTGAAGGTGTGACCTGTATCATCTTCATTGCTGCTTTGAGCGCCTACGACATGGTGCTGGTGGAGGATGATGAAGTGAATCGAATGCACGAGAGTCTGCACTTGTTCAACAGTATCTGCAACCACCGCTACTTCGCCACCACCTCCATTGTACTCTTCCTCAACAAGAAAGATGTGTTCACTGAGAAGATCAAGAAAGCTCATCTCAGCATGTGCTTCCCTGAATACGATGGCCCCAATACATATGAGGATGCTGGTAACTACATCAAATTACAGTTCTTAGACCTGAACCTGCGCCGAGACATCAAAGAAATCTACTCTCACATGACCTGTGCCACAGACACAGAGAATGTCAAGTTTGTGTTTGACGCTGTAACCGACATCATAATCAAAGAAAACCTGAAAGACTGTGGTCTCTTCTAAAAGTCATGCTGAGAAACCCAATGAAGggtGATGTTGTAGCCCTGTCACATTCCACAAATCCTCTCAATTCAAACTGAGGACTGAAGACGAAAACTAAACCCCTCCCCATCCTCAAAACTGGCGAACGCAAAAAATTCAAATCAATTTGTTGTGTTCCAATGAAGTTGTAGCTTTAACAAGACTTTTGATCAAGTCCAGAAGACAGTTCTTCAGTCAGAAAATCCTGTGCAGATTTCAGATGAGTTGAATTTTAGTCTAGCTACCTTTTCTCTTGAGTCTTTTGAAATCATCTATTGGAGAGCTATGCTATCTGTAGTTAAGACATCAAAAGCTTCTGTCAGCATTACGTGTTTTCTTCTCACATCCACTAATGTGAATAGATGTCAGGCTAATGCATCTTTTCTCCAGTAACTGGTCAGTAGCCTATACAGCCAGAAAGCAAACAAGAGGGCCTCACCACCTGCAGACACAATTCAACAGGAACTTGTCACTAGAAATGGCTTTTATGTACAGGTCTACAGCTCACTTTGAGACCAAATTTAAACAGATGAGATACTTATTTTTTAAGTGTTAGAACATGTAACTTTTTGAAATAGTTATAGTTAGAAGGACCAGTTTAATTAAGTCTACAATTAAACATTTTTCTATTCGACAGTTCATGAAGGGTGGCGATACCATATGGATCTGTAACAGTTAACTGGTAGATGTAATATACTTCAATTTAAAAAGTACTTGTCTAAAGGTTAACAATCTACAGGCCTGTGAGCCAACTATCACTGTACAGAAACCAATAATTGCAAACCTTGACTAAACCTATTAAAGCTTATAGAAAACAGAGTACTTTCCCACTTTCACAAATAAAAACTAACACAGCAA

Function

symbol description
gnat1 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in G protein-coupled adenosine receptor signaling pathway; adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway; and response to light stimulus. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be part of heterotrimeric G-protein complex. Is expressed in pineal complex and visual system. Human ortholog(s) of this gene implicated in congenital stationary night blindness 1G; congenital stationary night blindness autosomal dominant 3; and night blindness. Orthologous to human GNAT1 (G protein subunit alpha transducin 1).

NR:

description
PREDICTED: guanine nucleotide-binding protein G(t) subunit alpha-like

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function

KEGG:

id description
K04631 GNAT1_2; guanine nucleotide-binding protein G(t) subunit alpha 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797691.1 True 2238 mRNA 0.43 8 19742912 19746843
XM_039797692.1 False 2134 mRNA 0.43 9 19742917 19746843

Neighbor

gene id symbol gene type direction distance location
LOC120557345 LOC103360435,LOC104965612 coding upstream 126475 19601978 ~ 19616437 (+)
LOC120557413 mst1r coding upstream 154296 19574142 ~ 19588616 (+)
inka1b LOC103360405,LOC104965615 coding upstream 207997 19532337 ~ 19534915 (+)
gnai2b LOC108231398,LOC103360398,LOC100707363 coding upstream 214165 19473388 ~ 19528747 (+)
rbm5 NA coding upstream 305887 19427273 ~ 19437025 (+)
ddi2 ddi2,LOC103362592 coding downstream 48511 19795354 ~ 19804157 (+)
si:ch73-15b2.5 NA coding downstream 58514 19805357 ~ 19809864 (+)
h6pd h6pd coding downstream 92321 19839164 ~ 19847354 (+)
rbp7b rbp7,LOC104956357,LOC103362661 coding downstream 102983 19849826 ~ 19851529 (+)
si:ch211-161c3.5 calml6,c5h3orf18,clg5h3orf18,LOC104956351 coding downstream 130579 19877422 ~ 19888732 (+)
G40182 NA non-coding upstream 368073 19374630 ~ 19374839 (+)
G40139 NA non-coding upstream 494566 19245773 ~ 19248346 (+)
G40109 NA non-coding upstream 563975 19173149 ~ 19178937 (+)
G40104 LOC102787023,LOC103360233,LOC102206431,LOC101476705 non-coding upstream 573521 19168836 ~ 19169391 (+)
G40073 NA non-coding upstream 665875 19075740 ~ 19077037 (+)
G40284 NA non-coding downstream 14330 19761173 ~ 19762498 (+)
G40339 NA non-coding downstream 321435 20068278 ~ 20121870 (+)
G40352 NA non-coding downstream 399892 20146735 ~ 20146983 (+)
G40357 NA non-coding downstream 410011 20156854 ~ 20157525 (+)
G40433 NA non-coding downstream 480494 20227337 ~ 20227816 (+)
sema3fa LOC103360486,LOC102793610,LOC100701195,LOC102213718,LOC102288772,LOC101468868 other upstream 1523 19687671 ~ 19741389 (+)
LOC120557344 LOC104966310 other upstream 110393 19617181 ~ 19632519 (+)
slc38a3b LOC103360384 other upstream 271914 19442008 ~ 19470998 (+)
brk1 brk1,BRK1,LOC106565571 other upstream 316456 19424866 ~ 19426456 (+)
G40164 LOC103360294,LOC104965627,LOC100702547 other upstream 416287 19324829 ~ 19326625 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other downstream 104705 19851548 ~ 19859341 (+)
abhd14b abhd14b other downstream 171046 19917889 ~ 19923549 (+)
G40353 rassf1,LOC102778369 other downstream 401261 20148104 ~ 20148690 (+)
vgll4b vgll4 other downstream 1548259 21295102 ~ 21343711 (+)
itga7 itga7 other downstream 2203533 21950376 ~ 21992611 (+)

Expression


Co-expression Network