r3hcc1 (LOC104945372)


Basic Information

Item Value
gene id r3hcc1
gene name LOC104945372
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11156708 ~ 11167806 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797722.1
TAAgtaactttgagcgtggcatggttgttggtgccagaagGGCTGGACCCGTCCCTCTGTCCACCCTGGCGTTTCCTTGTTTCGATGGCATTTATCTTCCAAAGCAAGAAAATAAATTCGTGCATCACGTCAAGAATGACCTGGAAATATACCAACAGAAAAGCAACCGCAGGAGCGTGCTCCTGTTCCCCCCTCTACCCAGCAGGCTGCGATACCTGATCCATAGGACCATAGAGGACCTGCCAGAGCTCACCACCTTCTCAGTAGGGGAGAGCTGGTGCCGCAGGGTGGTGGTCTGCCATTCTGAGCTCAGGGGTGAAGTAGAGGAAGACAGTGGCTGGGAGAGCAACAATGGCCTGTGTGAAGATCCCCTAAGAAGCGGGGAGGAGACAGATGGCAACACAAAGCCGAAGTCTTCGATCCCATCGCGAAGCAGAGGACCTAAGAGGCCGGACAAACCCCTTTACATGCCACGAGTTGCCCGGGAGAGACTGTCCTTACAAAACTCACACGGACCCTCAGTAAACCAAGAGTTGCCCAGTCCAGCCTCTAGTAGCTGTGACTGCCTCGGCAGTCAATCGGACTCTTGTTTCTGTCCCGAAACtacagaaaaaacaaagtcCACATGCACATCCAGGCAGGAATGTGTCCCCAGTGTAGCAGAGGGTGTCTTCAACCCTGTTGCTGACAGTTCAGCACTTTGTCCTCAGGAGGAGAAACAAAAGGTGGTGCATGAAGCTGAGCCCCTAGTCTGGGTACAGACCGTGTCCTGCTTCAGTGACATGACTCTGGAGGAGGATGAGAAGGGCAAGGAAGACATATGCACAGGCACCGATGATGTAACTGAAGAGATCAAGGCACATCTGAAAGAGACCGTAACTGTTTCCATTCAGCACGTTGAGAATGACTACTCCTCTTATGAGAATGTGTGCATCGGCCCGGAGACGTTTCCCCACGTGATCGAGATCTACGGCTTCCCACAGTGTTTCAAAACCGATGACCTCCTGGATGCTTTCACAGACTACAGTGATGGTGGAATGAAGATCGAGTGGGTAGATGACACACATGCCCTGGGGATTTTCTCCAGTGAGACGGCAGCACTCCATGCCATCTCCATCTGCCATCCAATGCTGAAGGCAAGAGCACTGGCTCAAGCGAGTAAAAAAGCCAAAGGCAAGGCCATCAGACGGGCAGAGTTTATCCAGCCAGTGAAGGAACGTCCTAGGACAGACTGTGCTGTTGCCAGGCGGATGGTGACCAGAGCCCTGGGGCTGCAGGGACGAGGCAGAGTGCAGCAGTACTGAAGGGAATTACCAACGCTGTTGGCTAACACAGAAAGGTCCAGCAGAGGTCTGTCTGCCTCCATTCATTGGCCCTCCGTAGAGGCTCCACAGTGGCCACAAACGGCTAGCAGATAATGAAGAGTGACTGCCGTCCAGCACGGTTTGCCTGCTTCACTGATCGGTGAATGCGTTTGCATGGTGAAGAAGGAGACTGCCACACATCTGCTAAATCCAGCCTGCTGAAGTGTCCCTGACGCTGGTGGCGAttcaccagactcaaagttgCCATTCTGTAGCTGAACCTGGCCCTTTTGGACATTATTGTTTTGGTTCCTGTTGTTCACTGTTAGGATCACTAATTGTAAAACAAAGCTAAATTCTGAAAGGGCCTAATGCAAATGGTGATTTCATATAGAAAATGCACTGGAGCAAACTGGAGAAGTTCCTAgcttgttttgatttgattgcATGTTGCCTTAAAACTAAAGTGCTTAAGTGTTTAATTTCCAGACAGGAATATTTTGTTTCCTCCTTTCCCAGGTGATGCAGGACTGGTTGCATAATTCTCTGTAAGTAGTAATTATTTTCCAACTTAATGCTGAAATACTCCACAGATTAATTTTTAGGATTTAGTTGGAAGAAATCTGTTACATTGTCCACTTTAGTTACAGCCAGATTTTTATATGGAGTGCACAACTCTAACTgacaaatgtaatgtaaatccATTAACAGAATCAGATGTGCTAAGAAGATAAAactaaatattgtttttaaaagccAGCTTTTCAATTGACAAACACATTTTGCAAAGGAAAACTCATGCAACTGCAATGTTATGCTGGACTCAATAGATattttctaatgtttttttagttgatttttcaaaacttttttttgcaaacaaGTTGCAAGATGTTTaagtttttaatatttattttgttcctctaaatgaaacaaaacaacCTTTTTAGGATTGTTGCCTGTTGTGTTCAAGTTCTTTGTCAGTCCTCATTACACAAAACTTTCAGAGGTTTTTGATCAAAAGTTTGAGCTTTGAAACTTGGAATGTTAGGTCCTTTGTACTTGTTACTGTACTGTCATTTCTATGTAATatacctttttcacggcagacatgttgacatgtcatagtaggaaaagcacaggtgtattcaaacccattaatgatgtctgcattccacttaggagaggccctggtattgtgcatgctgactcaat
>XM_039797723.1
TAAgtaactttgagcgtggcatggttgttggtgccagaagGGCTGGACCCGTCCCTCTGTCCACCCTGGCGTTTCCTTGTTTCGATGGCATTTATCTTCCAAAGCAAGAAAATAAATTCGTGCATCACGTCAAGAATGACCTGGAAATATACCAACAGAAAAGCAACCGCAGGAGCGTGCTCCTGTTCCCCCCTCTACCCAGCAGGCTGCGATACCTGATCCATAGGACCATAGAGGACCTGCCAGAGCTCACCACCTTCTCAGTAGGGGAGAGCTGGTGCCGCAGGGTGGTGGTCTGCCATTCTGAGCTCAGGGGTGAAGTAGAGGAAGACAGTGGCTGGGAGAGCAACAATGGCCTGTGTGAAGATCCCCTAAGAAGCGGGGAGGAGACAGATGGCAACACAAAGCCGAAGTCTTCGATCCCATCGCGAAGCAGAGGACCTAAGAGGCCGGACAAACCCCTTTACATGCCACGAGTTGCCCGGGAGAGACTGTCCTTACAAAACTCACACGGACCCTCAGTAAACCAAGAGTTGCCCAGTCCAGCCTCTAGTAGCTGTGACTGCCTCGGCAGTCAATCGGACTCTTGTTTCTGTCCCGAAACtacagaaaaaacaaagtcCACATGCACATCCAGGCAGGAATGTGTCCCCAGTGTAGCAGAGGGTGTCTTCAACCCTGTTGCTGACAGTTCAGCACTTTGTCCTCAGGAGGAGAAACAAAAGGTGGTGCATGAAGCTGAGCCCCTAGTCTGGGTACAGACCGTGTCCTGCTTCAGTGACATGACTCTGGAGGAGGATGAGAAGGGCAAGGAAGACATATGCACAGGCACCGATGATGTAACTGAAGAGATCAAGGCACATCTGAAAGAGACCGTAACTGTTTCCATTCAGCACGTTGAGAATGACTACTCCTCTTATGAGAATGTGTGCATCGGCCCGGAGACGTTTCCCCACGTGATCGAGATCTACGGCTTCCCACAGTGTTTCAAAACCGATGACCTCCTGGATGCTTTCACAGACTACAGTGATGGTGGAATGAAGATCGAGTGGGTAGATGACACACATGCCCTGGGGATTTTCTCCAGTGAGACGGCAGCACTCCATGCCATCTCCATCTGCCATCCAATGCTGAAGGCAAGAGCACTGGCTCAAGCGAGTAAAAAAGCCAAAGGCAAGGCCATCAGACGGGCAGAGTTTATCCAGCCAGTGAAGGAACGTCCTAGGACAGACTGTGCTGTTGCCAGGCGGATGGTGACCAGAGCCCTGGGGCTGCAGGGACGAGGCAGAGTGCAGCAGTACTGAAGGGAATTACCAACGCTGTTGGCTAACACAGGTCCAGCAGAGGTCTGTCTGCCTCCATTCATTGGCCCTCCGTAGAGGCTCCACAGTGGCCACAAACGGCTAGCAGATAATGAAGAGTGACTGCCGTCCAGCACGGTTTGCCTGCTTCACTGATCGGTGAATGCGTTTGCATGGTGAAGAAGGAGACTGCCACACATCTGCTAAATCCAGCCTGCTGAAGTGTCCCTGACGCTGGTGGCGAttcaccagactcaaagttgCCATTCTGTAGCTGAACCTGGCCCTTTTGGACATTATTGTTTTGGTTCCTGTTGTTCACTGTTAGGATCACTAATTGTAAAACAAAGCTAAATTCTGAAAGGGCCTAATGCAAATGGTGATTTCATATAGAAAATGCACTGGAGCAAACTGGAGAAGTTCCTAgcttgttttgatttgattgcATGTTGCCTTAAAACTAAAGTGCTTAAGTGTTTAATTTCCAGACAGGAATATTTTGTTTCCTCCTTTCCCAGGTGATGCAGGACTGGTTGCATAATTCTCTGTAAGTAGTAATTATTTTCCAACTTAATGCTGAAATACTCCACAGATTAATTTTTAGGATTTAGTTGGAAGAAATCTGTTACATTGTCCACTTTAGTTACAGCCAGATTTTTATATGGAGTGCACAACTCTAACTgacaaatgtaatgtaaatccATTAACAGAATCAGATGTGCTAAGAAGATAAAactaaatattgtttttaaaagccAGCTTTTCAATTGACAAACACATTTTGCAAAGGAAAACTCATGCAACTGCAATGTTATGCTGGACTCAATAGATattttctaatgtttttttagttgatttttcaaaacttttttttgcaaacaaGTTGCAAGATGTTTaagtttttaatatttattttgttcctctaaatgaaacaaaacaacCTTTTTAGGATTGTTGCCTGTTGTGTTCAAGTTCTTTGTCAGTCCTCATTACACAAAACTTTCAGAGGTTTTTGATCAAAAGTTTGAGCTTTGAAACTTGGAATGTTAGGTCCTTTGTACTTGTTACTGTACTGTCATTTCTATGTAATatacctttttcacggcagacatgttgacatgtcatagtaggaaaagcacaggtgtattcaaacccattaatgatgtctgcattccacttaggagaggccctggtattgtgcatgctgactcaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797722.1 True 2519 mRNA 0.46 9 11156708 11167806
XM_039797723.1 False 2515 mRNA 0.46 9 11156708 11167806

Neighbor

gene id symbol gene type direction distance location
LOC120556881 LOC106956972,LOC106927802,LOC104927944,LOC102076673,LOC103366911 coding upstream 294 11153550 ~ 11156414 (+)
rplp0 rplp0,LOC102776933 coding upstream 4422 11149713 ~ 11152286 (+)
LOC120556879 pxn,LOC107385500,LOC103366908 coding upstream 9266 11115242 ~ 11147442 (+)
myl2a LOC104927948,LOC103386220,LOC103366907,LOC100699907 coding upstream 53047 11100133 ~ 11103661 (+)
cita LOC100706533 coding upstream 58658 11054190 ~ 11098050 (+)
aggf1 aggf1 coding downstream 51583 11219389 ~ 11226582 (+)
LOC120558172 LOC104927939,LOC104961953,LOC100699369,LOC102798792,LOC103359250 coding downstream 68901 11236707 ~ 11243365 (+)
LOC120558115 NA coding downstream 95704 11263510 ~ 11266070 (+)
msx1a msx1 coding downstream 162750 11330556 ~ 11332646 (+)
LOC120557333 evc coding downstream 193600 11361406 ~ 11375812 (+)
G37383 fam219a non-coding upstream 213082 10936683 ~ 10943626 (+)
LOC120557560 NA non-coding upstream 227321 10928477 ~ 10929387 (+)
G37370 kiaa1161,LOC103376128 non-coding upstream 240909 10910297 ~ 10915799 (+)
G37367 NA non-coding upstream 359284 10796979 ~ 10797424 (+)
G37363 NA non-coding upstream 495384 10660866 ~ 10661324 (+)
G37521 NA non-coding downstream 176934 11344740 ~ 11345059 (+)
G37522 NA non-coding downstream 179280 11347086 ~ 11347671 (+)
G37523 NA non-coding downstream 181330 11349136 ~ 11349368 (+)
G37524 evc2 non-coding downstream 181744 11349550 ~ 11349773 (+)
G37526 NA non-coding downstream 186470 11354276 ~ 11354743 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other upstream 143799 10997230 ~ 11012909 (+)
glrx glrx other upstream 760521 10387908 ~ 10396187 (+)
G37197 NA other upstream 846712 10305187 ~ 10309996 (+)
prickle2b prickle2 other upstream 1300052 9760233 ~ 9856656 (+)
G36744 NA other upstream 2927988 8227762 ~ 8228720 (+)
G37525 evc2 other downstream 184272 11352078 ~ 11352387 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other downstream 217378 11385184 ~ 11394398 (+)
G37597 NA other downstream 612372 11780178 ~ 11805394 (+)
G37714 NA other downstream 1085260 12253066 ~ 12254974 (+)
LOC120557851 krt18,LOC105931717,LOC101469154 other downstream 1106954 12274760 ~ 12278624 (+)

Expression


Co-expression Network