col2a1b (col2a1,LOC103356561,LOC107668081,LOC107585898)


Basic Information

Item Value
gene id col2a1b
gene name col2a1,LOC103356561,LOC107668081,LOC107585898
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 22144371 ~ 22192386 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797741.1
ACGATTCATTGAAGGCAACGGGGACATAAAACTACAGCGTCTGACCCGAAGCGGTCGGTGCTGATTTTCTGCTGCAGGTCCGGGTCCTGCCGCTGGATTCCCCCATTGGTTTTTGGGAACTGTGACTGTCGAATGGTTTGGCTTTTGTaactgggaacacacacactaaatactGAGAGAAGCCTCCGATATCTTCGcacctttctttctccctcGCGGGCCCTGCATGTCTAATATTTAGACATGTTCAGCTTTATGGATTCCAGGACTGTACTGCTACTTGTAGCAACCCAAGTCTGTCTATTAACTGTTGTAAGATGTCAAGACGAGGACGACCaggaggatGTTATTAGCTGTACACAAGATGGACAGCGCTATAGTGACAAGGACGTATGGAAACCAGAGCCTTGtcgcatctgtgtgtgtgacactggaACCGTCCTGTGTGATGAAATTGTCTGCGAGGAGCTAAAAGACTGCCCAAAACCTGAAATCCCATTCGGAGAGTGTTGCCCCATCTGCGCAGCTGACCAGTCTCCACCCATTGGAGCGCCTGGAGCTAAGGGTCAGAAAGGTGAACCCGGAGACATTACCGATGTTGTAGGACCAAGAGGACCAAGTGGCCCAATGGGCCCACCAGGAGAGCAAGGACTCCGCGGAGCGAGAGGAGATAAGGGAGAGAAGGGAAGCCCTGGTCCCCGTGGTAGAGATGGTGAGCCCGGCACCCCCGGAAACCCCGGCCCCCCTGGACCTCCAGGACCTAATGGACCCCCTGGCCTTGGTGGAAACTTTGCTGCTCAGATGGCTGGTGGATTCGACGAGAAGGCTGGCGGCGCACAGATGGGTGTGATGCAAGGACCAATGGGCCCTATGGGTCCCAGAGGACCACCTGGCCCCACCGGATCACCTGGCCCACAAGGTTTCCAAGGCAACCCAGGAGAGGCTGGAGAGCCCGGACAGTCTGGCCCAATGGGTCCCCGTGGCCCCCCTGGACCTTCTGGAAAACCTGGAGATGATggTGAGGCTGGCAAACCTGGCAAACCAGGAGACCGTGGACCTGCTGGACCTCAGGGAGCTCGTGGATTCCCAGGAACTCCTGGCCTGCCTGGCATCAAGGGACACAGAGGTTATCCAGGTCTTGATGGTGCAAAGGGAGAGACTGGAGCGCTTGGGTCTAAGGGTGAGTCTGGTGCTCCTGGAGAGAATGGCGCTCCTGGACCTATGGGACCTCGTGGTTTGCCTGGTGAGAGAGGACGTCCTGGACCCAGTGGAGTTGCTGGCGCACGTGGAAATGATGGCTTGCCCGGTCCTGCTGGTCCCCCAGGCCCTGTCGGTACCTCTGGAGCTCCAGGCTTCCCTGGCTCTCCTGGTTCAAAGGGGGAAGCTGGTCCTACTGGTGCTCGTGGACCTGAGGGTGCTCAGGGACCCCGTGGAGAGTCAGGCACTCCTGGATCACCCGGACCTTCTGGCGCTTCTGGAAACCCTGGTACTGATGGTATCCCTGGAGCCAAAGGATCAGCTGGTGCTCCTGGTATCGCTGGTGCTCCTGGTTTCCCTGGACCTCGTGGGCCTCCCGGGCCTCAAGGAGCAACTGGACCTCTCGGGCCCAAAGGAACATCTGGAGACCCAGGTATCCCAGGATTCAAGGGAGAGGCTGGACCCAAAGGAGAAATTGGACCACCTGGTGTTCAGGGAGCTCATGGCCCACAAGGAGAAGAAGGCAAGAGAGGACCCAGGGGTGAGGCTGGTGCTGCTGGACCACTTGGACCTCctggagagagaGGAGCCCCCGGTAACCGTGGTTTCCCTGGTCAAGatggtctggctggtcccaagGGAGCCCCTGGTGAGCGTGGACCTGCTGGTGCCAGTGGTCCCAAGGGTGCCAACGGTGACCCTGGCCGTCCTGGAGAGTCTGGTCTGCCCGGTGCCAGAGGCCTGACTGGACGCCCTGGTGACGCTGGTCCTCAAGGCAAAGTTGGACCTTCTGGAGCTTCTGGTGAGGACGGTCGCCCAGGACCCCCCGGCCCACAGGGAGCCCGTGGACAGCCTGGTGTCATGGGATTCCCCGGACCCAAGGGAGCAACTGGTGAGCCTGGCAAGTCGGGAGAGAAAGGACTGGGTGGAGCTCCTGGTCTGAGAGGTCTGCCTGGAAAAGATGGAGAAACTGGAGCTGCTGGACCCCCCGGCCCCGCTGGCTCTgctggagagagaggagagcaagGACAGCCTGGTCCCTCAGGTTTCCAGGGTCTGCCTGGACCTCCCGGCCCCCCTGGTGAGGGAGGCAAGCCTGGAGACCAGGGTGTTCCTGGAGAGGGTGGAGCTGCTGGTGCTACTGGACCCAGAGGAGAGCGTGGTTTCCCCggagagagaggagctgccGGCCCTCAGGGTCTGCAGGGACCCCGAGGTCTGCCTGGAACTCCTGGAACTGACGGACCCAAGGGAGCCATTGGACCTGCTGGTACTGGTGGAGCTCAGGGACCCCCCGGCCTGCAGGGTATGCCCGGAGAGAGAGGAGCTTCTGGCATTCCTGGACCCAAAGGAGACAGAGGTGACCTTGGAGAGAAAGGACCTGAAGGTGCTCCCGGCAAAGACGGTGGTAGAGGTCTCACTGGTCCCATTGGTCCCCCTGGTCCTGGTGGCCCCAACGGTGAGAAGGGTGAATCTGGTCCTGCCGGTCCTTCTGGTGCTCCTGGTACCCGCGGTGCTCCTGGTGACAGGGGTGAAACTGGACCTCCTGGGCCTGCTGGATTTGCTGGACCCCCTGGTTCTGATGGTCAACCAGGAATCAAGGGAGAGCAGGGAGAATCTGGACAGAAGGGTGACGCTGGTGCCCCTGGACCCCAAGGACCCTCTGGTGCCCCTGGACCTGCAGGTCCTACCGGTGTTTTTGGACCTAAAGGTGCTCGTGGTGCTCAAGGACCTCCTGGTGCCACTGGTTTCCCTGGAGCTGCCGGCCGAGTTGGACCCCCTGGTCCCAATGGTAATCCTGGACCTGCTGGTCCTGCCGGCCCTTCCGGTAAAGATGGACCCAAGGGTGTGAGGGGAGATGGTGGACCCTCAGGCAGACAGGGTGACGCTGGGCTCCGCGGTGCTGCTGGGGCTCCTGGAGAGAAGGGAGATGCTGGAGAGGACGGTCCCCCTGGTCCCCTCGGTCCTTCAGGTCCCCAGGGTTTGGCTGGTCAGCGTGGTATCGTGGGTCTGCCAGGACAGCGTGGTGAGAGAGGTTTCCCTGGTCTGCCCGGACCTTCTgGTGAGCCCGGGAAGCAGGGAGCTCCTGGTGGCAGCGGAGACCGCGGACCCCCTGGACCTGTTGGACCACCTGGACTCACTGGACCTGCAGGAGAGCCTGgcagagagGGCAATCCTGGATCTGATGGACCTCCTGGTAGAGATGGTGCTACTGGAATCAAGGGTGAGCGTGGTAACACTGGTCCTGTTGGTGCTCCTGGAGCCATGGGCGCGCCTGGTGCTGCCGGCCCAGTTGGCCCCACTGGCAAACAGGGAGACCGAGGAGAGTCTgGTGCACAAGGACCTTCTGGACCTTCAGGGCCTGCTGGAGCCAGAGGAATGCCTGGACCCCAAGGACCTCGCGGTGACAAGGGTGAGGTTGGAGAGTCCGGTGAGCGAGGACAGAAGGGACACAGAGGCTTCACTGGTCTGCAGGGTCTGCCCGGACCTCCGGGTCAAGCTGGAGACCAGGGTGCTACTGGACCTGCTGGACCTTCTGGACAAAGAGGACCACCTGGACCTGTTGGCCCTGCTGGAAAGGATGGTGGAAACGGTCTGCCAGGACCCATTGGACCCCCTGGACCTCGTGGTCGCAGTGGAGAAACCGGTCCCTCTGGTCCCCCCGGAAACACCGGACCCCCTGGTCCTCCTGGTCCCCCTGGCCCTGGCATCGACATGTCCGCCTTCGCTGGTCTGGGTCAAACTGAAAAGTCCCCTGATCCTCTCAGGTACATGAGGGCCGACCAGGCTTCTGGAAACCTCCGTCAGCACGATGCTGAGGTCGACGCCACGCTCAAATCTCTCAACAACCAGATTGAGAACATCCGCAGCCCCGAGGGATCCAAGAAAAACCCGGCTCGCACCTGCAGAGACCTGAAGCTCTGCCATCCTGACTGGAAGAGCGgAGAGTACTGGATTGATCCCAACCAGGGCTGCACCGTCGATGCAATCAAGGTCTTCTGCAACATGGAGACAGGAGAGTCCTGCGTCAGACCGAAGCCTGCCAGTATCCCTCGCAAGAACTGGTGGTCCAGCAAGAGCAAGGACCGCAAACATGTCTGGTTCGGAGAGACGATGAATGGAGGTTTCCATTTCAGCTATGGTGATGACAGCCTGGCACCCAACACGGCTGCCATTCAGATGACTTTCCTGAGACTGCTGTCCACCGAAGCTTCTCAAAACCTCACCTACCACTGTAAGAACAGCGTGGCCTACATGGACGCCTCAGCGGGCAACCTGAAGAAGGCTGTGCTGCTGCAGGGCTCCAACGACGTGGAGATCAGAGCCGAGGGCAACAGCCGCTTCACTTACAGCGTGATGGAGGACGGCTGCACGaaacacacgGGACAGTGGGGCAAGACAGTGATCGAATACAGATCGCAGAAGACCTCTCGTCTGCCCATTGTAGACATTGCCCCCATGGATATTGGAGGAACAGACCAGGAGTTTGGAGTCGAAGTCGGAGCAGTCTGCTTCTTGTAAAGAACGAGGGAacgaaaagaa
>XM_039797742.1
ACGATTCATTGAAGGCAACGGGGACATAAAACTACAGCGTCTGACCCGAAGCGGTCGGTGCTGATTTTCTGCTGCAGGTCCGGGTCCTGCCGCTGGATTCCCCCATTGGTTTTTGGGAACTGTGACTGTCGAATGGTTTGGCTTTTGTaactgggaacacacacactaaatactGAGAGAAGCCTCCGATATCTTCGcacctttctttctccctcGCGGGCCCTGCATGTCTAATATTTAGACATGTTCAGCTTTATGGATTCCAGGACTGTACTGCTACTTGTAGCAACCCAAGTCTGTCTATTAACTGTTGTAAGATGTCAAGACGAGGACGACCGAGCGCCTGGAGCTAAGGGTCAGAAAGGTGAACCCGGAGACATTACCGATGTTGTAGGACCAAGAGGACCAAGTGGCCCAATGGGCCCACCAGGAGAGCAAGGACTCCGCGGAGCGAGAGGAGATAAGGGAGAGAAGGGAAGCCCTGGTCCCCGTGGTAGAGATGGTGAGCCCGGCACCCCCGGAAACCCCGGCCCCCCTGGACCTCCAGGACCTAATGGACCCCCTGGCCTTGGTGGAAACTTTGCTGCTCAGATGGCTGGTGGATTCGACGAGAAGGCTGGCGGCGCACAGATGGGTGTGATGCAAGGACCAATGGGCCCTATGGGTCCCAGAGGACCACCTGGCCCCACCGGATCACCTGGCCCACAAGGTTTCCAAGGCAACCCAGGAGAGGCTGGAGAGCCCGGACAGTCTGGCCCAATGGGTCCCCGTGGCCCCCCTGGACCTTCTGGAAAACCTGGAGATGATggTGAGGCTGGCAAACCTGGCAAACCAGGAGACCGTGGACCTGCTGGACCTCAGGGAGCTCGTGGATTCCCAGGAACTCCTGGCCTGCCTGGCATCAAGGGACACAGAGGTTATCCAGGTCTTGATGGTGCAAAGGGAGAGACTGGAGCGCTTGGGTCTAAGGGTGAGTCTGGTGCTCCTGGAGAGAATGGCGCTCCTGGACCTATGGGACCTCGTGGTTTGCCTGGTGAGAGAGGACGTCCTGGACCCAGTGGAGTTGCTGGCGCACGTGGAAATGATGGCTTGCCCGGTCCTGCTGGTCCCCCAGGCCCTGTCGGTACCTCTGGAGCTCCAGGCTTCCCTGGCTCTCCTGGTTCAAAGGGGGAAGCTGGTCCTACTGGTGCTCGTGGACCTGAGGGTGCTCAGGGACCCCGTGGAGAGTCAGGCACTCCTGGATCACCCGGACCTTCTGGCGCTTCTGGAAACCCTGGTACTGATGGTATCCCTGGAGCCAAAGGATCAGCTGGTGCTCCTGGTATCGCTGGTGCTCCTGGTTTCCCTGGACCTCGTGGGCCTCCCGGGCCTCAAGGAGCAACTGGACCTCTCGGGCCCAAAGGAACATCTGGAGACCCAGGTATCCCAGGATTCAAGGGAGAGGCTGGACCCAAAGGAGAAATTGGACCACCTGGTGTTCAGGGAGCTCATGGCCCACAAGGAGAAGAAGGCAAGAGAGGACCCAGGGGTGAGGCTGGTGCTGCTGGACCACTTGGACCTCctggagagagaGGAGCCCCCGGTAACCGTGGTTTCCCTGGTCAAGatggtctggctggtcccaagGGAGCCCCTGGTGAGCGTGGACCTGCTGGTGCCAGTGGTCCCAAGGGTGCCAACGGTGACCCTGGCCGTCCTGGAGAGTCTGGTCTGCCCGGTGCCAGAGGCCTGACTGGACGCCCTGGTGACGCTGGTCCTCAAGGCAAAGTTGGACCTTCTGGAGCTTCTGGTGAGGACGGTCGCCCAGGACCCCCCGGCCCACAGGGAGCCCGTGGACAGCCTGGTGTCATGGGATTCCCCGGACCCAAGGGAGCAACTGGTGAGCCTGGCAAGTCGGGAGAGAAAGGACTGGGTGGAGCTCCTGGTCTGAGAGGTCTGCCTGGAAAAGATGGAGAAACTGGAGCTGCTGGACCCCCCGGCCCCGCTGGCTCTgctggagagagaggagagcaagGACAGCCTGGTCCCTCAGGTTTCCAGGGTCTGCCTGGACCTCCCGGCCCCCCTGGTGAGGGAGGCAAGCCTGGAGACCAGGGTGTTCCTGGAGAGGGTGGAGCTGCTGGTGCTACTGGACCCAGAGGAGAGCGTGGTTTCCCCggagagagaggagctgccGGCCCTCAGGGTCTGCAGGGACCCCGAGGTCTGCCTGGAACTCCTGGAACTGACGGACCCAAGGGAGCCATTGGACCTGCTGGTACTGGTGGAGCTCAGGGACCCCCCGGCCTGCAGGGTATGCCCGGAGAGAGAGGAGCTTCTGGCATTCCTGGACCCAAAGGAGACAGAGGTGACCTTGGAGAGAAAGGACCTGAAGGTGCTCCCGGCAAAGACGGTGGTAGAGGTCTCACTGGTCCCATTGGTCCCCCTGGTCCTGGTGGCCCCAACGGTGAGAAGGGTGAATCTGGTCCTGCCGGTCCTTCTGGTGCTCCTGGTACCCGCGGTGCTCCTGGTGACAGGGGTGAAACTGGACCTCCTGGGCCTGCTGGATTTGCTGGACCCCCTGGTTCTGATGGTCAACCAGGAATCAAGGGAGAGCAGGGAGAATCTGGACAGAAGGGTGACGCTGGTGCCCCTGGACCCCAAGGACCCTCTGGTGCCCCTGGACCTGCAGGTCCTACCGGTGTTTTTGGACCTAAAGGTGCTCGTGGTGCTCAAGGACCTCCTGGTGCCACTGGTTTCCCTGGAGCTGCCGGCCGAGTTGGACCCCCTGGTCCCAATGGTAATCCTGGACCTGCTGGTCCTGCCGGCCCTTCCGGTAAAGATGGACCCAAGGGTGTGAGGGGAGATGGTGGACCCTCAGGCAGACAGGGTGACGCTGGGCTCCGCGGTGCTGCTGGGGCTCCTGGAGAGAAGGGAGATGCTGGAGAGGACGGTCCCCCTGGTCCCCTCGGTCCTTCAGGTCCCCAGGGTTTGGCTGGTCAGCGTGGTATCGTGGGTCTGCCAGGACAGCGTGGTGAGAGAGGTTTCCCTGGTCTGCCCGGACCTTCTgGTGAGCCCGGGAAGCAGGGAGCTCCTGGTGGCAGCGGAGACCGCGGACCCCCTGGACCTGTTGGACCACCTGGACTCACTGGACCTGCAGGAGAGCCTGgcagagagGGCAATCCTGGATCTGATGGACCTCCTGGTAGAGATGGTGCTACTGGAATCAAGGGTGAGCGTGGTAACACTGGTCCTGTTGGTGCTCCTGGAGCCATGGGCGCGCCTGGTGCTGCCGGCCCAGTTGGCCCCACTGGCAAACAGGGAGACCGAGGAGAGTCTgGTGCACAAGGACCTTCTGGACCTTCAGGGCCTGCTGGAGCCAGAGGAATGCCTGGACCCCAAGGACCTCGCGGTGACAAGGGTGAGGTTGGAGAGTCCGGTGAGCGAGGACAGAAGGGACACAGAGGCTTCACTGGTCTGCAGGGTCTGCCCGGACCTCCGGGTCAAGCTGGAGACCAGGGTGCTACTGGACCTGCTGGACCTTCTGGACAAAGAGGACCACCTGGACCTGTTGGCCCTGCTGGAAAGGATGGTGGAAACGGTCTGCCAGGACCCATTGGACCCCCTGGACCTCGTGGTCGCAGTGGAGAAACCGGTCCCTCTGGTCCCCCCGGAAACACCGGACCCCCTGGTCCTCCTGGTCCCCCTGGCCCTGGCATCGACATGTCCGCCTTCGCTGGTCTGGGTCAAACTGAAAAGTCCCCTGATCCTCTCAGGTACATGAGGGCCGACCAGGCTTCTGGAAACCTCCGTCAGCACGATGCTGAGGTCGACGCCACGCTCAAATCTCTCAACAACCAGATTGAGAACATCCGCAGCCCCGAGGGATCCAAGAAAAACCCGGCTCGCACCTGCAGAGACCTGAAGCTCTGCCATCCTGACTGGAAGAGCGgAGAGTACTGGATTGATCCCAACCAGGGCTGCACCGTCGATGCAATCAAGGTCTTCTGCAACATGGAGACAGGAGAGTCCTGCGTCAGACCGAAGCCTGCCAGTATCCCTCGCAAGAACTGGTGGTCCAGCAAGAGCAAGGACCGCAAACATGTCTGGTTCGGAGAGACGATGAATGGAGGTTTCCATTTCAGCTATGGTGATGACAGCCTGGCACCCAACACGGCTGCCATTCAGATGACTTTCCTGAGACTGCTGTCCACCGAAGCTTCTCAAAACCTCACCTACCACTGTAAGAACAGCGTGGCCTACATGGACGCCTCAGCGGGCAACCTGAAGAAGGCTGTGCTGCTGCAGGGCTCCAACGACGTGGAGATCAGAGCCGAGGGCAACAGCCGCTTCACTTACAGCGTGATGGAGGACGGCTGCACGaaacacacgGGACAGTGGGGCAAGACAGTGATCGAATACAGATCGCAGAAGACCTCTCGTCTGCCCATTGTAGACATTGCCCCCATGGATATTGGAGGAACAGACCAGGAGTTTGGAGTCGAAGTCGGAGCAGTCTGCTTCTTGTAAAGAACGAGGGAacgaaaagaa

Function

symbol description
col2a1 Enables MHC class II protein binding activity; platelet-derived growth factor binding activity; and proteoglycan binding activity. Involved in several processes, including collagen fibril organization; embryonic skeletal joint morphogenesis; and sensory perception of sound. Located in extracellular space. Part of collagen type II trimer. Implicated in Stickler syndrome (multiple); bone disease (multiple); cleft palate; eye disease (multiple); and multiple epiphyseal dysplasia with myopia and deafness.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030903 notochord development biological_process
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797741.1 True 4740 mRNA 0.60 54 22144371 22192386
XM_039797742.1 False 4530 mRNA 0.61 53 22144371 22192386

Neighbor

gene id symbol gene type direction distance location
LOC120558047 ppp1r1a,LOC102206106,LOC102311133,LOC101483072 coding upstream 100478 22006540 ~ 22043893 (+)
npffl npff coding upstream 143900 21997351 ~ 22000471 (+)
LOC120557365 NA coding upstream 204597 21926042 ~ 21939774 (+)
b9d2 b9d2 coding upstream 256192 21887158 ~ 21888179 (+)
tamm41 tamm41 coding upstream 851179 21285085 ~ 21293192 (+)
LOC120557368 LOC103356557,LOC104967292 coding downstream 28912 22221298 ~ 22252681 (+)
LOC120557376 LOC104966918 coding downstream 86196 22278582 ~ 22282983 (+)
tespa1 NA coding downstream 106390 22298776 ~ 22309762 (+)
igsf8 LOC103356551 coding downstream 162725 22355111 ~ 22370933 (+)
dctn2 dctn2 coding downstream 269105 22461491 ~ 22477265 (+)
G40840 NA non-coding upstream 211139 21911874 ~ 21933232 (+)
G40842 alas1 non-coding upstream 226560 21917243 ~ 21917811 (+)
G40804 NA non-coding upstream 366775 21713797 ~ 21777596 (+)
G40819 NA non-coding upstream 368954 21760799 ~ 21775417 (+)
G40755 hrh1 non-coding upstream 726038 21415729 ~ 21418333 (+)
G40904 NA non-coding downstream 9740 22202126 ~ 22202736 (+)
G40923 NA non-coding downstream 81688 22274074 ~ 22274301 (+)
LOC120557379 NA non-coding downstream 102568 22294954 ~ 22297812 (+)
G40948 NA non-coding downstream 196792 22389178 ~ 22425121 (+)
G41021 NA non-coding downstream 362231 22554617 ~ 22554845 (+)
itga7 itga7 other upstream 151760 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 800660 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 1995681 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 2220822 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 2285030 19851548 ~ 19859341 (+)
cbfa2t2 cbfa2t2 other downstream 1542562 23734948 ~ 23771932 (+)
znfx1 NA other downstream 1655661 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 2363139 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 3015770 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 3490021 25682407 ~ 25690935 (+)

Expression


Co-expression Network