LOC120557474 (traip)


Basic Information

Item Value
gene id LOC120557474
gene name traip
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7082265 ~ 7090752 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797830.1
GGGACTTGGCGTTTGAACGTACAGCGGGGAAACGGAACAGtcaattgtgtttttgttagcGAAGTTCTGTCTGATAGAGACAGTTTAACTCCACTAAAATGTCTTATTCCACACAGTATTAGGGATTCTTGATTTCATTACGAAGGACTGCGCAATAACTTAACATCCTTGTTTTGGAGATCCGTGTGACAGCAAGATGCCTATCCGAGCATATTGCACAATTTGCTCCGATTTCTTCGATCACTCCAGAGATGTCGCTGCCATCCACTGCGGACACACTTTCCACTATGAATGCCTTCTCCAGTGGTTTCAGACAGCCCCGACAAAAACCTGTCCACAATGTAGAAAACAGGTCAGCACCAGACACATTATCAGCAAGCTGTTCTTTGACATtggtggagaggaggagagcacAGCAGACCCTGAGTGCTTGCAGAATGATCTTGATCGAATGAAGGCACTTTTAAGCTCTAAAGAGCGAGACTGGCGGGATAAACAGAAGCTGGTGGACAGTTTGAAGGACACTGTGGACAAGCAGAGGAGAGACCTGGACAATGTACGGAAAGAGATTATGGAAAAGGAGATGCTCTGTTCTGCCCTCAGAAAACAGATGACATACCTGGAGACGCAACAGAATGAAACTCAGGCTGCCAAGGAGGAAGCCCGGAGACTCAGgaccaaaatgaaaacctttGAAAGCCTGGACATGTTGTTGCAGGGCCAGAGAGCAGAGGTGGAGTCCATGATCACAGATATGGGTGTCAGCCAGGCGGCAGTGGAGCAACTCTCAATCTACTGCATCTCGCTCAAAAAAGAGTATGATAATCTTAAAGGAAGCCTGAAGTCTTCGAATGACATGTGTGAGAAGCTGAAGAGAGAAGTGCTCACCTCAAACAACAAGTTACTCAAAGCCACAGTGGAGGTGAATCAGACCAAAGAGGACATGAAGTCCCTGCAGAACGATCTGGCCAACGCTGACAAAGAGATCTCTAGTCTGAAGAAGAAAGTGGAGTTTCTTCAGAGGACTCTGAGCACCCCGACACGGACAAATGAAGCCCTCAGTCGGCTCGTCTTTGAAAGCCCGGCCCCAATGGAGCTGAAGCAGCCTCGTCTCCACCAGCCTGCAGATAGCAAGGATATTGACCTCAACATGACTTACGACGTCCCTACGCCAGAGGATGTGGCCAAGAAGCCAATGCAGTTCCAATCCAAGAAGATGCGGCTTGATCCAGCAACgtTGTCCAAACACAGCGAGAAAAGTTCATCTCTAAGCAAGGCTCGAGATGAGGATGGATCCATGGATCCTTTTTTGAGGAACTCCCTCCTCTTCAGAAAAAAGACTTTCGGTAGCATGTTGGACCCTCAGAGGAAGCCCGGAGTTGTGAAAAGTGGTTACGATGGTTTAGGAGGACGTACTAAATTCATCCAACCTTCTCCTTTATCAGAGATTCGCCCGCTGATGAAAGCTAAAAGGAAAAAGGTAACCAGGCCTCAACCCAAGATTGCAACTTGCCTGACTCTGGACGGCTTCCTCGAGTAAATGTGGAGCTCTTCTTCCATGGATGCGGAGTCTAAGGTCAGAACGCTGTAGCTGTGTGAGGTAGCATGTTTGTGCTGCTCTGGCACACAGAACCAGCCTGGCAGCGGTTCTGccgctcagcaccaaacaggactCTCGGAATTAACTTTACCTAAAAGTAGTAACTGACCTCCCACTTAACGACGGATGCTGAGTTTTGGTGACATCAGCAAACCtgctgtacattttttttttttttttgttgactcTGACTTGTTTGTGGAGACTGTGTCTTGACCAGCCTTTGCGTTGGAGCCTATTCTTGTTGTCATGTGCGTGTCTGTATGCGTGAGACAAACCGACTTATTTGCGGACCATTCAAATGTCAGTGCTCTGTATTATGTCACTGATAATCACTGATGCATCTGTTGGCTATACCCGTCTTGTGAAACACCTTCATGTGGATATATACTTTaggtattattttatttttagcttCACTGGTCCTGCTAAATGTAAACCAACtcaaataataaacaatatttttttattaa
>XM_039797831.1
GGGACTTGGCGTTTGAACGTACAGCGGGGAAACGGAACAGtcaattgtgtttttgttagcGAAGTTCTGTCTGATAGAGACAGTTTAACTCCACTAAAATGTCTTATTCCACACAGTATTAGGGATTCTTGATTTCATTACGAAGGACTGCGCAATAACTTAACATCCTTGTTTTGGAGATCCGTGTGACAGCAAGATGCCTATCCGAGCATATTGCACAATTTGCTCCGATTTCTTCGATCACTCCAGAGATGTCGCTGCCATCCACTGCGGACACACTTTCCACTATGAATGCCTTCTCCAGTGGTTTCAGACAGCCCCGACAAAAACCTGTCCACAATGTAGAAAACAGGTCAGCACCAGACACATTATCAGCAAGCTGTTCTTTGACATtggtggagaggaggagagcacAGCAGACCCTGAGTGCTTGCAGAATGATCTTGATCGAATGAAGGCACTTTTAAGCTCTAAAGAGCGAGACTGGCGGGATAAACAGAAGCTGGTGGACAGTTTGAAGGACACTGTGGACAAGCAGAGGAGAGACCTGGACAATGTACGGAAAGAGATTATGGAAAAGGAGATGCTCTGTTCTGCCCTCAGAAAACAGATGACATACCTGGAGACGCAACAGAATGAAACTCAGGCTGCCAAGGAGGAAGCCCGGAGACTCAGgaccaaaatgaaaacctttGAAAGCCTGGACATGTTGTTGCAGGGCCAGAGAGCAGAGGTGGAGTCCATGATCACAGATATGGGTGTCAGCCAGGCGGCAGTGGAGCAACTCTCAATCTACTGCATCTCGCTCAAAAAAGAGTATGATAATCTTAAAGGAAGCCTGAAGTCTTCGAATGACATGTGTGAGAAGCTGAAGAGAGAAGTGCTCACCTCAAACAACAAGTTACTCAAAGCCACAGTGGAGGTGAATCAGACCAAAGAGGACATGAAGTCCCTGCAGAACGATCTGGCCAACGCTGACAAAGAGATCTCTAGTCTGAAGAAGAAAGTGGAGTTTCTTCAGAGGACTCTGAGCACCCCGACACGGACAAATGAAGCCCTCAGTCGGCTCGTCTTTGAAAGCCCGGCCCCAATGGAGCTGAAGCAGCCTCGTCTCCACCAGCCTGCAGATAGCAAGGATATTGACCTCAACATGACTTACGACGTCCCTACGCCAGAGGATGTGGCCAAGAAGCCAATGCAGTTCCAATCCAAGAAGATGCGGCTTGATCCAGCAACgtTGTCCAAACACAGCGAGAAAAGTTCATCTCTAAGCAAGGCTCGAGATGAGGATGGATCCATGGATCCTTTTTTGAGGAACTCCCTCCTCTTCAGAAAAAAGACTTTCGGTAGCATGTTGGACCCTCAGAGGAAGCCCGGAGTTGTGAAAAGTGGTTACGATGGTTTAGGAGGACGTACTAAATTCATCCAACCTTCTCCTTTATCAGAGATTCGCCCGCTGATGAAAGCTAAAAGGAAAAAGGTAACCAGGCCTCAACCCAAGATTGCAACTTGCCTGACTCTGGACGGCTTCCTCGAGTAAATGTGGAGCTCTTCTTCCATGGATGCGGAGTCTAAGATTCGTGGACACGGTGGCTGCCTGCGCCACGGCTTTGAAGCTGCGCTTTCTCTTCTGGACGTTCTGCTCCGGGTGGAAGATGATGACGTAGACCTTGGGGATGTAGAGCATG

Function

symbol description
traip Predicted to enable metal ion binding activity. Human ortholog(s) of this gene implicated in Seckel syndrome 9. Orthologous to human TRAIP (TRAF interacting protein).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRAIP

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11985 TRAIP, TRIP; TRAF-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797830.1 True 2073 mRNA 0.46 16 7082265 7089109
XM_039797831.1 False 1688 mRNA 0.49 17 7082265 7090752

Neighbor

gene id symbol gene type direction distance location
sema3fb LOC103371090,LOC104933620 coding upstream 140653 6882145 ~ 6941612 (+)
arl8bb arl8b,arl8a,LOC107095653,LOC105934196,LOC106565753,LOC103355426 coding upstream 295998 6775726 ~ 6786267 (+)
LOC120556653 naaa coding upstream 311990 6767012 ~ 6770275 (+)
bhlhe40 bhlhe40,LOC104959416 coding upstream 321783 6756944 ~ 6760482 (+)
itpr1b LOC102304252,LOC102203222,LOC100692694,LOC103355429 coding upstream 328635 6648315 ~ 6753630 (+)
gata1a LOC100696076,LOC102798593,LOC101485806,LOC102310803 coding downstream 221982 7312734 ~ 7317082 (+)
mafbb mafb,LOC104945735 coding downstream 244714 7335466 ~ 7337312 (+)
si:ch211-232b12.5 LOC104939380,LOC103365892,LOC100697406,LOC102796719 coding downstream 271188 7361940 ~ 7377650 (+)
snai1a LOC104939346,LOC103358824,LOC108244374,LOC107385873 coding downstream 322037 7412789 ~ 7416280 (+)
myh7ba LOC103358826,LOC104966023,LOC101480568,LOC102289245 coding downstream 343458 7434210 ~ 7449018 (+)
G36370 NA non-coding upstream 126410 6955533 ~ 6955855 (+)
G36369 NA non-coding upstream 128358 6953452 ~ 6953907 (+)
G36368 NA non-coding upstream 131216 6948079 ~ 6951049 (+)
G36353 NA non-coding upstream 309095 6772736 ~ 6773170 (+)
LOC120556885 NA non-coding upstream 500962 6578980 ~ 6581303 (+)
G36408 NA non-coding downstream 23697 7114449 ~ 7117220 (+)
G36409 NA non-coding downstream 29144 7119896 ~ 7121438 (+)
G36411 NA non-coding downstream 32548 7123300 ~ 7123519 (+)
G36412 NA non-coding downstream 34190 7124942 ~ 7125628 (+)
G36424 NA non-coding downstream 55365 7146117 ~ 7147050 (+)
setmar LOC100698471 other upstream 443742 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 776122 6139463 ~ 6306143 (+)
prok2 prok2,LOC103355444 other upstream 975113 6104613 ~ 6107152 (+)
rybpb rybp other upstream 1027049 6035072 ~ 6055216 (+)
G36156 LOC103374102 other upstream 1157865 5920924 ~ 5924400 (+)
si:dkey-245f22.3 NA other downstream 92447 7183199 ~ 7187214 (+)
G36458 LOC100304472,LOC107385856 other downstream 119244 7209996 ~ 7272368 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other downstream 198155 7288907 ~ 7306343 (+)
G36744 NA other downstream 1137010 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 2669481 9760233 ~ 9856656 (+)

Expression


Co-expression Network