LOC120557477 (LOC103375199,LOC104930306,LOC101473264,LOC108251201)


Basic Information

Item Value
gene id LOC120557477
gene name LOC103375199,LOC104930306,LOC101473264,LOC108251201
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 35426361 ~ 35452319 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797834.1
ATGGCGTTGGTCAGCCATATTGTCTCTGATACAGCAGAAATCACACActggcacacacatacacacagaggcgACGGAGGGAGGCGAGGATCGTTGGCTTCACGAAAGTCATCTTACTGGGAAGCATTTCGGTCGTCGGATTGATCAAGGGGCTATCCCACCTTGCCCCTGGTGGCCCCTCCCCCCCCATCCTCAGGCAAAGcctcccccccccatccccaaaCCCTTGCCCCGTTGGGTCAACCCCTAccttccctcctcttcctccctctctcccaccCTTCCTCCCTGTACTTCCTCTGCTGCAGTAAAATCTCCCCATCATCTCTGCCAAGCTGTCGGACATGTCGGGACCCGTGCCAAGCCGGGCCCGAGTGTACACCGAGGTCAACACTCACCGGCCCAGGGAGTACTGGGACTATGAGTCTCACGTGGTTGAATGGggAAACCAGGATGACTTTCAATTGGTGCGTAAGCTAGGGCGTGGCAAGTACAGTGAAGTCTTTGAAGCAATCAACATCACTAATAATGAGAAGGTGGTGGTGAAGATACTCAAGcctgtgaaaaaaaagaaaatcaagcgTGAGATCAAGATTTTGGAGAACCTGCGTGGAGGTCCTAACATAATCTCCCTCATCGATATTGTGAAAGACCCAGTATCCAGGACGCCTGCCTTGGTCTTTGAGCATGTTAACAACACAGACTTCAAGCAACTGTACCAGACCCTGACAGACTATGACATCCGGTTCTACATGTACGAGATCCTCAAGGCCCTGGACTACTGCCACAGCATGGGAATCATGCATAGAGATGTAAAGCCACATAATGTGATGATTGATCATGAACACCGCAAGTTGCGCCTTATTGACTGGGGTCTGGCTGAGTTTTACCACCCAGGACAGGAGTACAATGTCAGAGTCGCCTCCCGCTACTTTAAGGGACCCGAGCTTCTGGTGGACTATCAGaTGTATGACTACAGTCTGGATATGTGGAGCTTGGGCTGTATGTTGGCAAGCATGATCTTCAGGAAGGAGCCTTTCTTCCATGGACATGATAACTATGACCAGTTGGTGAGAATAGCGAAGGTTCTGGGGACTGAAGACCTCTACGACTACATTGACAAGTACAATATTGAGCTGGAACCTCGTTTCAACGACATCCTGGGAAGGCATTCTCGTAAGCGATGGGAGCGGTTTGTCCACAGTGAGAACCAGCACCTGGTCAGCCCCGAGGCTTTGGATTTCCTGGACAAGCTGCTGCGATATGACCACCAGGCCCGGCTAACTGCCCGCGAGGCCATGGATCACCCTTACTTTTTCCCCATCGTGAAAGATCAGTCTCGTGTGGCCGGAGCCAACCTGCCCAGTGGGAATACAGCTGTTTGCACAGCCAACATGATCACTGGTATCTCTGCCTTGCCAGCGTCCACTGCCCTGGGCCCTTTCACTGGCTCGCCGGTCCTCTCTGCCTCCACCAACATCCTGAGCACCCCGGTGGCAGCTGCTGTCGGCGCCCCGCAGTGATACCCCACCCAAATCACTACACTCACCACCTTCTCCCCAGGCTCTCCAACACCACCTAGCATAGGGGAGGGGGGTTACTAACCTACTGGCTGAAGGAAGCCGTCGTCTGAGAAAAGAACGATGTTTTTCCGTTCCTTTTCCTCCTAAAATGAACTTACAAGT
>XM_039797835.1
ATGGCGTTGGTCAGCCATATTGTCTCTGATACAGCAGAAATCACACActggcacacacatacacacagaggcgACGGAGGGAGGCGAGGATCGTTGGCTTCACGAAAGTCATCTTACTGGGAAGCATTTCGGTCGTCGGATTGATCAAGGGGGCAAAGcctcccccccccatccccaaaCCCTTGCCCCGTTGGGTCAACCCCTAccttccctcctcttcctccctctctcccaccCTTCCTCCCTGTACTTCCTCTGCTGCAGTAAAATCTCCCCATCATCTCTGCCAAGCTGTCGGACATGTCGGGACCCGTGCCAAGCCGGGCCCGAGTGTACACCGAGGTCAACACTCACCGGCCCAGGGAGTACTGGGACTATGAGTCTCACGTGGTTGAATGGggAAACCAGGATGACTTTCAATTGGTGCGTAAGCTAGGGCGTGGCAAGTACAGTGAAGTCTTTGAAGCAATCAACATCACTAATAATGAGAAGGTGGTGGTGAAGATACTCAAGcctgtgaaaaaaaagaaaatcaagcgTGAGATCAAGATTTTGGAGAACCTGCGTGGAGGTCCTAACATAATCTCCCTCATCGATATTGTGAAAGACCCAGTATCCAGGACGCCTGCCTTGGTCTTTGAGCATGTTAACAACACAGACTTCAAGCAACTGTACCAGACCCTGACAGACTATGACATCCGGTTCTACATGTACGAGATCCTCAAGGCCCTGGACTACTGCCACAGCATGGGAATCATGCATAGAGATGTAAAGCCACATAATGTGATGATTGATCATGAACACCGCAAGTTGCGCCTTATTGACTGGGGTCTGGCTGAGTTTTACCACCCAGGACAGGAGTACAATGTCAGAGTCGCCTCCCGCTACTTTAAGGGACCCGAGCTTCTGGTGGACTATCAGaTGTATGACTACAGTCTGGATATGTGGAGCTTGGGCTGTATGTTGGCAAGCATGATCTTCAGGAAGGAGCCTTTCTTCCATGGACATGATAACTATGACCAGTTGGTGAGAATAGCGAAGGTTCTGGGGACTGAAGACCTCTACGACTACATTGACAAGTACAATATTGAGCTGGAACCTCGTTTCAACGACATCCTGGGAAGGCATTCTCGTAAGCGATGGGAGCGGTTTGTCCACAGTGAGAACCAGCACCTGGTCAGCCCCGAGGCTTTGGATTTCCTGGACAAGCTGCTGCGATATGACCACCAGGCCCGGCTAACTGCCCGCGAGGCCATGGATCACCCTTACTTTTTCCCCATCGTGAAAGATCAGTCTCGTGTGGCCGGAGCCAACCTGCCCAGTGGGAATACAGCTGTTTGCACAGCCAACATGATCACTGGTATCTCTGCCTTGCCAGCGTCCACTGCCCTGGGCCCTTTCACTGGCTCGCCGGTCCTCTCTGCCTCCACCAACATCCTGAGCACCCCGGTGGCAGCTGCTGTCGGCGCCCCGCAGTGATACCCCACCCAAATCACTACACTCACCACCTTCTCCCCAGGCTCTCCAACACCACCTAGCATAGGGGAGGGGGGTTACTAACCTACTGGCTGAAGGAAGCCGTCGTCTGAGAAAAGAACGATGTTTTTCCGTTCCTTTTCCTCCTAAAATGAACTTACAAGT
>XM_039797836.1
AGATGGCGTTGGTCAGCCATATTGTCTCTGATACAGCAGAAATCACACActggcacacacatacacacagaggcgACGGAGGGAGGCGAGGATCGTTGGCTTCACGAAAGTCATCTTACTGGGAAGCATTTCGGTCGTCGGATTGATCAAGGGGCTATCCCACCTTGCCCCTGGTGGCCCCTCCCCCCCCATCCTCAGGCAAAGcctcccccccccatccccaaaCCCTTGCCCCGTTGGGTCAACCCCTAccttccctcctcttcctccctctctcccaccCTTCCTCCCTGTACTTCCTCTGCTGCAGTAAAATCTCCCCATCATCTCTGCCAAGCTGTCGGACATGTCGGGACCCGTGCCAAGCCGGGCCCGAGTGTACACCGAGGTCAACACTCACCGGCCCAGGGAGTACTGGGACTATGAGTCTCACGTGGTTGAATGGggAAACCAGGATGACTTTCAATTGGTGCGTAAGCTAGGGCGTGGCAAGTACAGTGAAGTCTTTGAAGCAATCAACATCACTAATAATGAGAAGGTGGTGGTGAAGATACTCAAGcctgtgaaaaaaaagaaaatcaagcgTGAGATCAAGATTTTGGAGAACCTGCGTGGAGGTCCTAACATAATCTCCCTCATCGATATTGTGAAAGACCCAGTATCCAGGACGCCTGCCTTGGTCTTTGAGCATGTTAACAACACAGACTTCAAGCAACTGTACCAGACCCTGACAGACTATGACATCCGGTTCTACATGTACGAGATCCTCAAGGCCCTGGACTACTGCCACAGCATGGGAATCATGCATAGAGATGTAAAGCCACATAATGTGATGATTGATCATGAACACCGCAAGaTGTATGACTACAGTCTGGATATGTGGAGCTTGGGCTGTATGTTGGCAAGCATGATCTTCAGGAAGGAGCCTTTCTTCCATGGACATGATAACTATGACCAGTTGGTGAGAATAGCGAAGGTTCTGGGGACTGAAGACCTCTACGACTACATTGACAAGTACAATATTGAGCTGGAACCTCGTTTCAACGACATCCTGGGAAGGCATTCTCGTAAGCGATGGGAGCGGTTTGTCCACAGTGAGAACCAGCACCTGGTCAGCCCCGAGGCTTTGGATTTCCTGGACAAGCTGCTGCGATATGACCACCAGGCCCGGCTAACTGCCCGCGAGGCCATGGATCACCCTTACTTTTTCCCCATCGTGAAAGATCAGTCTCGTGTGGCCGGAGCCAACCTGCCCAGTGGGAATACAGCTGTTTGCACAGCCAACATGATCACTGGTATCTCTGCCTTGCCAGCGTCCACTGCCCTGGGCCCTTTCACTGGCTCGCCGGTCCTCTCTGCCTCCACCAACATCCTGAGCACCCCGGTGGCAGCTGCTGTCGGCGCCCCGCAGTGATACCCCACCCAAATCACTACACTCACCACCTTCTCCCCAGGCTCTCCAACACCACCTAGCATAGGGGAGGGGGGTTACTAACCTACTGGCTGAAGGAAGCCGTCGTCTGAGAAAAGAACGATGTTTTTCCGTTCCTTTTCCTCCTAAAATGAACTTACAAGT

Function

NR:

description
PREDICTED: casein kinase II subunit alpha-like

GO: NA

KEGG:

id description
K03097 CSNK2A; casein kinase II subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797834.1 True 1685 mRNA 0.53 13 35426363 35452319
XM_039797835.1 False 1641 mRNA 0.52 13 35426363 35452319
XM_039797836.1 False 1576 mRNA 0.53 12 35426361 35452319

Neighbor

gene id symbol gene type direction distance location
LOC120556789 LOC104930304,LOC100703713,LOC103370810,LOC102215223 coding upstream 107192 35316477 ~ 35319169 (+)
LOC120556883 LOC104930311,LOC103370811,LOC104960357,LOC100711115,LOC101474327 coding upstream 147927 35275097 ~ 35278434 (+)
ube2v1 LOC103133159,LOC106912622,LOC102222270,LOC103465507,LOC104930303,LOC106519068 coding upstream 226365 35163484 ~ 35199996 (+)
LOC120557490 NA coding upstream 420233 35004942 ~ 35006128 (+)
LOC120557093 NA coding upstream 1055267 34370229 ~ 34371094 (+)
tp53rk tp53rk coding downstream 18675 35470994 ~ 35473326 (+)
LOC120556919 NA coding downstream 65419 35517738 ~ 35519948 (+)
sypl2a LOC103367888 coding downstream 730273 36182592 ~ 36210487 (+)
atxn7l2a atxn7l2,LOC103374593 coding downstream 763766 36216085 ~ 36242866 (+)
LOC120557073 LOC103374592,LOC100706250,LOC102300861,LOC101476702,LOC102207203,LOC102780650 coding downstream 791338 36243657 ~ 36249486 (+)
LOC120556905 NA non-coding upstream 87785 35338003 ~ 35338576 (+)
G43811 NA non-coding upstream 199713 35226402 ~ 35226648 (+)
LOC120557494 NA non-coding upstream 421593 35003472 ~ 35004768 (+)
G43737 NA non-coding upstream 427624 34996613 ~ 34998737 (+)
G43729 LOC100711384,LOC101475072,LOC102214007,LOC103373511 non-coding upstream 464178 34960653 ~ 34962183 (+)
G43859 NA non-coding downstream 6388 35458707 ~ 35459016 (+)
G43874 NA non-coding downstream 77514 35529833 ~ 35530044 (+)
G43877 NA non-coding downstream 88156 35540475 ~ 35541252 (+)
LOC120556868 NA non-coding downstream 105332 35557651 ~ 35560888 (+)
G43893 NA non-coding downstream 132882 35585201 ~ 35585406 (+)
G43656 NA other upstream 759179 34665236 ~ 34667182 (+)
LOC120557806 LOC105901862,LOC101061984,LOC103047442 other upstream 2080555 33340284 ~ 33345806 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other upstream 2089594 33262195 ~ 33336767 (+)
G43277 NA other upstream 2214043 33187738 ~ 33212318 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other upstream 2385050 33037934 ~ 33041311 (+)
LOC120556915 NA other downstream 11453 35463772 ~ 35486235 (+)
G43924 NA other downstream 211824 35664143 ~ 35666041 (+)
trnac-gca_18 NA other downstream 510220 35962539 ~ 35962610 (+)
fezf2 fezf2 other downstream 1250936 36703255 ~ 36711295 (+)
plekha6 plekha6 other downstream 2508387 37960706 ~ 38096072 (+)

Expression


Co-expression Network