LOC120557499 (LOC102289810)


Basic Information

Item Value
gene id LOC120557499
gene name LOC102289810
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17965362 ~ 17978602 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797894.1
GTCCTTgtctgtttaagtttaaaagACAGTTTGAGCTGCCTGGGCTGCACTCTGGTGGAGCCATCATGGAGAGAGCTGTGGTGCAAGTCACCCTCTTTGGGCTGCTGCTGGTTTTGGCTAGCACACTACCAAACAAGGACGACTGGAACATCTACAGCTTTCACATCAACTCCACAGTGACCAGTCGTTATGCAACCACGGTCATCACAAGCCGCGTGGCCAATCGCATGGACGACTCAAAGGAAATAGAGTTCCAGGTCCGGATTCCCAAGAACGCCTTCATCAGTAAATTCAGAATGTTTATAGATGACCAATGGTACGATGGTGTTGTGAAAGGTAAAGAGAAAGCTCAGCAGCAGTACACTGAGGCTGTGTCCCATGGCCAAAGCGCTGGGCTTGTCAGTTCTGTAGGGAGGACCCTCGAGGAATTTAAGACCTCTGTGACTGTGGCTGCCCACAAAAAGGTCACCTTTGAACTCACATATGAGGAGCTGCTGAAACGCAAGCTTGGCAAGTACGAGCTGCAAATCCACGCTCGACCCATGCAGCCTGTCAAAGACTTAAAGGTTGAtgtgtacattaatgagaaagCTGGCATCAATTTCATCGAGGTTAAAGGAGGATTAAGCACCAAAGCCCTGGCTAATGCTATCACCAGAACACATGCAGACAAACAGGCGTGGGTGTATTTCTACCCAACAGAGGaccaacagaaaacatgtgATGGCTGTGGAGAGCAGGGTATGAATGGAGATCTGGTTATTGTTTATGACGTCAACAGGGACACCTCACTTGGAGACATCAAGACATCAGCTGGATACTTTGTTCATCACTTTGCTCCATCTAGTCTTTCCCGCATACCAAAAAATGTTGTCTTCGTTATTGATCAAAGTGGCTCAATGAGTGGCAGAAAAATGCAACAGACCCGAATTGCATTAATCCACATCTTGAACGACCTGGCAGAGGATGACCACTTTGGTCTTATCACTTTTGATAGCAACATTTTTCACTGGAAAAGAGAACTTGTTCAGGCCAACAAGAAAAACCTGGAGAGTGCTAAGACATTTGCACAGAATATTCAAGCTAGAACAACCACAGACATTAACGCAGCAGTGTTGGAAGGAGCACGTATGCTGAATGCACATCCCAGAGAAGGTTCAGCGTCTATCGTCATACTTCTCACTGATGGAGATCCAACCTCAGGGGAGACAAATCTTGAACGAATACAATCAAATGTCAGAAGGGATATTGCAGACAAGTTCCCACTCTACTGTCTTGGTTTTGGTCATGATGTCAATTTTGAGTTCCTTGAGAAGATGTCGCTGCAGAACAATGGTGTGGCACGACGGATTTACGAACACTCTGACGCTGACTTACAGCTCAAGGGTTTCTATGACGAGGTGGCCACTCCTCTGTTGACAGATGTGACAATGATCTATAATGGAGGGACCAATCTAACCCAGACTAACTTCAGCCAGTATTATAATGGCTCTGAGATTGTGGTGGCCGGTCAGATCACTGACAACGACATTGAAACCTTCACTCCACAAGTTGTAGCCATTTCGAGGGATAGAAAAGTGACGTTTTCTGACACAAACGCCACCATGGAGTACACTGGCACAGATTTTGACAGCCACATCCAGAGGGTTTGGGCCTACCTCACAGTCAAACAGCTTCTGGAGAAAGAGCTGCTGTTATCTGGACCTGAGAAGGAGAATGTGAAGAAAGAGGCGTTGGAGCTGTCGCTGAAGTACAGCTTTGTAACCCCACTTACATCCATGGTGGTCACCAAGCCTCTAGGGGAGAAAACAGATGTGCTCCATAAACCTAAGGAAGGTGGAACAACACAAGGACACAGCACTGGAGTCCCCTTTCCACCCCCAGTCCAACCCTCCTGGGCATCAATCATTCCAGCCTTCCACAATGGCTTGCAGGGGATGCCAGGGATATCACGCTTTACAGACGCCTATGATGTCTTTGATGACTTTGTGGGAGCAGATGATGTTGATTCTGATGATTATGAAGACGCAATGATTGTGCCTGACAAAACAACTAATGTTCCTCTTTCCCACAGGTTTCTGCTAAAAACTGAGAATCTGTCTCTTCCACTCTGCTTTGATGTCACTGGAGATGTTCGTCTTAAACTACTTCACCATCCCAACAGGGAGCTGTCTGTGAATGGTGAGCTTGATACAGTAACGAATGGAGGCTTCAGAAGGATTGTCATCCACTTCAAGACTGACCTTTATGTTGAGGTTGACACCAATGTCATCACTGTACGAGAGGGACAGACACTGACACGCCACACTGGACAGGATCTCATCACAGCTGGAAGTTTGACAGTGATTAGGCGGAACAAGGAAATAGATGTTGCAGCTGGAGACACACGCATGGTCATCTATATTCATGAGAAGGATGGCGTGGGATTCCTCTGGCCGGTTTTGAGACAGCAGCCACTGGACAACAACGTTACAGGAATCATAGCTCTAAAGCCAGCAGTTTATGAGGAAGTGCAACAAACTCCCTCAACAAAACTTAAGATCAAAGACCAGGAGATTGACGTTACCAGGTCCAATGCTTTTGACTACAGTATAGTCTCTCCACCGACACTGGACTGCTGGCTCATGTCTGTGGAGTCTGTCCTGCAGAGACACCTGGATGATTTCATCGTTACTCAACTTTAACTGGGAATTATGTTGAATCACTTGCAAAGatttcattttaaagaaaaaaatgcaaacactGATTCAACTTGAAACAAACTTTTCACCTGTTACTAACAAATAAATAGTATCCCCGATC

Function

NR:

description
PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797894.1 True 2802 mRNA 0.46 21 17965362 17978602

Neighbor

gene id symbol gene type direction distance location
LOC120557497 LOC102289810,LOC102203785,LOC102791845 coding upstream 3636 17951089 ~ 17961726 (+)
LOC120557498 NA coding upstream 17524 17930482 ~ 17947838 (+)
card19 card19 coding upstream 71097 17889229 ~ 17894265 (+)
LOC120558252 NA coding upstream 71942 17893293 ~ 17893420 (+)
LOC120557366 LOC103359651,LOC102211705,LOC101487058,LOC102294841,LOC102795823 coding upstream 76783 17874104 ~ 17888579 (+)
LOC120556720 NA coding downstream 3883 17982485 ~ 17998537 (+)
LOC120557500 NA coding downstream 21330 17999932 ~ 18007378 (+)
LOC120556657 LOC104967522,LOC103359687 coding downstream 28854 18007456 ~ 18012488 (+)
rad54l2 LOC103359734 coding downstream 179587 18158189 ~ 18172130 (+)
rassf1 LOC104967512 coding downstream 199141 18177743 ~ 18187751 (+)
G39665 NA non-coding upstream 111996 17852516 ~ 17853366 (+)
G39654 NA non-coding upstream 179552 17785259 ~ 17785810 (+)
G39638 NA non-coding upstream 229456 17735486 ~ 17735906 (+)
G39633 NA non-coding upstream 243014 17715412 ~ 17722348 (+)
G39630 NA non-coding upstream 274786 17689804 ~ 17690576 (+)
G39861 NA non-coding downstream 470245 18448847 ~ 18452500 (+)
LOC120557393 NA non-coding downstream 565553 18544155 ~ 18547192 (+)
G39925 NA non-coding downstream 591989 18570591 ~ 18570983 (+)
G39926 NA non-coding downstream 595080 18573682 ~ 18573909 (+)
G39927 NA non-coding downstream 595380 18573982 ~ 18574211 (+)
wnk2 wnk2,LOC104946158 other upstream 35244 17904698 ~ 17930118 (+)
LOC120556838 NA other upstream 231351 17720441 ~ 17734011 (+)
G39581 LOC104949003,LOC103357913 other upstream 356146 17607930 ~ 17609216 (+)
LOC120557637 minos1,LOC103357934 other upstream 587802 17371483 ~ 17377560 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other upstream 767145 17193151 ~ 17198217 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other downstream 210980 18189582 ~ 18194911 (+)
LOC120557740 acy1 other downstream 237104 18215706 ~ 18226578 (+)
oxtrl LOC104920519,LOC103360274,LOC100702815,LOC102207462,LOC102295060 other downstream 1317657 19296259 ~ 19314826 (+)
G40164 LOC103360294,LOC104965627,LOC100702547 other downstream 1346227 19324829 ~ 19326625 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 1446264 19424866 ~ 19426456 (+)

Expression


Co-expression Network