hmces (hmces)


Basic Information

Item Value
gene id hmces
gene name hmces
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8450701 ~ 8453316 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797936.1
AAACACACAAGTACTTAACAGTctatgacacagacacacatgaacAAGCACACGCTcataacataatacaataaGGGCATcttaactatatatattttaaaacactAGAAAACAGGTGGCCGGGAAGTTCCCGTAAAATGTGTGGAAGAACTGCGTGTACTCTTGCTCCTGACGAGGTGAGCCGAGCCTGCTCCTACAGAAACCGAGGAGGGCAGCGTAGACAGCCCCGCTGGAGGGATGGAGATACGGACAAATACCAACCCTCTTACAACAAGAGCCCACAGTCTCTGAGTCCCGTCCTGCTTTCCCAGAGGCATTTTGATAAGAATGCTCCGGTTGATGAGTGTGTGTTGGCCTCCATGCGTTGGGGCCTGGTACCTGCCTGGTTCAAGGAGAATGACCCGAGCAAGATGCAAtacagcaccaacaactgccGCAGTGAGAATatattggagaaaaaaacatacaagGACCCTCTGATAAAAGGGCAGCGCTGCGTGATCCTGGCTGATGGCTTTTAtgagtggaggaggaaggaaaaagACAAGCAGCCTTTCTTCATATACTTCCCTCAGGCTCAGGGAACCAGTCATGAGAAAACCGAGGATCACCCCACAAGCCCAGCTTGCAATAAGGAGAATTCAGAGACAGTGTGCCCTCCAGAGGAGGCCTCCCATGACTTGACAGAGGGAGGAGAAGCACCAGGTGAGTGGACTGGATGGAAGTTGCTGACTATGGCTGGACTGTTTGACTGCTGGACACCTCCAGGTGGTGGAGAACCCCTTTACACATACAGTGTAATCACTGTTAATGCTTCCCCAAGCCTGGAAAGCATCCATGATAGgATGCCAGCAATCCTGGATGGAGAGGAAGAAGTGAGAAGATGGCTGGATTTTGGAGATGTGAAGTCTCTAGATGCCTTGAAACTGCTCCAGTCTAAAAACACTTTGACTTTTCATCCTGTCTCTCAGCTAGTAAACAACTCCCGCAACAACTCTCCAGAGTGCCTTCAGCCAGTTGATCTCAAAAGCAAAAAGGAGCCCAAGCCCACAGCCAGCAGTAAGATGATGATGAGCTGGCTGACAAGCAGCACACCTTCAAAGAGGAAGGAGCCCAACACATGTGGGAGTAAAGAAGAGAGCGAAAGCAAAAAGGTTCAGTGCAGGTCTACAGGAGCACTTCACCAGTGGCTTCAGGGAGCTAATAAGAAACCAAGAGCCAAATGAAGATTTGAACTGGGACTAAAAACTCTGCAGTTTTTAAAAGAGCATTTAGGCATTTTTATTCCATTACTATTTTGAcagtttttgaaaaatgtatgcTTTTGCTTAGTAACttttaaatgcaataaaaaaatgctACACAGATACTTATACTATATTTAAAATTGTTATCAATAAATGTCAGAAATAAACACAGCATGCTTTA

Function

symbol description
hmces Predicted to enable peptidase activity and single-stranded DNA binding activity. Predicted to act upstream of or within cellular response to DNA damage stimulus; protein-DNA covalent cross-linking; and proteolysis. Orthologous to human HMCES (5-hydroxymethylcytosine binding, ES cell specific).

NR:

description
embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797936.1 True 1428 mRNA 0.46 7 8450701 8453316

Neighbor

gene id symbol gene type direction distance location
si:dkey-202e22.2 LOC104952071,LOC103375511 coding upstream 115847 8329315 ~ 8334854 (+)
arpc4l arpc4,LOC103358720 coding upstream 214052 8233082 ~ 8236649 (+)
LOC120557172 rbm38,LOC104939027,LOC101475440,LOC103365886,LOC107102025,LOC107384941 coding upstream 237863 8202280 ~ 8212838 (+)
rae1 rae1 coding upstream 250014 8191703 ~ 8200687 (+)
LOC120556871 NA coding upstream 273653 8170682 ~ 8177048 (+)
rpn1 rpn1,LOC107091506 coding downstream 13284 8466600 ~ 8474022 (+)
gata2a LOC103359878,LOC102204047,LOC100705840,LOC101487525,LOC102779036 coding downstream 29874 8483190 ~ 8496659 (+)
trnae-cuc_4 NA coding downstream 163682 8616998 ~ 8617069 (+)
trnae-cuc_5 NA coding downstream 188714 8642030 ~ 8642101 (+)
trnae-cuc_6 NA coding downstream 257693 8711009 ~ 8711080 (+)
G36836 NA non-coding upstream 5110 8445392 ~ 8445591 (+)
G36827 LOC100705312,LOC102203484,LOC101465335,LOC104933013 non-coding upstream 25170 8422173 ~ 8425531 (+)
G36826 LOC100705312 non-coding upstream 31120 8418304 ~ 8419581 (+)
G36820 NA non-coding upstream 43008 8405244 ~ 8407693 (+)
G36754 NA non-coding upstream 206255 8239463 ~ 8244446 (+)
G36887 LOC101487045 non-coding downstream 157045 8610361 ~ 8611088 (+)
G36890 NA non-coding downstream 158980 8612296 ~ 8612987 (+)
G36900 NA non-coding downstream 171405 8624721 ~ 8660277 (+)
LOC120558080 NA non-coding downstream 432457 8885773 ~ 8940038 (+)
G36988 NA non-coding downstream 586147 9039463 ~ 9039769 (+)
G36744 NA other upstream 221981 8227762 ~ 8228720 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 1144358 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 1178333 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 1263487 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 1812178 6635280 ~ 6638523 (+)
prickle2b prickle2 other downstream 1306917 9760233 ~ 9856656 (+)
G37197 NA other downstream 1851871 10305187 ~ 10309996 (+)
glrx glrx other downstream 1934592 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 2543914 10997230 ~ 11012909 (+)
G37525 evc2 other downstream 2898762 11352078 ~ 11352387 (+)

Expression


Co-expression Network