rbp7b (rbp7,LOC104956357,LOC103362661)


Basic Information

Item Value
gene id rbp7b
gene name rbp7,LOC104956357,LOC103362661
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 19849826 ~ 19851529 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797979.1
CATTAATTCCTGGTGCTGTTGAGTCTTCCAGAGAGTCACACAAACATCTAAAGATGCCTGTCAACTACAGCGGGACATGGGACATTGTCAGCAATGTCAATTTTGAGGGATACATGGTCTCACTTGGCATTGATTTTGCAACACGCAAGATTGCCTCGATGTTGAAGCCTCAGAAAGTGATTAAGCAAGATGGAGACAGTTTCACAATCAGGACATTCACTACTTTCAGAAATTACGAGTGTTCATTCAAAATTGGAGAAGAGGTCACAGAAGTGACTAAAGGGATGGACAACAGGTCATGCCAGACTGTGGTGAACTGGGAAAATGATAAGCTGGTGTGTGTTCAGAAAGGAGAAAAGAAGAACCGAGGGTGGACTCACTGGATTCAGGGAGACGAGCTTCATCTGGAACTTACTTGTGAGGATCAAGTCTGCAAGCAAGTTTATAAAAGGACTCTGTGATctagttttttttctattttgtgtttattttgatCTTTCACTTCAGTACAATCACAACATGGTATATTTCCAGTTGACATAGCGCTCATTACAATCACAAAATGTTTTAACAAATGCAAGTATGAACAATTACTTGATGTGTTTTAAGTATAACTTGTACTCTAGATTTGTTTGATTGTTTCaaaatttaatttcttttcctcttttgtgatcttgtttttttaaaaccatgTCAGACTTCAGAGAAATGCATTCACAGTATTGAATGAAAATGAGTTGGCATAAGCCACACAATGTCTCATATGCTTTATAAAGAGCATGTCATTTGAGTGTAATAGACTAGGAGTCTGATCaaatcatagactgttaatttTAATATCTACAGTCAATGGATTAAATTCTTAAACATTACAGTACCTCCTCCGGGCCACAAGGTGGTTCTGTATATTAAACATGCACTTAAACTCA

Function

symbol description
rbp7 Predicted to enable retinoid binding activity. Predicted to be located in cytoplasm.

NR:

description
PREDICTED: retinoid-binding protein 7-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797979.1 True 929 mRNA 0.37 4 19849826 19851529

Neighbor

gene id symbol gene type direction distance location
h6pd h6pd coding upstream 2472 19839164 ~ 19847354 (+)
si:ch73-15b2.5 NA coding upstream 39962 19805357 ~ 19809864 (+)
ddi2 ddi2,LOC103362592 coding upstream 45669 19795354 ~ 19804157 (+)
gnat1 gnat1,LOC101158659,LOC103133111,LOC107385205,LOC101468562,LOC102214189,LOC100706288,LOC106516079,LOC102793896 coding upstream 102983 19742912 ~ 19746843 (+)
LOC120557345 LOC103360435,LOC104965612 coding upstream 233389 19601978 ~ 19616437 (+)
si:ch211-161c3.5 calml6,c5h3orf18,clg5h3orf18,LOC104956351 coding downstream 25893 19877422 ~ 19888732 (+)
hemk1 hemk1 coding downstream 309840 20161369 ~ 20167791 (+)
glyctk glyctk coding downstream 336126 20187655 ~ 20195749 (+)
mon1bb NA coding downstream 346460 20197989 ~ 20203853 (+)
si:dkey-183j2.10 LOC104951540,LOC103362943 coding downstream 367037 20218566 ~ 20224017 (+)
G40284 NA non-coding upstream 87328 19761173 ~ 19762498 (+)
G40182 NA non-coding upstream 474987 19374630 ~ 19374839 (+)
G40139 NA non-coding upstream 601480 19245773 ~ 19248346 (+)
G40109 NA non-coding upstream 670889 19173149 ~ 19178937 (+)
G40104 LOC102787023,LOC103360233,LOC102206431,LOC101476705 non-coding upstream 680435 19168836 ~ 19169391 (+)
G40339 NA non-coding downstream 216749 20068278 ~ 20121870 (+)
G40352 NA non-coding downstream 295206 20146735 ~ 20146983 (+)
G40357 NA non-coding downstream 305325 20156854 ~ 20157525 (+)
G40433 NA non-coding downstream 375808 20227337 ~ 20227816 (+)
G40442 NA non-coding downstream 414311 20265840 ~ 20266366 (+)
sema3fa LOC103360486,LOC102793610,LOC100701195,LOC102213718,LOC102288772,LOC101468868 other upstream 108437 19687671 ~ 19741389 (+)
LOC120557344 LOC104966310 other upstream 217307 19617181 ~ 19632519 (+)
slc38a3b LOC103360384 other upstream 378828 19442008 ~ 19470998 (+)
brk1 brk1,BRK1,LOC106565571 other upstream 423370 19424866 ~ 19426456 (+)
G40164 LOC103360294,LOC104965627,LOC100702547 other upstream 523201 19324829 ~ 19326625 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other downstream 19 19851548 ~ 19859341 (+)
abhd14b abhd14b other downstream 66360 19917889 ~ 19923549 (+)
G40353 rassf1,LOC102778369 other downstream 296575 20148104 ~ 20148690 (+)
vgll4b vgll4 other downstream 1443573 21295102 ~ 21343711 (+)
itga7 itga7 other downstream 2098847 21950376 ~ 21992611 (+)

Expression


Co-expression Network