arpc4 (arpc4,LOC103358720,LOC100696600,LOC103385929,LOC107721188)


Basic Information

Item Value
gene id arpc4
gene name arpc4,LOC103358720,LOC100696600,LOC103385929,LOC107721188
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16161960 ~ 16167138 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798001.1
CTCGAAATAGGAAGCAGAGTTAGTTCCGTTATGTTCACGGAAAAGGAGAATGCGGAAAAGCCCTCATaagtgtaacgttaacgttagctacttccGCCTTTAGCCGCCTCTCATCACACAGAGAAATGACGGCAACCCTGCGCCCATATCTCAATGCAGTTCGTGCGACCCTGCAGGCCGCCCTCTGCCTGGAGAATTTCTCCTCGCAAGTGGTGGAGAGACACAACAAGCCAGAGGTGGAAGTACGGAGTAGTAAAGAGTTGCTTCTTCAGCCTGTGATCATCAGCCGTAACGACAAGGAGAAAGTTCTGATTGAGGGCTCCATCAACTCTGTCCGAGTCAGCATCGCTGTCAAGCAGgcagatGAGATTGAGAAGATTCTGTGCCATAAGTTCATGCGTTTCATGATGATGAGAGCAGAGAACTTCTTCATCCTGAGGAGGAAACCAGTGGAGGGCTATGACATCAGTTTTCTCATCACCAACTTTCACACAGAGCAGATGTACAAACATAAACTGGTGGACTATGTCATTCATTTCATGGAGGAAATTGACAAGGAGATCAGTGAAATGAAGCTGTCGGTCAACGCCAGGGCTCGTATTGTTGCAgaggagttcctcaaaaatTTCTGAAAGAGAGGAAAACCTGGAAATACATTCCTTTCACCAATCTTGGCCGTCACTGTGGAGCTTTCACATCACAGAGCTGAGAGGAGACAAAATCTGATTAGCCAAGACAAGTTGAGAAACATAAGACGTACAATAAAGATGTACAGGCCAATGGA

Function

symbol description
arpc4 Predicted to enable actin binding activity. Predicted to act upstream of or within Arp2/3 complex-mediated actin nucleation and actin filament polymerization. Predicted to be located in actin cytoskeleton; cell projection; and cytoplasm. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC4 (actin related protein 2/3 complex subunit 4).

NR:

description
Actin-related protein 2/3 complex subunit 4

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05755 ARPC4; actin related protein 2/3 complex, subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798001.1 True 784 mRNA 0.47 6 16161960 16167138

Neighbor

gene id symbol gene type direction distance location
mustn1a mustn1 coding upstream 120747 16039813 ~ 16041213 (+)
rft1 rft1 coding upstream 122686 16035974 ~ 16039274 (+)
prkcda prkcd,LOC104933455 coding upstream 126998 16016979 ~ 16034962 (+)
LOC120558102 LOC104943766 coding upstream 150454 15991734 ~ 16011506 (+)
tatdn2 NA coding upstream 201680 15948449 ~ 15960280 (+)
emc3 emc3,LOC101173295,LOC101079695 coding downstream 395727 16562865 ~ 16566395 (+)
usp4 usp4,LOC102796025 coding downstream 399563 16566701 ~ 16578215 (+)
fancd2 fancd2 coding downstream 417274 16584412 ~ 16605415 (+)
tex264a tex264,LOC102797020 coding downstream 439313 16606451 ~ 16681516 (+)
grm2a LOC103368479 coding downstream 516670 16683808 ~ 16716227 (+)
G38966 NA non-coding upstream 176864 15984624 ~ 15985096 (+)
LOC120557201 NA non-coding upstream 240338 15919385 ~ 15921622 (+)
G38948 NA non-coding upstream 247059 15914539 ~ 15914901 (+)
G38885 LOC104942130 non-coding upstream 399645 15760792 ~ 15762315 (+)
G38860 NA non-coding upstream 432560 15727979 ~ 15729400 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding downstream 28241 16195379 ~ 16195784 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding downstream 67876 16235014 ~ 16251725 (+)
G39113 NA non-coding downstream 336300 16503438 ~ 16510185 (+)
G39134 NA non-coding downstream 385546 16552684 ~ 16556205 (+)
G39143 NA non-coding downstream 411947 16579085 ~ 16579722 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 3598 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 101630 16049678 ~ 16060330 (+)
ccdc174 ccdc174 other upstream 187723 15965402 ~ 15974237 (+)
crbn crbn,LOC102793823 other upstream 224863 15923321 ~ 15937097 (+)
G38834 NA other upstream 514109 15645511 ~ 15647851 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 266100 16433238 ~ 16435229 (+)
G39116 NA other downstream 350398 16517536 ~ 16543580 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 797479 16964617 ~ 17046696 (+)
G39351 NA other downstream 944975 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 1026013 17193151 ~ 17198217 (+)

Expression


Co-expression Network