nop56 (nop56)


Basic Information

Item Value
gene id nop56
gene name nop56
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10491316 ~ 10497248 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798047.1
tacttcaaTATTGGAGAGTGGCTTTCTGCTCTGTATGCAGCAGGTGGAggtcatggatgtataataacgGTGGAGCGTGGTTAAGCTTCTCCGTCGGGTCTCGCGGTGGTAGGCCGATATCGCGGTATTTGGGTCATGTGGCAATTTGCTGAAACGTATGATACAGCCGTCTTTTAGCCGAGGCGACCGAGCAGAGTAGACGCGTAGAGCGTGCTGCTGCAGAGATTTACTAATCATGGTGCTGTTGCACGTGTTGTTCGAGCATGCTGCGGGCTATGCGCTGTTTGCAGTCAAAGAAGTGGAGGAGATCGGCATGCTGCTACCTCAGGTGGAGGAGAGCGTGCTGAGCATTGGAAAGTTCAACAGCATGGTGAGCTTGGCTGCCTTCTTCCCCTTCAAGTCGGCCCAGGCTGCTCTGGACAACATTAATGCCGTTTCTGAAGGTGTGGTTCATGCTGACCTGAAGTTGTTCCTAGAGACAAACCTGCCCCTCTCTGGGAAGAAGAAAGCTGTGTTGGGGGTTTCGGATGCCAAGATCGGAGCAGCTTTACAGGAAGAATTTAGTATTTCCATCCAGACTGGAGGGGTGGTGGCAGAGATAGCCAGAGGTGTGCGTCTGCACTTCCACTCTCTAGTAAAGGGTCTGACTGCGCTGGCTGCCTCCAAAGCACAACTGGGTCTTGGTCACAGCTACTCCAGAGCTAAAGTGAAGTTCAACGTCAACAGGGTCGACAACATGATCATACAGTCAATTGCTCTGTTGGATCAGCTAGACAAAGACATCAACACTTTCTCCATGCGTGTCCGTGAATGGTATGGCTACCACTTTCCAGAGCTGATTAAGATCGTGCCAGACAACTCTACATACTGCCGCATGGCTCAGCTCATCGGAAACAGGAAGGAGTTGTCAGAGGAGAGTCTGGAGAGTCTAGAGGAGGTGGTGATGGACGCCGCCAAGGCTCAGGCCATCCTGGATGCATCCCGTTCCTCCATGGGTATGGACATCTCTCCTATTGACCTGATCAACATAGAGAGATTCTCCAATCGTGTAGTGTCTCTGGCTGCCTATCGACTGGAGCTGCAGGAGTACCTGCGCTCCAAGATGAGCCAAGTTGCTCCAAATCTAGCAGCCTTAATTGGAGAAGTGgTGGGTGCTCGTCTGATCTCCCATGCTGGCAGTCTAACCAACCTTGCAAAGTACCCAGCCTCCACCGTCCAGATTTTGGGAGCAGAGAAGGCCCTGTTCAGAGCCCTAAAGACTCGTGGCAACACCCCCAAGTATGGGCTCATCTTCCACTCTACCTTCATTGGACGTGCCGCTGCCAAGAACAAGGGCCGGATCTCCAGATATCTGGCAAATAAGTGCACCATCGCCTCACGCATTGACTGTTTCTCTGAGGTACCCACAAGTGTGTATGGTGACAAGCTGCGTGGACAGGTGGAGGAGCGCTTGTCTTTCTATGAGACGGGCGACGTGCCACGGAAGAATGTGGACGTCATGAAGGAGGCTGTAAAAGAGGCTACTGATGTTGCCACTGAGATCAAGAGGAAACTggagaagaaggaaaagaaacgCAGGAAGCGTGAGAAGAAGTTGCAAGAAGAAACCGGTGAAACCAACGGAGAAGTGGAGGCAGAGAATGaagtgaagaaaaagaagaaacaagcGGCCGAGGTCATTGAGGTCGCAGCAGAGAGCCCTGCTGCAGAGAACGGAGCAGAGGACTCCTCTgccaagaagaaaaagaaacgaAAAGCTGAGGTAGAAATTCAGGCAGAGGAAGCCGCTGCTACAGATAACGGAGCGGAGGAAACGGATACTCCTgccaagaagaaaaagaaacgaAAGACTGAGACTAAGGATGCAGAGCCTGCAGAAGAGACTCCAGAAACTCCTGTgtctgaaaagaaaaagaagaaaaagaaaaaagagacctAGAGAATGTGGCCAAAGACTGAATCTTTATAATTGTgtacagtttcttttttttaactctttaatTTGAAGCTTGTTTATGTAAGCAGCTATATGTTGTACTGTCTTTTATGGCAACCTTAAAGCAGATTAGACTGCAAATAAATGCTTAACTGTGCCTCAACCAGTGACCTTTACTTGTACTTCTGTAAATAACTACATTAAattttttgacaagaaaaa

Function

symbol description
nop56 Predicted to enable snoRNA binding activity. Acts upstream of or within heart development. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex and small-subunit processome. Is expressed in midbrain. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 36. Orthologous to human NOP56 (NOP56 ribonucleoprotein).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K14564 NOP56; nucleolar protein 56

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798047.1 True 2158 mRNA 0.49 12 10491316 10497248

Neighbor

gene id symbol gene type direction distance location
ube2r2 ube2r2 coding downstream 49247 10434200 ~ 10442069 (-)
rfesd rfesd coding downstream 66529 10421844 ~ 10424787 (-)
cast NA coding downstream 157933 10294535 ~ 10333383 (-)
wdr1 wdr1,LOC102791765 coding downstream 275184 10204986 ~ 10216132 (-)
slc2a9l2 slc2a9 coding downstream 289565 10101729 ~ 10201751 (-)
zgc:64106 LOC104941154,LOC108239814,LOC103386237,LOC103356394 coding upstream 4418 10501666 ~ 10520703 (-)
celf4 celf4 coding upstream 56778 10554026 ~ 10639135 (-)
myorg kiaa1161,LOC103376128 coding upstream 415409 10912657 ~ 10918992 (-)
LOC120557901 NA coding upstream 421778 10919026 ~ 10921854 (-)
zgc:109965 LOC103376131,LOC101485603 coding upstream 425145 10922393 ~ 10928985 (-)
G37321 NA non-coding downstream 1264 10488800 ~ 10490052 (-)
G37305 dcaf12,LOC102784774 non-coding downstream 34896 10453961 ~ 10456420 (-)
G37276 NA non-coding downstream 180162 10310109 ~ 10311154 (-)
G37245 NA non-coding downstream 188805 10293098 ~ 10302511 (-)
G37258 NA non-coding downstream 220905 10257259 ~ 10270411 (-)
G37361 NA non-coding upstream 55045 10552293 ~ 10553381 (-)
G37364 NA non-coding upstream 163538 10660786 ~ 10661268 (-)
G37418 NA non-coding upstream 469309 10966557 ~ 10974888 (-)
G37424 NA non-coding upstream 527887 11025135 ~ 11147436 (-)
G37482 NA non-coding upstream 650665 11147913 ~ 11154364 (-)
rhobtb3 glrx,rhobtb3,LOC102786935 other downstream 71410 10387917 ~ 10419906 (-)
LOC120556768 LOC104965754,LOC103359409,LOC102210396,LOC101479743,LOC102082439,LOC102300053 other downstream 485143 9998996 ~ 10006173 (-)
G37045 lrig1 other downstream 1095746 9394739 ~ 9395570 (-)
LOC120558079 fam19a1,LOC101482978,LOC107385433,LOC108244096,LOC103386186,LOC106518519,LOC101163164,LOC102209545 other downstream 1457649 8906439 ~ 9033667 (-)
mustn1b mustn1,LOC107385427 other downstream 1868494 8619087 ~ 8622822 (-)
tpgs2 tpgs2 other upstream 35278 10532526 ~ 10536353 (-)
fam219aa fam219a,LOC101484940,LOC100701621 other upstream 434987 10932235 ~ 10943639 (-)
LOC120557925 tmem233 other upstream 485822 10983070 ~ 10988818 (-)
G37432 LOC106915059,LOC106958204,LOC102221633,LOC103464975,LOC100700174,LOC101482873,LOC102210230 other upstream 554051 11051299 ~ 11053085 (-)
LOC120557334 cytl1 other upstream 843510 11340758 ~ 11343153 (-)

Expression


Co-expression Network