zgc:64106 (LOC104941154,LOC108239814,LOC103386237,LOC103356394)


Basic Information

Item Value
gene id zgc:64106
gene name LOC104941154,LOC108239814,LOC103386237,LOC103356394
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10501666 ~ 10520703 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798048.1
CTTTGCGTAGAATTTAGACGCAGGCATATAGCCTACTGGCCAGCTCCTCCCgggtttcttttttatttcttgctgACAGACGCTCAACTCAGGCTGCGCAATGGGTTGGCTGGATATACTTTGGAACCCGGTCTGGGCAATTTCCACGGCGCTGCTGGCGCTCGTTGTGCGCATGCAGCGCCGAGGACGCTGGGATCCAAATGCCTGCACCGTTCGGCTGAAAGGGAAGACTGCTATAGTGACAGGAGCCAATACAGGAATTGGGAAGTCAATTGCCTTGGACTTTGCACGCCGTGGGGCCCGTGTTATCCTGGCCTGTCGAAGCGAGGCCCGGGGGACAGCAGCACTTAAAGAAATCAGGGAGAAAACAGGAAACCGTGACATCCACTTGCGTCTGGTGGATCTGTCTTCTCTGGACTCTGTCAGGGAATTTACTAAGAGGATTCTTGAAGAGGAGAAAGCTCTCCACATCCTTGTCAACAATGCTGGAATATCAGGTTTACCCAGGCAGATAACCAAAGATGGCTTTGACGTTTCTTTTGCCACCAACCACCTGGGACCATTTCTTCTCACCAACCTGTTGCTGGACCTGATGCAGCGTTCAGCTCCAGCGCGTATTGTCACCCTCTCCTCTGTCAACCATGTGAAGGGTCAAGTGGACTTCTCTCATTTTCATGGCGAGAACCTGACTTACCACAGGGATAATGTCTACAACCACACAAAGCTGCACAATATCATCTGTACCAACGAGCTAGCACGCAGGCTAGAAGGCACAGGTGTCACTGCAAACTCTGTCCACCCTGGTGTTGTTATGACAGATGTAATGAGACACTACCCATTCATGTTTCGTTTTCTTTTCAACTGTATTGGAATATTCTTTTTCAAGTCTCCAGATGAGGGTGCATTCAGCCCAACCTTCTGCGCAGTATCAGAGGAAATGGAGGGGATAACTGGGAAGTATTGCGACAGCGACTGCTCCCTGGTTCTCCCCGCCCCTTTAGCTCGAGACGCTGCCCTCGCGGTCAAGGACTTTGAGATCTGTATGAGGCTGACATCAAAGCTCTGAAACAAAGCTATCAGGCAAAGGGGCTTGATAACAGAAAAGTGGTCAAATTCCACCCTCTTACCGCAATTTTTGAGTGAACAATTCTGACATAATGTGTCTTTAAAAATCATCAAGTGAAGTTACTGAattcattttttataattaatttgAAGGGATATGAACTGACATGTTTTTAAGAGAAGCACAAATGAATCATGTTATATATTTGTAAATGGCAAAGCTTTGTCACTTGCACATGTGTGAATAACAGGCCAAATATGTTTAATCACTTACTTTTCATATCAGCTATCATATAGTCTGAGTAATTCtcattcatgaaaataaatatgtaaactatatatgtatattaatgTTTTCACGAAAGTCGGGTATGTGAATGAGTGAAATGAAAGTTTCCTGAGACATGCTGACACCATGTGGCCAAATATATCACAATGACAACAGAATAAGTGGCACAATCACTTCTCTTTATTTACTGATtaattaaaacacaataaaacatttgGCATTCGGTGCTTTTTGAAGAATTTGTACAGCGTTCATCACATGGTGTCCTCGGCTTCGCTACTTGgctgcagagacacagatagTGAGAGAACAGCATGGTCAAAGAGGTTTTTAGTACAGTTCTGTCAGGTCCATAAAGTCAAGAACacacatgacaaaaaaaatgatttaggaaatttttattgaataattgcatttcagctaataaattctgaataaaatgttggcggtatggctctgttcagggagtcctctgacctttcatgagcaccatgaaatagcagagagtcagaggacagcagcagcattagggaacgctcacacagtttaggactgtgtgagctgaactattcccccacatgaacagagcagcaacgaTGACATAGAAGCAAATGACACGTTATACACGACAAGGAGGAGCTGGGGAGGTGGTGGGCGGCAGAGAAGCGAGCAGCAAGCAGGTAGGAGCAAACTGAATCTGCTTTAAATAGGGCGTCCTGTTTGAGTGTAGCCATTGAGCAGCGAGGGGTGTTGACCAGCTGATGCGCTAAtccagatcagctgatgagaccGTGTTGATGGCCAATAGCATTAGCAGCGTCTTGACTAcctggcctgccagaactgacgctgACGCTCAATTACTTGTACAAATAAGTGTTTGTCTTCTAATCCTCTttggataataaaagaagatACAAGACCA

Function

NR:

description
PREDICTED: retinol dehydrogenase 12-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798048.1 True 2279 mRNA 0.45 6 10501666 10520703

Neighbor

gene id symbol gene type direction distance location
nop56 nop56 coding downstream 4418 10491316 ~ 10497248 (-)
LOC120558250 NA coding downstream 7344 10494203 ~ 10494322 (-)
LOC120558246 NA coding downstream 9309 10492290 ~ 10492357 (-)
ube2r2 ube2r2 coding downstream 59597 10434200 ~ 10442069 (-)
rfesd rfesd coding downstream 76879 10421844 ~ 10424787 (-)
celf4 celf4 coding upstream 33323 10554026 ~ 10639135 (-)
myorg kiaa1161,LOC103376128 coding upstream 391954 10912657 ~ 10918992 (-)
LOC120557901 NA coding upstream 398323 10919026 ~ 10921854 (-)
zgc:109965 LOC103376131,LOC101485603 coding upstream 401690 10922393 ~ 10928985 (-)
LOC120557231 LOC102299939,LOC100700987,LOC103139561,LOC102208776,LOC104921056 coding upstream 469756 10990459 ~ 11014552 (-)
G37321 NA non-coding downstream 11614 10488800 ~ 10490052 (-)
G37305 dcaf12,LOC102784774 non-coding downstream 45246 10453961 ~ 10456420 (-)
G37276 NA non-coding downstream 190512 10310109 ~ 10311154 (-)
G37245 NA non-coding downstream 199155 10293098 ~ 10302511 (-)
G37258 NA non-coding downstream 231255 10257259 ~ 10270411 (-)
G37361 NA non-coding upstream 31590 10552293 ~ 10553381 (-)
G37364 NA non-coding upstream 140083 10660786 ~ 10661268 (-)
G37418 NA non-coding upstream 445854 10966557 ~ 10974888 (-)
G37424 NA non-coding upstream 504432 11025135 ~ 11147436 (-)
G37482 NA non-coding upstream 627210 11147913 ~ 11154364 (-)
rhobtb3 glrx,rhobtb3,LOC102786935 other downstream 81760 10387917 ~ 10419906 (-)
LOC120556768 LOC104965754,LOC103359409,LOC102210396,LOC101479743,LOC102082439,LOC102300053 other downstream 495493 9998996 ~ 10006173 (-)
G37045 lrig1 other downstream 1106096 9394739 ~ 9395570 (-)
LOC120558079 fam19a1,LOC101482978,LOC107385433,LOC108244096,LOC103386186,LOC106518519,LOC101163164,LOC102209545 other downstream 1467999 8906439 ~ 9033667 (-)
mustn1b mustn1,LOC107385427 other downstream 1878844 8619087 ~ 8622822 (-)
tpgs2 tpgs2 other upstream 11823 10532526 ~ 10536353 (-)
fam219aa fam219a,LOC101484940,LOC100701621 other upstream 411532 10932235 ~ 10943639 (-)
LOC120557925 tmem233 other upstream 462367 10983070 ~ 10988818 (-)
G37432 LOC106915059,LOC106958204,LOC102221633,LOC103464975,LOC100700174,LOC101482873,LOC102210230 other upstream 530596 11051299 ~ 11053085 (-)
LOC120557334 cytl1 other upstream 820055 11340758 ~ 11343153 (-)

Expression


Co-expression Network