smarcd1 (smarcd1)


Basic Information

Item Value
gene id smarcd1
gene name smarcd1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24827806 ~ 24858457 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798069.1
AACTCTGTTCTCGCTCTCGCGGTAACTCCGTCCCTCCACTGGCGGCGACATTCGGAGAGGAGATGGCGGCCAGAGGGGGGTTTCAGTCGGCACCGACgggaggtggtggtggagcAATGGGACCTGGACCACCGGTACCGGGCGCAGGACCAGGCATGGGCCCCGGGACTCCTTCTGGAAGGATGGTACCGTCGTCGGCCGCGCAGAACCACATGTACCGCTCCCCGATGCCCGGGCCCGGGTACCCGAGACCAGGCATGCCTCCATCCAGCCGCATGACTCCACAAGGACCAGCCATGGGCCCCCCAGGATATGGCAACAGCCCAGTGTCGCGCCCTGTGATGCCTGGCGTGATGGATCCGTCTCGCAAGAGGCCCGCCCCCCAACAGATCCAGCAGGTTCAGCAGCAGAACCGCAACCAGCAcacaaagaagaagaagatggctGATAAAATTCTACCTCAGAGGATCAGGGAACTGGTCCCAGAGTCTCAAGCTTACATGGATCTGCTGGCTTTTGAGAGGAAGCTGGATCAGACCATCATGCGCAAGAGGCTGGACATTCAGGAGGCCCTCAAGAGGCCCATTAAGcaAAAGAGAAAGCTTCGGATCTTTATATCAAACACCTTCAACCCCGCAAAGCCAGATGCTGAGGATGGAGAAGGCACAGTTGCATCATGGGAGCTACGTGTTGAGGGACGTCTGCTGGAAGATACGGCTGTGTCAAAGTATGAAGCCACCAAACAGAAGAGGAAGTTCTCCTCTTTCTTCAAGTCTCTGGTGATTGAGTTGGACAAAGACCTGTATGGTCCAGATAATCACCTTGTGGAAtgGCACAGGACTGCCACCACCCAGGAAACTGATGGTTTTCAGGTAAAGAGGCCTGGTGATGTGGGTGTTCGCTGCACCGTCCTGCTCATGCTCGACTACCAGCCCCCTCAGTTCAAGCTGGACCCCCGGCTGGCTCGTATGCTGGGTATCCACACCCAGACTAGACCGGTCATCATTCAGGCCCTGTGGCAGTACGTCAAGACCCACAAACTCCAAGACCCTCACGAGCGGGAGTTCATCAACTGTGACAAATACCTGCAGCAGATCTTTGAAACTCAGCGGATGAAGTTCTCCGAGATCCCACAGCGCTTGCATGCTCTCCTGATGCCCCCTGAACCAATCATCATCAACCATGTGATCAGTGTGGACCCTAATGACCAAAAGAAGACTGCTTGTTATGACATTGACGTGGAGGTGGATGACACGCTAAAGACTCAGATGAACTCTTTCCTGCTCTCCACAGCCAGTCAGCAGGAAATAGCAGGACTGGACAACAAGATCCATGAAACCATTGAGACCATTAACCAGCTGAAGACCCAGAGAGAGTTCATGTTGAGTTTTGCCAGAGATCCTCAGGGCTTTATCAATGACTGGCTGCAGTCCCAGTGCAGAGACCTCAAGACCATGACAGATGTGGTAGGAAACCCAGAAGAAGAGCGAAGAGCAGAGTTTTACTACCAGCCGTGGGCTCAGGAGGCGGTCTGCCGCTACTTCTACTCCAAGGTCCAGCAGAGGCGACAGGAGCTGGAGACGGCGCTCGGCATCAGGAACACCTAAAGAAAAGCATCCACAGGCAGCAAATACGGAGACATGCTGTGCTGTCAGGAGACGACTAATGTTTGAGAGTGTGGCACGTTCAAAATGAATTCCTCCCAGAGTTGTCTGACAAACTTAGAGAGACATAGATACTAGATGGCTTTACTGTTTATATATAGGATgtcccttttttgttttattttaacccTGCAGCTTGACTACTGTTGCAGTTTGGTTGCTACTTTCAAAgtatattttgtttattctCCTCACACCAGAGCTCTCTGAGCACAATGTATTTTTGCTTGCATGTCTAAGCCTTACATGGAAGCATTCCTTTCATTTTGGTACATGTGCCCGTACAAAAGTACAGATTGTACACAAATAAGAAAGCAGAGGGCAGcttttaatgtattttgtcCCTGAATATAAAATATCTAAAATCAGCTGGAATGTGATGAGTAACTTGTAGAAGCTGGATCTTCCTGTCTGGGTTGTATCAGAAGCGGCAGTATTTTTCAAAGCTTCGGCTTGGGTTCGTCGTCTCATCGTGGGCAGGGTGGATGTCGCCGCCTTAAACCCACCAGGAAGTGCCGagggtaactttttttttttttttttttttctcaacaatTGGGATGCAGCTTTCGGGGAGGCAAAAGACATTTAGAAGCTGGTTGCCTCAagaatgtttttctttgttcccCTTTTTGGAAAgtaaatttacattttacactcCCAACCCAGCCCCTGGATCCTTGCCGAGTAAGTTGGATATTAATTGTGATTGTGTTTGTAATCATCAGGCTACTTTGCTGCACATTGGCTGTTCATGTGTCACTTTGTCTTAAGCTCTCATTGGTTTGTTTTGACGGTTTGTGCCTCAATCTGGTGTACGAGAACAGTCTAAAAGCTCAATCATGGCAGAATATACATCTTTTTAAGGATGCCATTAGTAtgaagttttcttttcttttttttttcaatgattcttgtttttaaaatgtgtattaaATCAGTACTTGTCTTGTTAGCTAGTACGGATTATCAAGGAAGTAGCTAGTATGAGTACCTCTAGTCTATATAGTTTTGTAAATActgagcaggaaaaaaaaaactgaagatgGATGTGAAGTAAAATTGTATCTCTTATCCCTTACAGATGTTTTTCTTAACTCTTTGTCTACGCTCAGATAGTTGAACcagtatttatattattaatcagCCCTCGCTGTCAGAGCACAATGATTTGGCTCTCCTCAACATAAAGATGCCAGTCGCATTTGGAGAATCACTGCTGCGCTGGACGAAATGTACACAGCATTCATGTCTGCAAGCTGGGAAAGTTAAATTTTCTGCTTTTTAGTTTAGTGTATTTTTAATTCTGTACAGAGAAGCCATAAACAAGATTTAAAGAGCCGTAGCTTCTTACACTGAAGTCCTGACACCTTGTTGAGTTTAATGGTTGTTTCCCTGTTGAAGGTGGAGATGAGTGTCCTGGCTGAAACTTAAGCGTGTGTGCATTTAATTAACAAATTCCAAGAATACACTAATGTGGGTTTGGGCAGGTACATGATTTGAAACGAGTGGTGGGAACCTCTGGGTCGTAAAACACAATACTGACTATTTGAATCTGCAGACTTTTTCATGGACCAAACCTATTTTTCTGTATGTTATGTTAATAAAGGATATGTAAAATATAA

Function

symbol description
smarcd1 Predicted to enable transcription coregulator activity. Acts upstream of or within hemopoiesis; somite development; and spinal cord development. Predicted to be part of SWI/SNF complex. Predicted to be active in nucleus. Is expressed in ventricular zone. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome. Orthologous to human SMARCD1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1).

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

GO: NA

KEGG:

id description
K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798069.1 True 3289 mRNA 0.47 13 24827806 24858457

Neighbor

gene id symbol gene type direction distance location
asic1b asic1,LOC104953473,LOC102798299 coding upstream 5493 24623492 ~ 24822313 (+)
gls2b LOC103355460,LOC104964278 coding upstream 244659 24568491 ~ 24583147 (+)
rdh5 rdh5,LOC104964277 coding upstream 260384 24561705 ~ 24567422 (+)
eya2 eya2,LOC103355465,LOC102207428 coding upstream 306498 24490859 ~ 24521308 (+)
gcnt7 gcnt7,LOC102795321,LOC102207891 coding upstream 378437 24441312 ~ 24449369 (+)
LOC120557580 gpd1,LOC102799081 coding downstream 804 24859261 ~ 24864094 (+)
cers5 cers5 coding downstream 7717 24866174 ~ 24886029 (+)
LOC120556805 bcdin3d,LOC102799648 coding downstream 30150 24888607 ~ 24891414 (+)
rab22a rab22a coding downstream 50627 24909084 ~ 24921376 (+)
LOC120557917 vapb,LOC101078863,LOC108231687,LOC103355448 coding downstream 65382 24923839 ~ 24946743 (+)
G41375 itch,LOC104964281,LOC107681287,LOC101070007,LOC108231686,LOC103355463 non-coding upstream 285653 24540909 ~ 24542153 (+)
G41368 NA non-coding upstream 304199 24521599 ~ 24523607 (+)
LOC120557758 NA non-coding upstream 373787 24452621 ~ 24454019 (+)
G41360 NA non-coding upstream 376237 24436382 ~ 24451569 (+)
G41354 NA non-coding upstream 405923 24419201 ~ 24421883 (+)
G41441 NA non-coding downstream 63179 24921636 ~ 24921851 (+)
G41518 NA non-coding downstream 164001 25022458 ~ 25022749 (+)
LOC120557911 NA non-coding downstream 194379 25052836 ~ 25065136 (+)
G41539 NA non-coding downstream 226957 25085414 ~ 25085842 (+)
LOC120558031 NA non-coding downstream 240830 25099287 ~ 25113176 (+)
bloc1s1 bloc1s1,LOC102796612 other upstream 267488 24555525 ~ 24560318 (+)
znfx1 NA other upstream 960294 23848047 ~ 23867512 (+)
cbfa2t2 cbfa2t2 other upstream 1055874 23734948 ~ 23771932 (+)
itga7 itga7 other upstream 2835195 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 3484095 21295102 ~ 21343711 (+)
slc12a5a LOC103355988 other downstream 349699 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 823950 25682407 ~ 25690935 (+)
LOC120558082 kcna10,LOC104941363 other downstream 908635 25767092 ~ 25872919 (+)
LOC120558088 LOC104941431 other downstream 1046312 25904769 ~ 25907738 (+)
G41825 NA other downstream 1410145 26268602 ~ 26273315 (+)

Expression


Co-expression Network