ube2r2 (ube2r2)


Basic Information

Item Value
gene id ube2r2
gene name ube2r2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10434200 ~ 10442069 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798073.1
TTACGTTTGTAGACACGCGCAATGATAGCCGGAAGCACCGATCTGAGGAAAATAAAAATCGATGAAATCCACTGTATTTCGCGAGTATAAACCTCTCACTTACTGTCCTTTTCGCGACCGTAGGCTCGAATTGATCTGCCCTTTTCACCGTCACTGTGCCTGTGGCGAAGGTAGAGAGCAGGAAAGCTGCTCCATTTGAACGAAGTTGCTCGGTAGGGGTTTAGCTGACGTGTGGAGAAGTTGAGACTGCCAGAGAGCAGataaacaaacataaacaagCAGGGACCAGCTGAGCGCCTGTCCGAACCGAACCAGCGGCACGGAGAGATGTCAGGGAGAGCGAGTTTCCTCTTTCAAACCCAAGAATGATCCACAGGAGACCGTGACTTACACTGATACTAGCTCCATGTCAACTGTCAACACTGGCACACAAAGAATTTCGGAAACAAAACACGAGGACCAGCCATAGGCTTTAGCAGAAAAGCCATTGCTCCTGTCACTGTCTCTTTGTCAAGACAGGCTAGCATGGACAACCAATAAGTTTACCTTCCAGTTTTCAGCTGTGACGAAACGAATACATATTACAGTGCAAGGAGACAGAgAAGTGGGATTAACATGGCCCACCAGGCAACCCCTAGTTCCCAGAAGGCCCTGATGATGGAGCTGAAGTCTCTGCAGGAGCAGCCGGTGGAGGGCTTCCGCATCACTCTGGTGGAAGAGTCTGACCTCTACAACTGGGAAGTGGCCATCTTCGGGCCCCCTAACACCCTGTATGAGGGAGGCTACTTTAAGGCTCACATCAAGTTCCCAGTTGACTACCCTTACTCCCCACCAACCTTCCGCTTTCTCACAAAGATGTGGCACCCCAACATCTACGAGAACGGAGATGTGTGCATCTCCATCCTGCACCCTCCTGTCGATGACCCTCAGAGTGGGGAGCTGCCCTCTGAACGGTGGAACCCCACCCAGAACGTCAGGACTATCCTGCTTAGTGTGATCTCTCTGCTTAATGAGCCCAACACCTTCTCCCCGGCTAATGTGGACGCGTCTGTCATGTTTCGCAAATGGAGGGACAGCAAAGGCAAGGACAAGGAGTATGCAGAGATTATCAGGAAGCAGGTGATGTCAACAGCAGCAGAGGCTGAGCGCGATGGAGTCAAGGTGCCGACCACGTTGGCCGAGTACTGCGTCCAGACCAGGGTTCCCTCCCAGGACAGCAGTTCAGACCTTCTCTATGACGACCTGTACGACGACGACATggaagaggaggacgaggaggaagaCGAGAGCGATATGGAGTCTGTAGGTGAAGCCGGGGGGATCAGCCCCACGGAGGACGGCGGGACGTCCACCAGACGTTACGACAACCAAGACGACTCTGGCAACGAAGACTCATGATGATCTGGATGATAACTCCTCCCTGCCAACTCCCCCAACCACCCTCCTTTTATGTGTTACTTTccgattttgtgtgtgtgtctctgtatgtgtgtgtgtctctgtgtgtctgtaggtgtgtgtgtgtgtgtgcgtttgcacaTACAGTGGGGTCAACAGTCAACTGCCAAAATAAACgtttcatcatttattaaacTAATACAATGATTGGTCA
>XM_039798074.1
TTTACGTTTGTAGACACGCGCAATGATAGCCGGAAGCACCGATCTGAGGAAAATAAAAATCGATGAAATCCACTGTATTTCGCGAGTATAAACCTCTCACTTACTGTCCTTTTCGCGACCGTAGGCTCGAATTGATCTGCCCTTTTCACCGTCACTGTGCCTGTGGCGAAGGTAGAGAGCAGGAAAGCTGCTCCATTTGAACGAAGTTGCTCGGTAGGGGTTTAGCTGACGTGTGGAGAAGTTGAGACTGCCAGAGAGCAGataaacaaacataaacaagCAGGGACCAGCTGAGCGCCTGTCCGAACCGAACCAGCGGCACGGAGAGATGTCAGGGAGAGCGAGTTTCCTCTTTCAAACCCAAGAATGATCCACAGGAGACCGTGACTTACACTGATACTAGCTCCATGTCAACTGTCAACACTGGCACACAAAGAATTTCGGAAACAAAACACGAGGACCAGCCATAGGCTTTAGCAGAAAAGCCATTGCTCCTGTCACTGTCTCTTTGTCAAGACAGGCTAGCATGGACAACCAATAAGTTTACCTTCCAGTTTTCAGCTGTGACGAAACGAATACATATTACAGTGCAAGGAGACAGAgGTGTCAGAAGTGGGATTAACATGGCCCACCAGGCAACCCCTAGTTCCCAGAAGGCCCTGATGATGGAGCTGAAGTCTCTGCAGGAGCAGCCGGTGGAGGGCTTCCGCATCACTCTGGTGGAAGAGTCTGACCTCTACAACTGGGAAGTGGCCATCTTCGGGCCCCCTAACACCCTGTATGAGGGAGGCTACTTTAAGGCTCACATCAAGTTCCCAGTTGACTACCCTTACTCCCCACCAACCTTCCGCTTTCTCACAAAGATGTGGCACCCCAACATCTACGAGAACGGAGATGTGTGCATCTCCATCCTGCACCCTCCTGTCGATGACCCTCAGAGTGGGGAGCTGCCCTCTGAACGGTGGAACCCCACCCAGAACGTCAGGACTATCCTGCTTAGTGTGATCTCTCTGCTTAATGAGCCCAACACCTTCTCCCCGGCTAATGTGGACGCGTCTGTCATGTTTCGCAAATGGAGGGACAGCAAAGGCAAGGACAAGGAGTATGCAGAGATTATCAGGAAGCAGGTGATGTCAACAGCAGCAGAGGCTGAGCGCGATGGAGTCAAGGTGCCGACCACGTTGGCCGAGTACTGCGTCCAGACCAGGGTTCCCTCCCAGGACAGCAGTTCAGACCTTCTCTATGACGACCTGTACGACGACGACATggaagaggaggacgaggaggaagaCGAGAGCGATATGGAGTCTGTAGGTGAAGCCGGGGGGATCAGCCCCACGGAGGACGGCGGGACGTCCACCAGACGTTACGACAACCAAGACGACTCTGGCAACGAAGACTCATGATGATCTGGATGATAACTCCTCCCTGCCAACTCCCCCAACCACCCTCCTTTTATGTGTTACTTTccgattttgtgtgtgtgtctctgtatgtgtgtgtgtctctgtgtgtctgtaggtgtgtgtgtgtgtgtgcgtttgcacaTACAGTGGGGTCAACAGTCAACTGCCAAAATAAACgtttcatcatttattaaacTAATACAATGATTGGTCA

Function

symbol description
ube2r2 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Orthologous to human UBE2R2 (ubiquitin conjugating enzyme E2 R2).

NR:

description
ubiquitin-conjugating enzyme E2 R2-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K02207 UBE2R, UBC3, CDC34; ubiquitin-conjugating enzyme E2 R

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798073.1 False 1612 mRNA 0.51 6 10434200 10442068
XM_039798074.1 True 1620 mRNA 0.51 6 10434200 10442069

Neighbor

gene id symbol gene type direction distance location
rfesd rfesd coding downstream 9413 10421844 ~ 10424787 (-)
cast NA coding downstream 100817 10294535 ~ 10333383 (-)
wdr1 wdr1,LOC102791765 coding downstream 218068 10204986 ~ 10216132 (-)
slc2a9l2 slc2a9 coding downstream 232449 10101729 ~ 10201751 (-)
zbtb49 zbtb49 coding downstream 420481 10007330 ~ 10013719 (-)
nop56 nop56 coding upstream 49247 10491316 ~ 10497248 (-)
LOC120558246 NA coding upstream 50221 10492290 ~ 10492357 (-)
LOC120558250 NA coding upstream 52134 10494203 ~ 10494322 (-)
zgc:64106 LOC104941154,LOC108239814,LOC103386237,LOC103356394 coding upstream 59597 10501666 ~ 10520703 (-)
celf4 celf4 coding upstream 111957 10554026 ~ 10639135 (-)
G37276 NA non-coding downstream 123046 10310109 ~ 10311154 (-)
G37245 NA non-coding downstream 131689 10293098 ~ 10302511 (-)
G37258 NA non-coding downstream 163789 10257259 ~ 10270411 (-)
G37260 ptpra non-coding downstream 181647 10252158 ~ 10252553 (-)
G37165 NA non-coding downstream 373793 10059804 ~ 10060407 (-)
G37305 dcaf12,LOC102784774 non-coding upstream 11892 10453961 ~ 10456420 (-)
G37321 NA non-coding upstream 46731 10488800 ~ 10490052 (-)
G37361 NA non-coding upstream 110224 10552293 ~ 10553381 (-)
G37364 NA non-coding upstream 218717 10660786 ~ 10661268 (-)
G37418 NA non-coding upstream 524488 10966557 ~ 10974888 (-)
rhobtb3 glrx,rhobtb3,LOC102786935 other downstream 14294 10387917 ~ 10419906 (-)
LOC120556768 LOC104965754,LOC103359409,LOC102210396,LOC101479743,LOC102082439,LOC102300053 other downstream 428027 9998996 ~ 10006173 (-)
G37045 lrig1 other downstream 1038630 9394739 ~ 9395570 (-)
LOC120558079 fam19a1,LOC101482978,LOC107385433,LOC108244096,LOC103386186,LOC106518519,LOC101163164,LOC102209545 other downstream 1400533 8906439 ~ 9033667 (-)
mustn1b mustn1,LOC107385427 other downstream 1811378 8619087 ~ 8622822 (-)
tpgs2 tpgs2 other upstream 90457 10532526 ~ 10536353 (-)
fam219aa fam219a,LOC101484940,LOC100701621 other upstream 490166 10932235 ~ 10943639 (-)
LOC120557925 tmem233 other upstream 541001 10983070 ~ 10988818 (-)
G37432 LOC106915059,LOC106958204,LOC102221633,LOC103464975,LOC100700174,LOC101482873,LOC102210230 other upstream 609230 11051299 ~ 11053085 (-)
LOC120557334 cytl1 other upstream 898689 11340758 ~ 11343153 (-)

Expression


Co-expression Network