LOC120557598


Basic Information

Item Value
gene id LOC120557598
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17654623 ~ 17658625 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798099.1
attgaaaacaaatttaaatcTTTGGTTTAGTGTATAGGAGAATTTGTTTCAGCAATCAGATATTATGTTTTGATAATGTTGTGAAATTAATGTTAATAGTTGGAATAGTTAGAAAAAGCCCCCGCTTGTTTTAGAGACTACTTTTGTAAcacttttgtatttgtttgaGTGCACTTTTTAATCAAATAGTACAAATTCTCAACAATAAGTCAGGACACAAGGCATTTCTTAAAACGTGGTTCATGTTTTAAGCAGTTTTAaagtaaacaaacagaaatagcGTTAATTTATCATCTAAAGTCACCTAAGGTTTCAGCAGGCTTTGGGAAATCAGgtcacctgtaagcaatgtttaGGTCATGCTGAAAATAATATGATGCATAATACTTGTGCTCTATTGtctattttaatcatttaagttttttatgatttttttttcaaatcatgtGTGATTTGCACATAACTGAAGTGGCAGCTTGGCATTTGTGACCAAAGGTCACAGACAGATCAGACTAACTCATGCTGTGAACTTTCATGGTTTTGCCAAGTTGTGTTGTACTTTTACTGAGATAAACCATTCAGAGATGTTGTGCAAACACACTGGATTACACAGGAAAATGATTGGCCTTTATAGGCTTGAACCACAAGATTAATTATCTAGGAATCTGTGTGACTCATCCTGTCTTGACACCGAATAAGGGTCTAAGTGGGATGTAGAATAGTTATATTAAAGTAATCTCTGTAGCCAATGTCAGTCTGCTGTGCCAGGCTGTTCCTCTTGTTCTTCTTTGTCGTCCTACAGGTTTTGGGATTTGGACTTAATatcaaaagtgtcaaaatggGGCGTTCATCTTTGCTCTTCATTTTGCTAACCGTGTCTCTCTCTTCACTTGGAAGCCTCATCACTTCACATTCACTGGACAACTCTGATTCAGAACGAATAACTCGAAGCACAGGCAGAAACAACAACGCTCCAGACAGCTTGGCCAGTGAATGGATCTTCCATTCAGAGAGCAGCAGTGACTCTGTGCAGGGCCGTGGACAGAGTGTTGACAGTACAGCATCACAGATACTCATCATTCCAAAGGAGACTGAGCAAGCCAGCAATGAAAGCCGTTCTGGGTCTGGAATTCCTTTAACTAAAACACCAGCACATACTCTACACCACTCAGGTGCTCGTGACCAAGGAGCTGACAAAGCTAATACTTCAATTACAGGATACACTCACTCCAGCGTGCACATGATCTCAGAGGAAGCTGTCTTGGAAGGCAGCCACATAACGACTGAGGAACAATTAAAAGAGAGTCATACATCCATTGTAAATGATGATTTTCTGCATGGTTTGGACAGCCCTAAACTCCCTGTCCAAAACAATGCGTTAACTTCCACTCCGAACCATTACCTGTCAGGACCTGGAGGTCCCTGTGTGCTTGGTCTGAGTCCTTGTGTTGTTCTAACAAACTATAACGGCACCAATCTGCTGTGGGATGACATGAGACGCACACTGGCATTTGCCTGGGAACTACATGTCTTTGGATCAGCCAGCCTCTTCATATTGATGGCAATCCTGGCAGTTATGGGAATGGCCGGTGCATGCACTCTTCCTCATCCCCTCTGTGACACCCTGACTTTAGCAAATACTCTCCTGATCCTCTGTGGTAGTCTGCGTGGTGTCCTCCTTCTACTTGATCCTTATGGCACCCGTCAGATCCTCTCTCGTGCTACTCTGGCAGCTCTCCATAATGTTCCTCTGCAGCTCCTTCTGTGGGTGCAGGTTGCCCTCGCACTGGTCACACTCAGAGGGTTGAAATTATTACTTTTCCCGCTAAAGCTGCAGCGCCCGTGGGTGGTTGGAGTGCTGGCTGTATCACATTGCACTCCATTACTTGTAGCAGACCTTTTCTCTACAACTTTATCCCCCACTCTCCCTCTGTTGCTACATaccctctccctctgctgggGCCTCCCATTCTGCATGGGAATCCTCAAGACTTTCTCTTATCGATATCCCcttctcaggtcttttgcacgTCAGTGGGTTCCTTCACAGAGGATTGAGAAGTGTGCAAGGCGAGTAACAGTACTGTGCGCCTTCCTCGggtttctctgctgcagccttcAGACGTATAGTCTCCTCTGGCTTTATGGGCTTCTGGGGAACTGGAGGCGCTTTGGCTGGGGCTGGTGGCTTTCTCAGTTTTGGGCCAGAGTTCTTGAGTTAGCTTGGGGATTTTCATTGCTTGTCCTGGGATCCTGGATCTTCTGGACACCATCCAGGGGTCATTCAAGGGGCTATCATGGGCAGAGCAGAAGGGAGGGGCCTAAAGCGGTAGAGGAGACCCGCTTGTGGGGTAGGGTCTTGGCCAGGAAACGAAAACGGCCACTAAGAAAATCTGAGAAAACCCTGGAAGACCTGATGCCAAACAACTGGGGAAAGTATAAGCTGTCTAGAACAGGTTTCAGCACCAACTTAATGTGTCCGTGTAATGATCAACCGTCTACCATTACACAAGAATACATGCCTGATCCTGTTAGCAATAGTAGCTCTGACTTTCAGGCTACACCACTGTGGCAGACAGTTGGGGAACGCAAATGTATTCTTTCACTTATAGAATTTAACATGTGGCCTCCATCTCCAATTAACCTCAGACGCAGCATTGACAGTGCCCTTCACAATAGACAGCTTGTAACAGGAGGTCTGTTCACACTTCCACCTCCCTCTTGGACTCAAACTGTGGACGCAGACACCGCTGATGGAAATAGTGGTACAATAACATTCCCTCCAGCTTATGTTGGCTATGGGTGGACGTTGGATACAGAGTCTATTTCTGCATCTCTAGACCACTTCCAAGGTAAAGACTCAGAGCTGATACAGTCACCCAGTATTATCACTGATTATGAGGGTAGTGTtgggtctccagctgctgcACATCAGGGAGAAGAATTTAACTTAGCACTCTCAGCAGTGATGCATTAGCATTGCTGGTTTGAAGACAGTGTGACAGATGTTAAAGCTGCCTCTAATGTCAGGAGTACCACTTCTAACCTACCCTCACACATCTAGCCTTCATTAAATGGCCCAATCACATAATGTGAACAGTTATGCTCTTGCGATACGGCCTCAAGCAAAAACTGCTTTACTTGTGGTGGTCTAATAGTGACTTAATCAAGACGTCACATGTATGTTTTGAAAATACAAGGGTGTTATCTATTCATTGCGATTTGACTTCCATTGGGTCTTCTGAAATAAATGTTGTTGTTCTAGCACAACTTAATCCACAAGTACATAGTGTGGACATTTCCCCCAGTGGATATAAAGAGTATTTCAGAATTTATAGAGTTttataatgtttgtttttataatgtttGTTTTCAATCAGTAAGTGTAAAATTCCTATCATCTCAGTCACCGCTCTCCTTTTTGTACCAAATTAGTATACTAACTTCACTGGTTGAAAGTCATGTGAGCATTTGCTTGGCTCATCTTTGGTAATATGTGAAAGCTGCACTATTTACCTCTGCAGAAATAAATATGATTGGATTATTTTGTTGTGTATGAAATAAAGTGATTTTATATGAA
>XM_039798100.1
TTTTGGTTTTGCAATTGTTTTAGCAGGTGACACATCAGGATGGGAAGCTGCCAAGTAACCAGCCGGTGCAGTAATAGGAATAGGACGTCAGCTGGATGGCTGAAAGCATGCCTGTAAATCCAATGGGTTCAACCCTCACTGTGATGCTCTTTATCTTCTACATCAGAAATCACATGTTACACAAGCTTGAACTGCAGCTAGAGGTAGAGTGCTACCCATGAAGCACTTAAAGAAAGCAGAGCAAAAGGAATCACAGGTTTTGGGATTTGGACTTAATatcaaaagtgtcaaaatggGGCGTTCATCTTTGCTCTTCATTTTGCTAACCGTGTCTCTCTCTTCACTTGGAAGCCTCATCACTTCACATTCACTGGACAACTCTGATTCAGAACGAATAACTCGAAGCACAGGCAGAAACAACAACGCTCCAGACAGCTTGGCCAGTGAATGGATCTTCCATTCAGAGAGCAGCAGTGACTCTGTGCAGGGCCGTGGACAGAGTGTTGACAGTACAGCATCACAGATACTCATCATTCCAAAGGAGACTGAGCAAGCCAGCAATGAAAGCCGTTCTGGGTCTGGAATTCCTTTAACTAAAACACCAGCACATACTCTACACCACTCAGGTGCTCGTGACCAAGGAGCTGACAAAGCTAATACTTCAATTACAGGATACACTCACTCCAGCGTGCACATGATCTCAGAGGAAGCTGTCTTGGAAGGCAGCCACATAACGACTGAGGAACAATTAAAAGAGAGTCATACATCCATTGTAAATGATGATTTTCTGCATGGTTTGGACAGCCCTAAACTCCCTGTCCAAAACAATGCGTTAACTTCCACTCCGAACCATTACCTGTCAGGACCTGGAGGTCCCTGTGTGCTTGGTCTGAGTCCTTGTGTTGTTCTAACAAACTATAACGGCACCAATCTGCTGTGGGATGACATGAGACGCACACTGGCATTTGCCTGGGAACTACATGTCTTTGGATCAGCCAGCCTCTTCATATTGATGGCAATCCTGGCAGTTATGGGAATGGCCGGTGCATGCACTCTTCCTCATCCCCTCTGTGACACCCTGACTTTAGCAAATACTCTCCTGATCCTCTGTGGTAGTCTGCGTGGTGTCCTCCTTCTACTTGATCCTTATGGCACCCGTCAGATCCTCTCTCGTGCTACTCTGGCAGCTCTCCATAATGTTCCTCTGCAGCTCCTTCTGTGGGTGCAGGTTGCCCTCGCACTGGTCACACTCAGAGGGTTGAAATTATTACTTTTCCCGCTAAAGCTGCAGCGCCCGTGGGTGGTTGGAGTGCTGGCTGTATCACATTGCACTCCATTACTTGTAGCAGACCTTTTCTCTACAACTTTATCCCCCACTCTCCCTCTGTTGCTACATaccctctccctctgctgggGCCTCCCATTCTGCATGGGAATCCTCAAGACTTTCTCTTATCGATATCCCcttctcaggtcttttgcacgTCAGTGGGTTCCTTCACAGAGGATTGAGAAGTGTGCAAGGCGAGTAACAGTACTGTGCGCCTTCCTCGggtttctctgctgcagccttcAGACGTATAGTCTCCTCTGGCTTTATGGGCTTCTGGGGAACTGGAGGCGCTTTGGCTGGGGCTGGTGGCTTTCTCAGTTTTGGGCCAGAGTTCTTGAGTTAGCTTGGGGATTTTCATTGCTTGTCCTGGGATCCTGGATCTTCTGGACACCATCCAGGGGTCATTCAAGGGGCTATCATGGGCAGAGCAGAAGGGAGGGGCCTAAAGCGGTAGAGGAGACCCGCTTGTGGGGTAGGGTCTTGGCCAGGAAACGAAAACGGCCACTAAGAAAATCTGAGAAAACCCTGGAAGACCTGATGCCAAACAACTGGGGAAAGTATAAGCTGTCTAGAACAGGTTTCAGCACCAACTTAATGTGTCCGTGTAATGATCAACCGTCTACCATTACACAAGAATACATGCCTGATCCTGTTAGCAATAGTAGCTCTGACTTTCAGGCTACACCACTGTGGCAGACAGTTGGGGAACGCAAATGTATTCTTTCACTTATAGAATTTAACATGTGGCCTCCATCTCCAATTAACCTCAGACGCAGCATTGACAGTGCCCTTCACAATAGACAGCTTGTAACAGGAGGTCTGTTCACACTTCCACCTCCCTCTTGGACTCAAACTGTGGACGCAGACACCGCTGATGGAAATAGTGGTACAATAACATTCCCTCCAGCTTATGTTGGCTATGGGTGGACGTTGGATACAGAGTCTATTTCTGCATCTCTAGACCACTTCCAAGGTAAAGACTCAGAGCTGATACAGTCACCCAGTATTATCACTGATTATGAGGGTAGTGTtgggtctccagctgctgcACATCAGGGAGAAGAATTTAACTTAGCACTCTCAGCAGTGATGCATTAGCATTGCTGGTTTGAAGACAGTGTGACAGATGTTAAAGCTGCCTCTAATGTCAGGAGTACCACTTCTAACCTACCCTCACACATCTAGCCTTCATTAAATGGCCCAATCACATAATGTGAACAGTTATGCTCTTGCGATACGGCCTCAAGCAAAAACTGCTTTACTTGTGGTGGTCTAATAGTGACTTAATCAAGACGTCACATGTATGTTTTGAAAATACAAGGGTGTTATCTATTCATTGCGATTTGACTTCCATTGGGTCTTCTGAAATAAATGTTGTTGTTCTAGCACAACTTAATCCACAAGTACATAGTGTGGACATTTCCCCCAGTGGATATAAAGAGTATTTCAGAATTTATAGAGTTttataatgtttgtttttataatgtttGTTTTCAATCAGTAAGTGTAAAATTCCTATCATCTCAGTCACCGCTCTCCTTTTTGTACCAAATTAGTATACTAACTTCACTGGTTGAAAGTCATGTGAGCATTTGCTTGGCTCATCTTTGGTAATATGTGAAAGCTGCACTATTTACCTCTGCAGAAATAAATATGATTGGATTATTTTGTTGTGTATGAAATAAAGTGATTTTATATGAA

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0045744 negative regulation of G protein-coupled receptor signaling pathway biological_process
GO:0010648 negative regulation of cell communication biological_process
GO:0048585 negative regulation of response to stimulus biological_process
GO:0023021 termination of signal transduction biological_process
GO:0055085 transmembrane transport biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0023057 negative regulation of signaling biological_process
GO:0009968 negative regulation of signal transduction biological_process

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798099.1 True 3580 mRNA 0.43 2 17654902 17658625
XM_039798100.1 False 3034 mRNA 0.46 3 17654623 17658625

Neighbor

gene id symbol gene type direction distance location
LOC120557612 NA coding upstream 9718 17640646 ~ 17644905 (+)
LOC120557609 tmem43 coding upstream 36675 17610316 ~ 17617948 (+)
ndufaf3 ndufaf3 coding upstream 49529 17602657 ~ 17605094 (+)
si:ch1073-335m2.2 LOC104949008,LOC103357917 coding upstream 75707 17557920 ~ 17578916 (+)
fblim1 LOC104949010 coding upstream 99259 17549523 ~ 17555364 (+)
tmcc1b LOC103357903,LOC102207997,LOC101484470,LOC100708690,LOC102775589 coding downstream 4636 17663261 ~ 17680433 (+)
LOC120557621 NA coding downstream 22614 17681239 ~ 17684221 (+)
LOC120556839 NA coding downstream 31998 17690623 ~ 17698228 (+)
LOC120556837 NA coding downstream 47590 17706215 ~ 17719329 (+)
LOC120556840 LOC102792430,LOC100693756,LOC102298411,LOC101487248,LOC104946168,LOC102193684 coding downstream 110861 17769486 ~ 17780828 (+)
G39588 rhoaa,LOC106583462,LOC103374076,LOC105900164,LOC107679616,LOC105026930,LOC107591788,LOC108265880 non-coding upstream 32116 17620723 ~ 17622507 (+)
G39580 LOC103357913,LOC102778940 non-coding upstream 47109 17606965 ~ 17607514 (+)
G39579 NA non-coding upstream 47807 17605823 ~ 17606816 (+)
G39533 NA non-coding upstream 63638 17589710 ~ 17590985 (+)
G39522 NA non-coding upstream 122699 17531522 ~ 17531924 (+)
G39626 LOC103357902 non-coding downstream 26369 17684994 ~ 17686581 (+)
G39630 NA non-coding downstream 31179 17689804 ~ 17690576 (+)
G39633 NA non-coding downstream 56787 17715412 ~ 17722348 (+)
G39638 NA non-coding downstream 76861 17735486 ~ 17735906 (+)
G39654 NA non-coding downstream 126634 17785259 ~ 17785810 (+)
G39581 LOC104949003,LOC103357913 other upstream 45407 17607930 ~ 17609216 (+)
LOC120557637 minos1,LOC103357934 other upstream 277063 17371483 ~ 17377560 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other upstream 456406 17193151 ~ 17198217 (+)
G39351 NA other upstream 534733 17112113 ~ 17119890 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other upstream 607927 16964617 ~ 17046696 (+)
LOC120556838 NA other downstream 61816 17720441 ~ 17734011 (+)
wnk2 wnk2,LOC104946158 other downstream 246073 17904698 ~ 17930118 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other downstream 530957 18189582 ~ 18194911 (+)
LOC120557740 acy1 other downstream 557081 18215706 ~ 18226578 (+)
oxtrl LOC104920519,LOC103360274,LOC100702815,LOC102207462,LOC102295060 other downstream 1637634 19296259 ~ 19314826 (+)

Expression


Co-expression Network