LOC120557606 (vwa1)


Basic Information

Item Value
gene id LOC120557606
gene name vwa1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17426082 ~ 17436565 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798116.1
ACTAGGAGAGAAGTTATGTTCCATAAGAAGTAGGCTACTGTAACGTCACATTAATGGAAATAACTGCAAAGCGCAAACATTGCAGTAGGCTACGCATGACGCAGGTGTTTGCTGAAGAAAAGTTTGGATGACGTGCAGTAGCAAAACTCTGCGGAAGTGGCAAAATAACACAGACTGGACCATCTGTGACAGTGATCTGTGCGATGGAAACTGGTGAAGGAACCCCATAGAAGGGAGAGTCGGTGTTGGCTATTTCACCTGCCTGCGCTGTTTCTGATCaaattcatatatttttttccagtgCTGTTTAGAAAGGATGACTGTTTTTTTACTTCGCTGTGTTCTTCTCTGCGCGATGTTGCAGCGGAGCAACATGCAGATTGCTGTACCTGCCACAGTGTTAAACTGCTGTGAAGGGCATATTCTCCTTCTGCTGGACTCTTCAGGAAGTATAGCAAACTACGAGTTCTTACGCCTGTTGCACTTCGTCACCGAGCTGCTTCGCCCCTTCTCATTGGGCCGTGGGCACGTAAGAGTCGGGCTGCTGCAGGTGGGCACAAATCCTAACCTGGAGTTCGGCCTGGACGTCCACAGCAATCAGGAAGGTCTGCAGAAAGCTCTGCGGAGTGTCAGCCAGCTACAGGGAGACACCAACACCGAGGCAGCGCTCAGGGTGGCGCAGCAGCTTCTGACAGAGACAGATGAGAACGTGCCAAAGATTCTGCTGTGGCTGACGGATGGTGTGCAGCCTGGAGACGTGGACGAACCGATGTCGGAGCTGAAGGCGCAGGGAGTTTCTGTTCTAGCTGTGTCTACAGTACATGGCAACTACCAGGTGTTACAACGTGCAGTGACACCTCCACTGGAGTCTCACCTCTACTCTGTGGACATAGATAACATCGACATCATCACAGAGGACCTGAGGGAGGCCATTatcaAAATTATTcgtgcagaacggctgcgtgtGGTTCACGTGACTTCCCACAGTGCTGTGCTGCAATGGCGTCCTGTTCTGAGTGCTGACAACGGTTACTATGAGCTCTCGTACAAATCTAGGTGGAAAACGGACACTGAAACTAGACGCATTCTCCCAGGCGACTCCAGCTGGGTAGAGCTGACCAAACTCCAGCCTGAAACCACCTACACAGCTGCCCTCCGCCCAGAGTCCAACCAGGGGCTGTTTAACACACTCTCTGTTGACTTCACTACACTTCCTGATATTTTAAGCCCGACAGTCGTCTCTGTGTCAGACTCTGGGCCTCGTCAGATCCGTGTGAGCTGGGGTCCCCTGCAGCCGGCTCGAGTCCAGAGATATACTGTTGAGTATGGAGCTATTCCAAGCGGACACGTCCACACCGTTACATTACGAAACCAACAGAACTCTACCTTGCTGAACGGCTTGGAGCCGGGCACTCTGTACCTGGTCACAGTCAGTGCTCTGCATGTGAATGGAAAAGAAAGAGCCATGTCTGTAAGGGCATGCACTCAAGAGGCAGCTCTGGCCGACCTTCGGTTGACCACAGTGGAGCGTCAGGAGGTGCAAGTAACATGGAAGGCCCATCAGGAAGGTTTGAAAGGCTTCTGGCTGAGCTGGGAGGGAGAATTCTCTAAAAGCTCCTCCTCGAAGCCCTCCGCGTACCTGCCTCCTACCTCTCATTCAACGCGTCTCACGCGCCTTGCACCGAGCAGTCGAGTGTGTGTGTCCCCAGTCTATGGCTGGGGCCGAGGAGACGGGTTATGCTGCACTGCAGAGAGGCACACACGTTGGCTCAGCTGAATATTATTAActgctttttttcttaattCCTGCAATTATGCTCATGCATAGCAGGTTTGGTTCATTAAAGGGAATTGTAATTTTT
>XM_039798117.1
ACTAGGAGAGAAGTTATGTTCCATAAGAAGTAGGCTACTGTAACGTCACATTAATGGAAATAACTGCAAAGCGCAAACATTGCAGTAGGCTACGCATGACGCAGGTGTTTGCTGAAGAAAAGTTTGGATGACGTGCAGTAGCAAAACTCTGCGGAAGTGGCAAAATAACACAGACTGGACCATCTGTGACAGTGATCTGTGCGATGGAAACTGGTGAAGGAACCCCATAGAAGGGAGAGTCGGTGTTGGCTATTTCACCTGCCTGCGCTGTTTCTGATCaaattcatatatttttttccagtgCTGTTTAGAAAGGATGACTGTTTTTTTACTTCGCTGTGTTCTTCTCTGCGCGATGTTGCAGCGGAGCAACATGCAGATTGCTGTACCTGCCACAGTGTTAAACTGCTGTGAAGGGCATATTCTCCTTCTGCTGGACTCTTCAGGAAGTATAGCAAACTACGAGTTCTTACGCCTGTTGCACTTCGTCACCGAGCTGCTTCGCCCCTTCTCATTGGGCCGTGGGCACGTAAGAGTCGGGCTGCTGCAGGTGGGCACAAATCCTAACCTGGAGTTCGGCCTGGACGTCCACAGCAATCAGGAAGGTCTGCAGAAAGCTCTGCGGAGTGTCAGCCAGCTACAGGGAGACACCAACACCGAGGCAGCGCTCAGGGTGGCGCAGCAGCTTCTGACAGAGACAGATGAGAACGTGCCAAAGATTCTGCTGTGGCTGACGGATGGTGTGCAGCCTGGAGACGTGGACGAACCGATGTCGGAGCTGAAGGCGCAGGGAGTTTCTGTTCTAGCTGTGTCTACAGTACATGGCAACTACCAGGTGTTACAACGTGCAGTGACACCTCCACTGGAGTCTCACCTCTACTCTGTGGACATAGATAACATCGACATCATCACAGAGGACCTGAGGGAGGCCATTatcaAAATTATTcgtgcagaacggctgcgtgtGGTTCACGTGACTTCCCACAGTGCTGTGCTGCAATGGCGTCCTGTTCTGAGTGCTGACAACGGTTACTATGAGCTCTCGTACAAATCTAGGTGGAAAACGGACACTGAAACTAGACGCATTCTCCCAGGCGACTCCAGCTGGGTAGAGCTGACCAAACTCCAGCCTGAAACCACCTACACAGCTGCCCTCCGCCCAGAGTCCAACCAGGGGCTGTTTAACACACTCTCTGTTGACTTCACTACACTTCCTGATATTTTAAGCCCGACAGTCGTCTCTGTGTCAGACTCTGGGCCTCGTCAGATCCGTGTGAGCTGGGGTCCCCTGCAGCCGGCTCGAGTCCAGAGATATACTGTTGAGTATGGAGCTATTCCAAGCGGACACGTCCACACCGTTACATTACGAAACCAACAGAACTCTACCTTGCTGAACGGCTTGGAGCCGGGCACTCTGTACCTGGTCACAGTCAGTGCTCTGCATGTGAATGGAAAAGAAAGAGCCATGTCTGTAAGGGCATGCACTCAAGAGGCTCTGGCCGACCTTCGGTTGACCACAGTGGAGCGTCAGGAGGTGCAAGTAACATGGAAGGCCCATCAGGAAGGTTTGAAAGGCTTCTGGCTGAGCTGGGAGGGAGAATTCTCTAAAAGCTCCTCCTCGAAGCCCTCCGCGTACCTGCCTCCTACCTCTCATTCAACGCGTCTCACGCGCCTTGCACCGAGCAGTCGAGTGTGTGTGTCCCCAGTCTATGGCTGGGGCCGAGGAGACGGGTTATGCTGCACTGCAGAGAGGCACACACGTTGGCTCAGCTGAATATTATTAActgctttttttcttaattCCTGCAATTATGCTCATGCATAGCAGGTTTGGTTCATTAAAGGGAATTGTAATTTTT

Function

symbol description
vwa1 Predicted to be active in collagen-containing extracellular matrix. Orthologous to human VWA1 (von Willebrand factor A domain containing 1).

NR:

description
PREDICTED: von Willebrand factor A domain-containing protein 1 isoform X2

GO: NA

KEGG:

id description
K24507 VWA1; von Willebrand factor A domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798116.1 True 1862 mRNA 0.51 5 17426082 17436565
XM_039798117.1 False 1859 mRNA 0.51 5 17426082 17436565

Neighbor

gene id symbol gene type direction distance location
LOC120557631 tmem88b,LOC102785261 coding upstream 28558 17390537 ~ 17397524 (+)
nbl1 nbl1,LOC104928003 coding upstream 40308 17378179 ~ 17385774 (+)
dstyk dstyk coding upstream 141790 17258191 ~ 17284292 (+)
ccnd3 LOC104957029 coding upstream 186178 17235220 ~ 17239904 (+)
bysl bysl coding upstream 191324 17229640 ~ 17234758 (+)
LOC120557619 NA coding downstream 6086 17442651 ~ 17445993 (+)
fndc10 NA coding downstream 13163 17449728 ~ 17452057 (+)
ssu72 ssu72 coding downstream 16257 17452822 ~ 17457991 (+)
LOC120557636 NA coding downstream 22359 17458924 ~ 17462722 (+)
sdhb LOC106929635,LOC103130297,LOC107085616,LOC105927147,LOC103465156,LOC103357925 coding downstream 36748 17473313 ~ 17480092 (+)
G39434 NA non-coding upstream 30260 17351706 ~ 17395822 (+)
G39437 NA non-coding upstream 118375 17307055 ~ 17307707 (+)
G39433 NA non-coding upstream 127890 17297992 ~ 17298192 (+)
G39427 celsr2 non-coding upstream 136566 17288439 ~ 17289516 (+)
G39358 strip1 non-coding upstream 266846 17157903 ~ 17159236 (+)
G39486 NA non-coding downstream 25299 17461864 ~ 17462250 (+)
G39484 NA non-coding downstream 26973 17463538 ~ 17464778 (+)
G39489 NA non-coding downstream 29522 17466087 ~ 17466596 (+)
G39509 NA non-coding downstream 63498 17500063 ~ 17501224 (+)
G39516 NA non-coding downstream 74305 17510870 ~ 17512831 (+)
LOC120557637 minos1,LOC103357934 other upstream 48522 17371483 ~ 17377560 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other upstream 227865 17193151 ~ 17198217 (+)
G39351 NA other upstream 306192 17112113 ~ 17119890 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other upstream 379386 16964617 ~ 17046696 (+)
G39116 NA other upstream 882502 16517536 ~ 16543580 (+)
G39581 LOC104949003,LOC103357913 other downstream 171365 17607930 ~ 17609216 (+)
LOC120556838 NA other downstream 283876 17720441 ~ 17734011 (+)
wnk2 wnk2,LOC104946158 other downstream 468133 17904698 ~ 17930118 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other downstream 753017 18189582 ~ 18194911 (+)
LOC120557740 acy1 other downstream 779141 18215706 ~ 18226578 (+)

Expression


Co-expression Network