ccnd3 (LOC104957029)


Basic Information

Item Value
gene id ccnd3
gene name LOC104957029
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17235220 ~ 17239904 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798139.1
ATGACctgaggctagctagctacatagcCGCGGATCCTAGCTACACCATTAGGTTCACAGTTCTGACAAATTCCAGATTTTTCTTATAGACCAGGATGGAATTGATGCAATTTTCTGTAAAATACTAATCTGACGCCCAGTTGAGCAGTTTATAAGGACGCCTTAAAACAAGGTGGCGGTTTGTGAACGTTACAGGAGAGGTAACTAGCATAGCTAGCCAACATTAGCTAACTAAAATAACGGTTAACCGCTAGCTAGCTTAACTGCATAATGTTATAAATACGGTATATTGATATGTTAATGATTAGTGGAAGCCATACTGAATGCTACTCTCTATAACTTCGTCGAATGGATCTTTGTGAGGATGGACGGCTTTAGTGCATCCGGAGATATAAATGCCGGTGAAACGGGACACGGTGTGGTTCTCCGGGCGGGCAGCGACCATCCCGTGACCAGCGACCTCAGAACACTGCACAACCTGACGGCCCTGGAGAAGACCTGCCGGGTGTCTCCTTACTTTGGCGTAGTCCAGACAGACATCCAGCCACACATGCGAAGGATACTGGCAGTATGGATGTTTCAGGTGTGTGAGGAGCAGAAATGTGAGGAGGAGGTGTTTCCACTGGCAGCGCATTACCTGGACTGCTACCTGAGCCATTTCGCCATTGAAAAGTTCAACCTGCAGCTTTTAGGTTGTGTTTGCATGTTCCTGGCCTCCAAAATGAGAGAGACCGTCCATCTGACTGCCAGCAAGCTTTGTATCTACACAGACAACTCAATTTCAGTCTCAGACATTCTGcAGTGGGAGGTAGCAGTGGTGTCCAGGTTAGACTGGTGTCTGGCGTCTGTGGTACCCTCTGACTTCCTGGAGCCAGTTCTTCATGCTCTCCCCTTGGTTCGGCCCCACCACCTTCCTAACATGCGCAGGCATGTTCACTCTTACATTGCTGTGGCAGCCACTGACTGCAGGTTTTCAGTGTTCTTGCCCTCCACTGTTGCATGTGCCTGCGTGAGCATTGCCACGCAGAGGCTGAAGTTAGTGGACGCTGCTGTCTCCTCTGATTCAGTGATGACGTTTTTGGCCAACCTTTTGGTCATTGATCTGAGCACGGTCATTCTCTGCTATGACCAGCTAGGGAGTGTGTTGGAGCGCAGCCTGCCCTCTTGTTTCCAGGCTAGTGTTTGCAGATCAGGAGCTCACAGCTCAGAGATCAGCTACACCCCTGCTGACTTTCAGGATGTTGTATTGACACCAGTGGCATCAACCCAGGAAATCAAGCTAAAGCACACCTCCCTGACATGAATGGCTAGAATGAATTGTAAATTCACTGCCATGAAGCACAACAAGAAGCCTAAATACCAGGCAAAATGTGTCTTAAGGCCATTTCTCCTTAATCTTAATTGTTCTTTTGCAAGTTGATTGTTTTGGAGATCCCTCTGTGACGTGAAGAGCTGTCACTGTTTAACATTTGTTTGTCCAACCTGTTGCTGCTCgttttaaaatattttgcaATTGCCAAAGCAGCTTTGAAAGATGGAATATTTCAGATTCATGATACATTAACGTTGTGATATTGACAGTTGAATTGCACTGAATCCTAATAGCAATGtttgcacattttaaatgtattatccTCTATTCATATGTATTCGTATATATTAGCACTTACCTGGATCCATTGATATTTTAATATAAGGTTTTTATCTGGACAGTTTCGATAAGTTTAAATAGATGTTTCTGCATGGTTTCAAAAGAGTAATGAATTCCTTTGTGGCTATAAATCAATACTGTCATGACATAAAAgacaatacaaaacatttgtATGTAGGTCACTAACGACATTAA

Function

NR:

description
G1/S-specific cyclin-D2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798139.1 True 1846 mRNA 0.44 5 17235220 17239904

Neighbor

gene id symbol gene type direction distance location
bysl bysl coding upstream 462 17229640 ~ 17234758 (+)
tmcc2 tmcc2,LOC102788388 coding upstream 19063 17209900 ~ 17216157 (+)
cdkn1a NA coding upstream 26561 17203651 ~ 17208659 (+)
LOC120557584 LOC104939527,LOC103362890,LOC102214906,LOC102790228 coding upstream 90493 17127395 ~ 17144727 (+)
LOC120558072 LOC103362892,LOC104950939 coding upstream 132443 17097697 ~ 17102777 (+)
dstyk dstyk coding downstream 18287 17258191 ~ 17284292 (+)
nbl1 nbl1,LOC104928003 coding downstream 138275 17378179 ~ 17385774 (+)
LOC120557631 tmem88b,LOC102785261 coding downstream 150633 17390537 ~ 17397524 (+)
LOC120557606 vwa1 coding downstream 186178 17426082 ~ 17436565 (+)
LOC120557619 NA coding downstream 202747 17442651 ~ 17445993 (+)
G39358 strip1 non-coding upstream 75984 17157903 ~ 17159236 (+)
G39308 NA non-coding upstream 152644 17080666 ~ 17082576 (+)
G39304 LOC103362894 non-coding upstream 181269 17049797 ~ 17053951 (+)
G39302 LOC102778475,LOC101478284,LOC100692415 non-coding upstream 186855 17047935 ~ 17048365 (+)
G39210 NA non-coding upstream 411964 16818746 ~ 16823256 (+)
G39427 celsr2 non-coding downstream 48535 17288439 ~ 17289516 (+)
G39433 NA non-coding downstream 58088 17297992 ~ 17298192 (+)
G39437 NA non-coding downstream 67151 17307055 ~ 17307707 (+)
G39434 NA non-coding downstream 111802 17351706 ~ 17395822 (+)
G39486 NA non-coding downstream 221960 17461864 ~ 17462250 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other upstream 37003 17193151 ~ 17198217 (+)
G39351 NA other upstream 115330 17112113 ~ 17119890 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other upstream 188524 16964617 ~ 17046696 (+)
G39116 NA other upstream 691640 16517536 ~ 16543580 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other upstream 799991 16433238 ~ 16435229 (+)
LOC120557637 minos1,LOC103357934 other downstream 131579 17371483 ~ 17377560 (+)
G39581 LOC104949003,LOC103357913 other downstream 368026 17607930 ~ 17609216 (+)
LOC120556838 NA other downstream 480537 17720441 ~ 17734011 (+)
wnk2 wnk2,LOC104946158 other downstream 664794 17904698 ~ 17930118 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other downstream 949678 18189582 ~ 18194911 (+)

Expression


Co-expression Network