LOC120557621


Basic Information

Item Value
gene id LOC120557621
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17681239 ~ 17684221 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798143.1
ttctctgctttgaccCAGACTCCGCTTGATTCAGTAAACAAACCTGCTTCAGCATGACTTCACCCAGCCTTCCCAAAGTAGATCTAATTTACAGACTAACCACATTCGACTGTTTTTTGACTTTAGAGcttattaaaataaatcttaACATGAAATGCACCTGTGATAGTGCTCAATATCAGAGGATCCCAAACCTAATTGCTTTCAGGAAAACGGTgttaaccatggatgtatttgtTAACTCACTTTCTCTAAAGTGTGAACGCTTAACCGTTGCTAAGCAACATGAAAAGCAGTTGGCGGCTGTCAATAGAACCTTAGCCACCTTAGCAAACTGCTAACGCTAAACCGCAGTGTTGCTGTTTATGAGATTTATTTTGCACGCAACGTTTCCAAACTGAATGCCAAGCACGTACTGTACATTGTTTACggattaaaaacaacaacaccacGCTAAATGCTTTTAATTAACGTTACCAAGGCCAAGTGAAAATATTTTATCGACACCAAgtggctagctaggctagctAAGCTAACGTTGCAGCCGTCATCATGATGCATGACAGGTTGGAAGTCACCGAAATAGACAACTTAATTTGAAGCAAGGTGACCGGTGATCTATCTAGCCTACTACTACTCTTCAGCTGGAGCTGTAGTGTCCAAGCTGAGAAAAATGTCCTTCCATTATCCGCAAATGTTTGGCAGCAGTGATAACATTGCATCCCTGAAAGACTTGGATGAAACCCAGGTAGATGAGGATGTTGGCTCTGAGGAAACGAGGGTCCTGAGGACAGGGCAGCTGCAGTCCAGCCCGAAGTATggctgtgatgatgatgatgatgatgatactaCATCTGGTTCTGCAGGAATCCCTAGCTCCAGGGACAATACACCTGACCATGCCCAGGCATCAGAATATAATGCTATACTCCATGAAATCCAAGAGCTCAGGGAAAACAAAGGCCAACTTGAGGAATGCTTGGAAAACTTAAAATACTATCATCAACGAGACTACACAGTGATTGTGGAGGCCCTACAAGAGGAGCGATACAGGAGTGAACGTTTAGAAGAACAGCTCAATGACTTGACAGAACTGCACCAGAATGAAATTTTTAACTTGCAAGAGGAACTAGCCAGCATGGAGGAGAAGACTGCTTATCACTTTTATGGCAGAGCAACAGATATTCATGAGGCGCTGAAGGCATGTCAGACACGTCTGTTCAAGATGGAGCATCAACAGCAGGTGGTGCAGCTTGAAGGCTTGGAGAACAGCACAGCACGGACTCTTCTTGGAAAACTAATCAGTGTGCTGCTGGCTGTTATGGCAGTCATTTTAGTGTTTGTGTCCACAGTGGCTAACTGTGTCATCCCTTTAATGAAAACATACAGCCGCATGCTTTCTACAATGTTTTTTGTAGttctcttctccttcctctGGAGGCACTGGGATGCCATTTCAGAATATCCTAATCACTTTTGCACTCTTCTTGAAAAGAGAAACAATCAATAAAACAGTCAACTCAAA
>XM_039798144.1
CAGTCTGGGAGAAGTCAGTCAAGTGCAGTCTGTACAGCCTACAGTCCTGAGAAAAGGTCTAATCAGACTCAACAATTTAAATCACCTGGGTCGACCAGACGTGCACAGGGCATCTTAAAGACTTTTTCCCCTCTCCATGCACCTTGGAGGTGACCGGTGATCTATCTAGCCTACTACTACTCTTCAGCTGGAGCTGTAGTGTCCAAGCTGAGAAAAATGTCCTTCCATTATCCGCAAATGTTTGGCAGCAGTGATAACATTGCATCCCTGAAAGACTTGGATGAAACCCAGGTAGATGAGGATGTTGGCTCTGAGGAAACGAGGGTCCTGAGGACAGGGCAGCTGCAGTCCAGCCCGAAGTATggctgtgatgatgatgatgatgatgatactaCATCTGGTTCTGCAGGAATCCCTAGCTCCAGGGACAATACACCTGACCATGCCCAGGCATCAGAATATAATGCTATACTCCATGAAATCCAAGAGCTCAGGGAAAACAAAGGCCAACTTGAGGAATGCTTGGAAAACTTAAAATACTATCATCAACGAGACTACACAGTGATTGTGGAGGCCCTACAAGAGGAGCGATACAGGAGTGAACGTTTAGAAGAACAGCTCAATGACTTGACAGAACTGCACCAGAATGAAATTTTTAACTTGCAAGAGGAACTAGCCAGCATGGAGGAGAAGACTGCTTATCACTTTTATGGCAGAGCAACAGATATTCATGAGGCGCTGAAGGCATGTCAGACACGTCTGTTCAAGATGGAGCATCAACAGCAGGTGGTGCAGCTTGAAGGCTTGGAGAACAGCACAGCACGGACTCTTCTTGGAAAACTAATCAGTGTGCTGCTGGCTGTTATGGCAGTCATTTTAGTGTTTGTGTCCACAGTGGCTAACTGTGTCATCCCTTTAATGAAAACATACAGCCGCATGCTTTCTACAATGTTTTTTGTAGttctcttctccttcctctGGAGGCACTGGGATGCCATTTCAGAATATCCTAATCACTTTTGCACTCTTCTTGAAAAGAGAAACAATCAATAAAACAGTCAACTCAAA

Function

GO:

id name namespace
GO:0043570 maintenance of DNA repeat elements biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03430 Mismatch repair
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798143.1 True 1525 mRNA 0.43 4 17681414 17684221
XM_039798144.1 False 1068 mRNA 0.45 4 17681239 17684221

Neighbor

gene id symbol gene type direction distance location
tmcc1b LOC103357903,LOC102207997,LOC101484470,LOC100708690,LOC102775589 coding upstream 806 17663261 ~ 17680433 (+)
LOC120557598 NA coding upstream 22614 17654623 ~ 17658625 (+)
LOC120557612 NA coding upstream 36334 17640646 ~ 17644905 (+)
LOC120557609 tmem43 coding upstream 63291 17610316 ~ 17617948 (+)
ndufaf3 ndufaf3 coding upstream 76145 17602657 ~ 17605094 (+)
LOC120556839 NA coding downstream 6402 17690623 ~ 17698228 (+)
LOC120556837 NA coding downstream 21994 17706215 ~ 17719329 (+)
LOC120556840 LOC102792430,LOC100693756,LOC102298411,LOC101487248,LOC104946168,LOC102193684 coding downstream 85265 17769486 ~ 17780828 (+)
LOC120557367 LOC103359635,LOC102796318,LOC100691863,LOC101486295,LOC102211045 coding downstream 177125 17861346 ~ 17870786 (+)
LOC120557366 LOC103359651,LOC102211705,LOC101487058,LOC102294841,LOC102795823 coding downstream 189883 17874104 ~ 17888579 (+)
G39588 rhoaa,LOC106583462,LOC103374076,LOC105900164,LOC107679616,LOC105026930,LOC107591788,LOC108265880 non-coding upstream 58732 17620723 ~ 17622507 (+)
G39580 LOC103357913,LOC102778940 non-coding upstream 73725 17606965 ~ 17607514 (+)
G39579 NA non-coding upstream 74423 17605823 ~ 17606816 (+)
G39533 NA non-coding upstream 90254 17589710 ~ 17590985 (+)
G39522 NA non-coding upstream 149315 17531522 ~ 17531924 (+)
G39626 LOC103357902 non-coding downstream 773 17684994 ~ 17686581 (+)
G39630 NA non-coding downstream 5583 17689804 ~ 17690576 (+)
G39633 NA non-coding downstream 31191 17715412 ~ 17722348 (+)
G39638 NA non-coding downstream 51265 17735486 ~ 17735906 (+)
G39654 NA non-coding downstream 101038 17785259 ~ 17785810 (+)
G39581 LOC104949003,LOC103357913 other upstream 72023 17607930 ~ 17609216 (+)
LOC120557637 minos1,LOC103357934 other upstream 303679 17371483 ~ 17377560 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other upstream 483022 17193151 ~ 17198217 (+)
G39351 NA other upstream 561349 17112113 ~ 17119890 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other upstream 634543 16964617 ~ 17046696 (+)
LOC120556838 NA other downstream 36220 17720441 ~ 17734011 (+)
wnk2 wnk2,LOC104946158 other downstream 220477 17904698 ~ 17930118 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other downstream 505361 18189582 ~ 18194911 (+)
LOC120557740 acy1 other downstream 531485 18215706 ~ 18226578 (+)
oxtrl LOC104920519,LOC103360274,LOC100702815,LOC102207462,LOC102295060 other downstream 1612038 19296259 ~ 19314826 (+)

Expression


Co-expression Network