ssu72 (ssu72)


Basic Information

Item Value
gene id ssu72
gene name ssu72
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17452822 ~ 17457991 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798155.1
TAACGGGGCGCCGCCATTTTAACTTCCTGTATCAAAAGAAAGCGAGTCAGTCGCACAGCATTTGTACTCGAAACGTTTTCTTAGTTAGTGTAACGAAAGGGgtctgtcttgtttttttttttcagggagCAAACTAACTACCTCTGTATAGTTTCTGACAGCTTGTGTCGGTTAGTTTCAGCCGGAGAGACGCAATGCCGAGCCACCCGCTGCGTGTAGCGGTTGTGTGCTCGAGCAACCAGAACCGCAGTATGGAAGCGCACAGTATCCTCAGCAAACGTGGATTTGATGTGCGTTCATTTGGGACAGGGTCTCACGTGAAGCTACCCGGTCCTGCCCCGGATAAGCCAAATGTGTATGACTTCAAAACGACATATGTACAGATGTACAACGACTTGGTCCGCAAGGACAAGGAACTATACACACAGAATGGCATCCTGCACATGCTGGACCGCAACAAGCGCATCAAATCAAAGCCAGAGCGCTTTCAAAGCTGCAAGGAGAAGTTTGACCTGGTCATCACATGTGAAGAGAGAGTCTATGACCAAGTGCTGGAGGATCTGAATTCAAGAGAGCAGGAGACTCTACAGCCTGTGCATGTTATCAATGTAGACATTCAGGATAACCACGAGGAAGCCACGCTGGGCGCCTTCCTCATCTGTGAGCTGTGTCAATGTATCCAGCACACTGAGGACATGGAGGATGAAATGGATGAGCTCATACAAGAGTTTGAGGAGAAGAGCAACAGGCCTTTTCTTCACACTGtctgtttctactgatacacaATAGAAATTTGCAATAAACGCAGACCCGGATCACAAGCAATCAAAcaatatggacacacacacacacacacacacacacacacacacacacacttcttactCCTCACTCCTCAGTCATCTACAAcactctttatatacagtctatgccacaacacaatacatgcacattgtgtgcctacacacacacacacacacacacacctttgggTCAGGACCTAAAAAATGGCTGCTGGTGATGATGGGTCTTTCCTCTATGCAGAGGACGGACTCGCTGCTCTCGCGCTGCCTTTATTTCTCCGGATCAAGGTCAGGCCAAGGAGGTCCTCCCTCAATCCCAGTCCAGTGAAACCGCTCGACCATGTCTCCTCAGGGAGAGCCATTAACACCCACACCCTTGATTCAACAACTCCTTTACCAGTCCCTTTTGATTTTGTTCAGTACAGCATATTAacgctgttttttgtttttggcaaattatatataattgtaATTCATTTAAGTCAGATTTTTATTGCTGACCTGGGGCAGTGTAATTGTTTATCTCGGGGTCAGACAGGAAGGGGAGAATGAACtgaatgcatgtgtatgtgcgaCCATGTGTTGTAGATTAGTTTGGATTAAGTTTAAGTGGGTGGGCTGATAATGAATAACCAAACCTAGACCTCTCTAAGGCTCTCCTCCAGTGTGTTTCCAATATAATGTGTTGATTCATATTTAAACTTGGATATGCTGTTTTTCAGGgcgtagtattttttttttcttttgtaaatgtTAAAGAATTGAAGCATTGTAATTATTTGCAAACTGCGAGCTCAGCTCAGAGTGCCTGATTTTTCTGTATGTACATATGAATCCTCTAAAGAAAGAAACCTCTCTAAAAAACA

Function

symbol description
ssu72 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in dephosphorylation of RNA polymerase II C-terminal domain; mRNA polyadenylation; and termination of RNA polymerase II transcription. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Is expressed in central nervous system. Orthologous to human SSU72 (SSU72 homolog, RNA polymerase II CTD phosphatase).

NR:

description
Ssu72 RNA polymerase II CTD phosphatase-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016311 dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798155.1 True 1669 mRNA 0.45 5 17452822 17457991

Neighbor

gene id symbol gene type direction distance location
fndc10 NA coding upstream 765 17449728 ~ 17452057 (+)
LOC120557619 NA coding upstream 6829 17442651 ~ 17445993 (+)
LOC120557606 vwa1 coding upstream 16257 17426082 ~ 17436565 (+)
LOC120557631 tmem88b,LOC102785261 coding upstream 55298 17390537 ~ 17397524 (+)
nbl1 nbl1,LOC104928003 coding upstream 67048 17378179 ~ 17385774 (+)
LOC120557636 NA coding downstream 933 17458924 ~ 17462722 (+)
sdhb LOC106929635,LOC103130297,LOC107085616,LOC105927147,LOC103465156,LOC103357925 coding downstream 15322 17473313 ~ 17480092 (+)
mfap2 mfap2 coding downstream 22868 17480859 ~ 17486877 (+)
fbxo42 fbxo42 coding downstream 67024 17525015 ~ 17531451 (+)
slc25a34 slc25a34,LOC104928013 coding downstream 75074 17533065 ~ 17542138 (+)
G39434 NA non-coding upstream 57000 17351706 ~ 17395822 (+)
G39437 NA non-coding upstream 145115 17307055 ~ 17307707 (+)
G39433 NA non-coding upstream 154630 17297992 ~ 17298192 (+)
G39427 celsr2 non-coding upstream 163306 17288439 ~ 17289516 (+)
G39358 strip1 non-coding upstream 293586 17157903 ~ 17159236 (+)
G39486 NA non-coding downstream 3873 17461864 ~ 17462250 (+)
G39484 NA non-coding downstream 5547 17463538 ~ 17464778 (+)
G39489 NA non-coding downstream 8096 17466087 ~ 17466596 (+)
G39509 NA non-coding downstream 42072 17500063 ~ 17501224 (+)
G39516 NA non-coding downstream 52879 17510870 ~ 17512831 (+)
LOC120557637 minos1,LOC103357934 other upstream 75262 17371483 ~ 17377560 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other upstream 254605 17193151 ~ 17198217 (+)
G39351 NA other upstream 332932 17112113 ~ 17119890 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other upstream 406126 16964617 ~ 17046696 (+)
G39116 NA other upstream 909242 16517536 ~ 16543580 (+)
G39581 LOC104949003,LOC103357913 other downstream 149939 17607930 ~ 17609216 (+)
LOC120556838 NA other downstream 262450 17720441 ~ 17734011 (+)
wnk2 wnk2,LOC104946158 other downstream 446707 17904698 ~ 17930118 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other downstream 731591 18189582 ~ 18194911 (+)
LOC120557740 acy1 other downstream 757715 18215706 ~ 18226578 (+)

Expression


Co-expression Network