LOC120557639 (LOC101468781,LOC102197536,LOC100705767,LOC102779027)


Basic Information

Item Value
gene id LOC120557639
gene name LOC101468781,LOC102197536,LOC100705767,LOC102779027
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 18712940 ~ 18722231 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798168.1
GCTTCAACTGCTCAAGGCAAAGTGTGCATCTTTCAGGTTGAAATGGACCAAAGACAAAACTCACAGGTGAAACAGACTGTGATGGCCCTATGGACCAGAGCAGGACACACTCAACCCAAACTTCAGGAGAGGGACCAGTGGGGCAACAAGATTGAGTTCATCCTGGCAGTAGCCGGACACATTGTCGGTCTGGGAAACGTCTGGAGGTTTCCATACCTTTGCTACAAAAATGGAGGAGgggtTTTCTTCATaccttatgttttgtttttgtttacctGTGGCATCCCACTCTTCTTCCTGGAGACATCTTTGGGCCAGTACACCAGTCAGGGTGGAATAACATGTTGGAGGAAAATCTGCCCTCTTTTTGAAGGCTTAGGTTATGGAAGCCAAGTGGTTGTTTTGTACACTGGGGTGTATTACATCATTATACTGGCTTGGACGTTTCTCTACCTGTTTTCATCCTTCAGGTCTGAGCTTCCATGGGCCAGCTGTAACAACAGCTGGAACACAGATGGCTGTTTTGAGCATGGTCACAATCAAACATCCCCTCTGCACCTGTATGGAAATGGCACGTCTTCGGTTGTAGAATTTTGGGAgAGGAGAATCTTGGGCCTGTCAGGTGGCATTGAGAAAATTGGCAATGTGCGTTGGGACCTGGCCCTTTGTCTTCTTCTTGCCTGGATGTTGTGTTACTTCTGTGTCTGGAATGGAGTAAAGTCCACAGGAAAGGTGGTCTACTTCACTGCCACATTTCCGTATGTTATGCTGGTGGTGCTGCTTGTTCGTGGTCTTACATTACCAGGGGCCAAAGACGGAATCATGTTCTACCTCTACCCAGACCCATCCCGCCTCACTGATCCGGAGGTATGGATGGATGCTGGCAGCCAAATTTTCTACTCCTATGGAGTTTGCACAGGTGTTCTGACATCATTAGGAAGTTACAACAAGTACAGCAACAACTGCTACAgTTTAACCAGCTTTGTAGCTGGCTTCGCCATTTTTTCTGTGCTCGGTTTTATGGCTAAGGAGCAAGGTGTGGATATATCAATGGTGGCTGAATCAGGTCCAGGTTTGGCATTCATTGCTTATCCTCGTGCTGTGGCACTGATGCCACTCCCCCAGCTCTGggctattttcttcttcattatGATCCTCTTTTTAGGATTAGATAGTGAGTTTGTATTACAAGAGGCACTGGTCACAACCATCTCGGACATGTATCCCGACTTCTTTCAAAGCGATTGTCGCCGTAAACTCCTTCTTCTTGCCATTTCTGTTGGAAGTTTCTTTGCTGGCCTTATGATGGTCATGGAGGGAGGCCTTTATATCTTCCAGCTGTTTGACTACTACGCCTGCAGTGGGATGACACTCCTGCTCTTTGCTGTTCTTGAGTCTGTCTGTATTGGATGGGTCTATGGTGCAGATCGTCAGTATGATAATATAAAGGACATGATTGGATATCGACCGTGGCCTTTTATGAAATATTGTTGGCAGTACTTCACACCAGCTATCTGTACTtgcACATTTCTCTTCTCCTTGGTCAAATATACTCCGCTCAAATTCAATAACACTTATGAATACCCCTGGTGGGGCTATGCCATTGGAGGATTTTTCACTCTCTCTTCAACACTTATGGTTCCTTTGTGGATGCTGTATGCTGTAAGTGTCACTCCAGGAACACTGAGACAGAGACTGAAAGTTCTGTGCACTCCAGCAAATGACTTACCTACTGCAATGCTAAAGAAGGCATTAAATACAGAAGCATTTCAGACTTTCACAGGCTTATACACACTGTGCAAGACAGAAAGTCCCAATGACAAAGGCAAAAGAGCTCTGAGATCATCCATTATCTAAACTGCAAGAAAAAAGTACTGGAACAATAAGCCTGAGGAGTGCAGATCCCAAGCAATTTTACTTGTCAGCCAAAACTGCCAAAAATAGCAATTGTTATCTGATTTTTCAGGCTGTGAATGTAAATATACTGTACGATGTCATTTCTATAACCTCTTGTGTGTAGACAATATACTGTGTATCTGATTTATGTTACTGATGATTTTAAAAATCACACTGGAATAATTTTGAGAGTGCTTATTAGTCCATATTAACATCACACGAACACCTGCTTTTCTGTTCAACTGTTTTTACCTGTACAGTAGATACTTAAATCTTTAGAATACACATCTTTCCCCAGACTTCATGTTCTTTTCCACCCCAGGCACTCCATTTCAAAAGTGTAATTTGCCTAAAACCTATTATTTTTCCTACCCAAATGTACCGAGGGATTTTTGTAAAGTA

Function

NR:

description
sodium- and chloride-dependent GABA transporter 2-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798168.1 True 2298 mRNA 0.44 15 18712940 18722231

Neighbor

gene id symbol gene type direction distance location
fkbp5 fkbp5,LOC102778077,LOC101485431 coding upstream 48355 18651305 ~ 18664585 (+)
LOC120556859 NA coding upstream 67823 18639859 ~ 18645117 (+)
trub2 trub2,LOC102777509 coding upstream 96983 18611623 ~ 18615957 (+)
tgfa tgfa,LOC102305789,LOC107385163 coding upstream 114565 18593164 ~ 18598375 (+)
patz1 patz1 coding upstream 133077 18565901 ~ 18579863 (+)
LOC120557775 LOC100711209 coding downstream 9868 18732099 ~ 18737859 (+)
cadpsb cadps,LOC102781224 coding downstream 49335 18771566 ~ 18835468 (+)
cfap20dc LOC104955207,LOC103360140 coding downstream 290961 19013192 ~ 19053017 (+)
si:dkeyp-67f1.2 NA coding downstream 338130 19060361 ~ 19062911 (+)
LOC120556926 fam107a coding downstream 341378 19063609 ~ 19069974 (+)
G39935 NA non-coding upstream 109840 18601716 ~ 18603100 (+)
G39934 NA non-coding upstream 113711 18599024 ~ 18599229 (+)
G39927 NA non-coding upstream 138729 18573982 ~ 18574211 (+)
G39926 NA non-coding upstream 139031 18573682 ~ 18573909 (+)
G39925 NA non-coding upstream 141957 18570591 ~ 18570983 (+)
G40049 NA non-coding downstream 266213 18988444 ~ 18988684 (+)
G40064 NA non-coding downstream 331897 19054128 ~ 19058578 (+)
G40073 NA non-coding downstream 353509 19075740 ~ 19077037 (+)
G40104 LOC102787023,LOC103360233,LOC102206431,LOC101476705 non-coding downstream 446605 19168836 ~ 19169391 (+)
G40109 NA non-coding downstream 450918 19173149 ~ 19178937 (+)
LOC120557740 acy1 other upstream 486362 18215706 ~ 18226578 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other upstream 518029 18189582 ~ 18194911 (+)
wnk2 wnk2,LOC104946158 other upstream 782822 17904698 ~ 17930118 (+)
LOC120556838 NA other upstream 978929 17720441 ~ 17734011 (+)
G39581 LOC104949003,LOC103357913 other upstream 1103724 17607930 ~ 17609216 (+)
oxtrl LOC104920519,LOC103360274,LOC100702815,LOC102207462,LOC102295060 other downstream 574028 19296259 ~ 19314826 (+)
G40164 LOC103360294,LOC104965627,LOC100702547 other downstream 602598 19324829 ~ 19326625 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 702635 19424866 ~ 19426456 (+)
slc38a3b LOC103360384 other downstream 719777 19442008 ~ 19470998 (+)
LOC120557344 LOC104966310 other downstream 894950 19617181 ~ 19632519 (+)

Expression


Co-expression Network