LOC120557706 (LOC104933218,LOC100705047,LOC101475466)


Basic Information

Item Value
gene id LOC120557706
gene name LOC104933218,LOC100705047,LOC101475466
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 4745444 ~ 4767692 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798253.1
ttgtttttttcaggtAGCTGCTTTGTGTTTGGGGAGAAAGGGGTTAACAAGGCAACCAAACGTTTTGGGAAGACGTtgacccccacccctccctttACACAAACAGACCGCCGGCCCCTGCTCGGACTAGCTAGATACGCTGACAAAGTAATGCAGCCGGTTCCAGGTTTCTCTGCACCGGCTCACAGTAACGTTAACGTCGCGGTAACTGTAAGATAGCTAGGCTACGGCAGACCCGGCAGACGTCTGCGCAGCCTGGCTCGTTTGTTTTCTACCTTGTTCACCGCTGCGACTTCCAGCCTGGACAGCCGAGGATGTACGGGAAGATAAGGAGCAGCAAAGGTCAGCGAGCCCCGGATCGATGCTCCTATCGGTGATAGAGAACTAAAAACGGCTCGTTTTTCGCATGAACCCCGGCAGGATTCGGCTCGGCTTCTCGGTCCTTTCCACAGACTCAGGATGAGGAAACCTAAAGTGACTCGGATGGCTTTTGCCTTGTGCCTGGGATGTTTCATTATGGTCCTTCTTTACTTCAACAGCAGTCTGAAGCCAGCCTCGGAGCCAGTCGGGGAAGGAAGCAGTGGGCACAAGTCGAGGAGGAGTCCTCTACAGACACTTTATGATGGTGACCAGGTTGAGTCAGCAGTCCAGGCGATCCATCAGGGTCGAAGGGAGGTGTTGGAAGAAGCCTGCCGCTCCTACACCCGCAAGCGCCGAGTCCTGATCCCCGAGGACCTGAAGCACGTCATCGTGGACGACCAGCACGGCTTGCTGTACTGCTACGTGCCCAAAGTGGCCTGCACCAACTGGAAGCGGGTGCTCATGGTTCTGACGGGCGCCGCCGGGTCTCACCGAGACCCGCTGGCGATCCCTGCCAACGAGGCCCACATCCCGGGAAACCTGCGCACCCTGTCGGAGTACTCCACCTCCCAGATTAACCAGCGCCTGCGCTCCTACCTGAAGTTCGTCTTCGTGCGCGAGCCCTTCGAGCGGCTGGTGTCTGCGTACCGCAACAAATTCACACGGAGCTACAACACTGCTTTTCATAAACGATACGGCACAAAGATAGTGCAGCGGCACAGGCAGGACCCCCAGCCCGAAGCTCTGGAGAGAGGAAACGACGTCTCCTTCGAGGAGTTTGTGTATTACCTCGTGGACCCGGCCACCCAGCGAGAAGAGCCATTCAACGAGCACTGGGAGCGCGTGCACTCCCTGTGCCACCCCTGCCTCATCCACTACGACGTGGTGGGTAAATACGAGACGCTGGAGCAGGACTCCCGCTACGTGCTACAGCTGGCCGGGGTGGAGGACCAGGTCAGCTTCCCCGCCTCATCCAAGAGCACCAGGACTACAGGCGACATGGCGGCTCAGTTCTTCCACAACATTAGCCCCTTCTACCAGAAGAAGCTGTACAACCTCTATCGCATGGACTTCCTGCTCTTCAACTACTCCATACCAGCCTACCTCAAGTTTAGATGAGGCAGGGAGCCTAGGACGTCACTCATCCACAGACCTGACTTAAACATGTGGAGCCTAGACTCTTTGTATTTGTTGAGGCCTTTTTACAGAACATTGCAAATCCTGTCGAAGATGTATCCTGATTAGCGCTCCAGAGTAAATTAATTTTTACAGACTGAAGAACTTCTGTGCACACAGAGGATACACGTAGGAGAGGGCATTTAATCACAAGATGACAGTTGTTGCCTGAAGAAGGCAAATtctattttactgtaaacagtAATCCAGTGGACGTTGGTCACTGACTTTGAAAGTATGAAATACCATTCaactggagaaaaaaacaattcaattttttttttcatttgcacGACAAATGTAACCTGCAGTAGCTTAATGAAAGTATTAAAATCGGACAGTGAATGTCTCCAAACATATGTGCCTCTGATCGTGGGCCTTTTTTTGACCCCCAGCAGACAACGACAACTTTTATAACTGTgactatgtttatttttttgtgccGTAGAAGAGTTTTGTGTAACAGTGAtgttgtcttttatttattgtgttattGCTGACTACAAAGTCAGACAAACCAAAATAGATATATAGTTTATCTCACAATGTTCAAATAAATGCATTTCATCAAGAA

Function

NR:

description
PREDICTED: carbohydrate sulfotransferase 11

GO:

id name namespace
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K01017 CHST11; chondroitin 4-sulfotransferase 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798253.1 True 2110 mRNA 0.51 3 4745444 4767692

Neighbor

gene id symbol gene type direction distance location
txnrd3 LOC103366329,LOC102309132,LOC105934676 coding upstream 15817 4708681 ~ 4729627 (+)
LOC120558218 NA coding upstream 61100 4681878 ~ 4684344 (+)
LOC120557508 NA coding upstream 160087 4584329 ~ 4585357 (+)
LOC120557502 LOC105888650,LOC101068541,LOC107388332,LOC103395674,LOC105896821 coding upstream 173909 4569910 ~ 4571535 (+)
LOC120557505 LOC104935308,LOC104932967 coding upstream 185976 4558575 ~ 4559468 (+)
ppp1r3db LOC104967763 coding downstream 25889 4793581 ~ 4797260 (+)
acot8 acot8,LOC102785802 coding downstream 102022 4869714 ~ 4875274 (+)
ift52 ift52,LOC102785231 coding downstream 107691 4875383 ~ 4879610 (+)
mybl2b mybl2 coding downstream 113514 4881206 ~ 4892779 (+)
rpn2 rpn2,LOC102784465 coding downstream 125757 4893449 ~ 4903690 (+)
G35958 NA non-coding upstream 50879 4691055 ~ 4694565 (+)
G35942 NA non-coding upstream 128047 4615893 ~ 4617397 (+)
G35941 NA non-coding upstream 132440 4610538 ~ 4613004 (+)
G35925 LOC104957620,LOC100698470,LOC102194894,LOC101473847,LOC102310675,LOC102787480 non-coding upstream 135384 4605460 ~ 4610060 (+)
G35834 NA non-coding upstream 375223 4369919 ~ 4370221 (+)
G36022 NA non-coding downstream 32279 4799971 ~ 4800984 (+)
G36025 LOC107550338,LOC103365918,LOC104947949,LOC106955159 non-coding downstream 37353 4805045 ~ 4809978 (+)
G36026 NA non-coding downstream 39999 4807691 ~ 4848220 (+)
G36034 NA non-coding downstream 82062 4849754 ~ 4850038 (+)
G36035 NA non-coding downstream 83562 4851254 ~ 4880394 (+)
G35921 NA other upstream 159969 4487535 ~ 4585475 (+)
LOC120557928 NA other upstream 212582 4529833 ~ 4532862 (+)
G35791 LOC101072424,LOC104921976 other upstream 795316 3948834 ~ 3950128 (+)
epha8 epha8,LOC102791453 other upstream 1155832 3453600 ~ 3589612 (+)
G35618 NA other upstream 1386624 3244231 ~ 3358820 (+)
cdk5rap1 cdk5rap1 other downstream 144007 4911699 ~ 4934164 (+)
G36156 LOC103374102 other downstream 1153232 5920924 ~ 5924400 (+)
rybpb rybp other downstream 1267380 6035072 ~ 6055216 (+)
prok2 prok2,LOC103355444 other downstream 1336921 6104613 ~ 6107152 (+)
foxp1b foxp1 other downstream 1371771 6139463 ~ 6306143 (+)

Expression


Co-expression Network