LOC120557724 (cenpp,LOC104951285)


Basic Information

Item Value
gene id LOC120557724
gene name cenpp,LOC104951285
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 29485167 ~ 29595866 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798289.1
TAACCATATTTTTCTTGGTTAGCTCAAACCCGTTGTAATCATTCTTGATTACCATCAGCTGTTACAGATACGGCTTACAATGTAGAAGGGTCTATCAAACTTTCCAGCTCGACAAGAAATAGTTTCTTCTCCCCTCCGACACGTGAAAAGTGGTAGAGTCCGGAGGGCGCGAGGCTCCAAACTGTTTTGGTTGTCAGCAGCAGAGGGAAGACAGAAATCGTTCAgGATGATGGAGAAGATGAGCGAGGAGAACATTGAGGATGTTAGAGTGCTGGAGGCTCAGATTGAGCATCTTCAGGCAGAAGTTGCAGCGTTGCAGCGCCAACAGCAGGACAACCACAAGGACATAACGTTCCACTTAAGAGGACACATGCAGGATGCCATGTCATATGTGTGTGGACAGAAACAAGcaggagagaaggagaaggtACTGTCCAAGCTAacggaggaggtggaggagctggaggaggatcTGAAGCTCCAGACACAGATGAATGGCATCAGTCTGAACAGCTGCACGACAAAGACTCTACAAAGCAGTGGCAGACAGCTGGTCCAGCAGCTCTGTGTATCAGGTCACTGCTCTGAACTGGTCTTCCAGGTGGAGTTCCTCCTCTCTGAGGTCAAGAAGAGTCAGAGATCTGAGAGGACGATCCGTGATCTTAACGTGGTGATGGACACCAGCGACCTACAGAACTTCAGCAGTTTCCTTTCTGGGGTGGAGGAGAGCACGGATCTTTTGCTGTTCTTCAGGACTCTCAGGACTTTCTCAGACAGGTGTGACGACCGGCGCAGAACCTTCCAACACTTCCAGGAGAAGTATCCGTCTGTCGTCTCTCTTCCTGGAGGCTGCAGGTCAGCAGTCATGACTCTGAGTCACCCTGAGCTTTCTGGCTGCGTCTTGTTCGTCCATTGGTCCATCGAGGTCTCCAGAGAGGGCAGAGTCACTCCAAAGATCGAGCTGCTGACAAAGATCCCTGAGAAAGcgcTGCGGTTGTTTCCCTCTCAGGCTGTCAGTGGCGCTGCTGAGGCCTTTCAGAGCCTGCTGAGAATTCTGGGACCTGAAGCCGCTGTGGAGTCGGTCATCATGGCGGTCAGCCTTTCACAGGACACATAACTCACTTTTTCATGTATTATAGGTTAACATGTCCAAACTGAGCTATAGTACAAATAAAGGAAACTCACAGCGATGGCTTAGTCTCTTAGAAATCTTTATTCAATAGAAAGAGCATGACCGTGACGGTTTTAACAGCAGTGCTCGTTGGTCAAAatctacaaaaataaataatttaaatacaaaatgccAAA

Function

symbol description
cenpp Predicted to act upstream of or within CENP-A containing nucleosome assembly. Predicted to be located in chromosome, centromeric region. Predicted to be active in nucleus. Orthologous to human CENPP (centromere protein P).

NR:

description
PREDICTED: centromere protein P

GO: NA

KEGG:

id description
K11508 CENPP; centromere protein P

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798289.1 True 1308 mRNA 0.49 10 29485167 29595866

Neighbor

gene id symbol gene type direction distance location
c4h6orf89 clg5h6orf89,LOC103369827,LOC104961369,LOC104933301,LOC101474837,LOC102304616 coding upstream 277398 29200840 ~ 29207769 (+)
st3gal8 NA coding upstream 498579 28950477 ~ 28986588 (+)
LOC120557450 NA coding upstream 535840 28925722 ~ 28949327 (+)
rem1 rem1 coding upstream 569519 28904998 ~ 28915648 (+)
pnp4a LOC103367714,LOC101478937,LOC106510859 coding upstream 593807 28884576 ~ 28891360 (+)
zgc:153675 LOC104941726,LOC100706129,LOC106954467,LOC103130791,LOC107080719,LOC105920322,LOC101469258,LOC103464637 coding downstream 34233 29630099 ~ 29636640 (+)
hgh1 hgh1 coding downstream 43740 29639606 ~ 29657185 (+)
nisch NA coding downstream 74603 29670469 ~ 29717340 (+)
stab1 NA coding downstream 129646 29725512 ~ 29837466 (+)
LOC120557186 NA coding downstream 376627 29972493 ~ 29975991 (+)
LOC120557726 NA non-coding upstream 18505 29464818 ~ 29466662 (+)
G42453 LOC104927822 non-coding upstream 193422 29256755 ~ 29291745 (+)
G42441 NA non-coding upstream 256847 29225774 ~ 29228320 (+)
G42426 NA non-coding upstream 297453 29186974 ~ 29187714 (+)
G42428 NA non-coding upstream 298246 29186433 ~ 29186921 (+)
G42536 NA non-coding downstream 65340 29661206 ~ 29661426 (+)
G42655 pdhb non-coding downstream 322897 29918763 ~ 29984988 (+)
G42672 NA non-coding downstream 396057 29991923 ~ 29994778 (+)
G42674 NA non-coding downstream 406807 30002673 ~ 30005924 (+)
G42675 NA non-coding downstream 413171 30009037 ~ 30010008 (+)
G42449 NA other upstream 242914 29240413 ~ 29242253 (+)
ephb2b LOC104917933,LOC103376520 other upstream 1661907 27670963 ~ 27823260 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other upstream 2720430 26652851 ~ 26764737 (+)
G41850 rps10,LOC102793608 other upstream 2936368 26542507 ~ 26548799 (+)
G41825 NA other upstream 3211852 26268602 ~ 26273315 (+)
ergic3 ergic3,LOC102788871 other downstream 513669 30109535 ~ 30135834 (+)
G43045 NA other downstream 2864266 32460132 ~ 32460863 (+)
G43051 LOC102201960 other downstream 2874929 32470795 ~ 32471605 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other downstream 3442068 33037934 ~ 33041311 (+)
G43277 NA other downstream 3591872 33187738 ~ 33212318 (+)

Expression


Co-expression Network