rft1 (rft1)



Basic Information


Item Value
gene id rft1
gene name rft1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16035974 ~ 16039274 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039798370.1
CGTAACGTGTTTCCGTACAATGTGTACGGAAGTCTTACTGCTACTTCAATGGCTACTTCTCCTAGCTTTGCTGCTTGACAATCTCACACTTTTACATGAGCAATAAGGCGCTATTGTTATCGGGTTTCAGGCAGCAACCCTGAGGGTTTTACAGTATGACTCTATAATGAATTTCCTTAATAGAAAGCAGCGGAAACGTTGTCAAATTCACGCTTGACCAAGATTTCCAACGAGTCAGAGGAAGTCCAAAATGAGTACTCAGGATGTACTGAAGAATGCATCTACTCTAGCATCGTACAATGTGTTgctacagGTGATGTTCCGTGTCCTCACCTTTTTGTTGAACGCTTTCACACTTCGGTTTGTGTCCAAGGAGCTGATTGGTGTTGTCAATGTCAGGCTTACACTGCTGTACTCCACATTAGTGTTTTTATCCAGAGAAGCTTTCCGGAGAGCCTGTCTTAGCGGGGTATCTGGGACGAACCACAGCTGGAGACAAGTTATCAACCTGCTATGGCTGACGTTGCCTCTGGGTGTGTTATGGGCAGCCCTGCTGgtctgtgtgtggctgtggctCCTGGAGGTCCCAGACCCCCTGACTGTCCCTTACTATGGCCCTGCTGTAGTGTTGTTTGCTTTGTCAGGAGTGCAGGAGCTCCTGGCTGAGCCCCTCTGGGTCCTGGCTCAAGCTCACATGTTTGTCCGACTGAAGGTGGTCGCTGAGAGCTTAGCAATGATTGCCAAGTGCAGTATGACAGTGGTGCTGGTGGTGTTCGCCTGTGAATGGGGCCTTTACATCTTCTCTGCTGCTCATTTGGTGTACACAGGATTCCTGGTGCTGTGCTACGCTGTTTACTTCATTCGTTTCTTGGGCTCTCAAGAGGCAGCCAAGAAGGGTTTTCCTCTGCACCGTGTTGGCGATCTCTTGCCCTGTAGAGCTGATGGAGAGCCGCTGGTTGACTGGACTCTGGCCCGGCTCACATGGAGCTTCTTCAAGCAGTCCTTCCTGAAGCAGATCCTGACAGAGGGTGAGCGGTACGTCATGACCTTCTTGAACGTCCTCAGCTTTGGAGACCAGGGAGTTTATGATATTGTCAATAATCTGGGCTCCATGGTGGCTCGCTTCATCTTCTTGCCCATCGAGGAAAGCTTCTATATCTTCTTTGCAAAAGTGCTGGAGCGAGGGCGTGATGTCAAAAGTCAGAAACAGGAAGATGTTGCCATTGCAGCAGAGGTCCTAGAGTGTCTGCTGAAACTGGTGCTGGTGGTTGGTCTGATTATCTCAGTGTTTGGCTACGCCTACTCTTACTTGGCTCTGGACATTTATGGCGGCTCTCTACTTAGCAGTGGGGcagGACCCACTTTGCTGCGATGCTACAGCTGCTATGTTCTCTTGCTTGCTGTAAATGGTGTAACCGAGTGCTTTGTATTTGCTGCCATGAGCCAAAAAGAGGTTGACAGGTATAACTTGGTGATGCTggctctgtctttgtctttcctGTTCCTGTCCTACATGCTGACGTGGTGGGCTGGTGGTGTGGGCTTCATACTGGCAAACTGCCTTAACATGGGCCTCCGCATTTTGCACAGCCTGCTTTACATACGCCGCTACTTCCAGTCCAGTCAATGGAAACCTCTGCGAGGCCTGTTGCCCTCCCCACTCCTACTACTGGCACTTGCTGTCAGTGCCGTTGTCACAGCGCTGTCTGAGGGTGTGTTCTGCTGTGACAGCGGCTGGTTGCTAAGGCTGGTCCATATCGCCGTAGGAGCAGCATGTCTGCTCGGTGTGTTTGTGGCTGTTCTTCTCACAGAGACTCAGCTTATTCAGTTTGTGAGAACTCAGCTCATGCCCCAATACAGAAAGAAACACACTTGAATTGTACTGGAAATTGCCATATTGGACTGGAAGAAAGCTCTACTACAAAAAGTTCTAACAAGAGCTGCTGACTGACAGTTACTGTGTGAAAACGAGGGAacaacttttttaaattaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggctgatgTGTTTTCACTGGATCATTCCTGTGTTGGCTCATATAAGTATGAACAAACATGTCATGATTGTTTTGGGATCcgataaagaaataaatgtatttttaagaaaCGGATGAATTTGTTACAGGACAATAGATTGTCCTACACAGTAAAGCAAGACTACTAATTCA

Function


symbol description
rft1 Predicted to be involved in glycolipid translocation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation In. Orthologous to human RFT1 (RFT1 homolog).

NR:

description
protein RFT1 homolog

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005319 lipid transporter activity molecular_function

KEGG:

id description
K06316 RFT1; oligosaccharide translocation protein RFT1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039798370.1 True 2281 mRNA 0.48 10 16035974 16039274

Neighbor


gene id symbol gene type direction distance location
prkcda prkcd,LOC104933455 coding upstream 1012 16016979 ~ 16034962 (+)
LOC120558102 LOC104943766 coding upstream 24468 15991734 ~ 16011506 (+)
tatdn2 NA coding upstream 75694 15948449 ~ 15960280 (+)
vhl vhl,LOC104941408 coding upstream 90422 15942764 ~ 15945552 (+)
pa2g4a pa2g4,LOC104933448,LOC102793326 coding upstream 122355 15903500 ~ 15913619 (+)
mustn1a mustn1 coding downstream 539 16039813 ~ 16041213 (+)
arpc4 arpc4,LOC103358720,LOC100696600,LOC103385929,LOC107721188 coding downstream 122686 16161960 ~ 16167138 (+)
emc3 emc3,LOC101173295,LOC101079695 coding downstream 523591 16562865 ~ 16566395 (+)
usp4 usp4,LOC102796025 coding downstream 527427 16566701 ~ 16578215 (+)
fancd2 fancd2 coding downstream 545138 16584412 ~ 16605415 (+)
G38966 NA non-coding upstream 50878 15984624 ~ 15985096 (+)
LOC120557201 NA non-coding upstream 114352 15919385 ~ 15921622 (+)
G38948 NA non-coding upstream 121073 15914539 ~ 15914901 (+)
G38885 LOC104942130 non-coding upstream 273659 15760792 ~ 15762315 (+)
G38860 NA non-coding upstream 306574 15727979 ~ 15729400 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding downstream 156105 16195379 ~ 16195784 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding downstream 195740 16235014 ~ 16251725 (+)
G39113 NA non-coding downstream 464164 16503438 ~ 16510185 (+)
G39134 NA non-coding downstream 513410 16552684 ~ 16556205 (+)
G39143 NA non-coding downstream 539811 16579085 ~ 16579722 (+)
ccdc174 ccdc174 other upstream 61737 15965402 ~ 15974237 (+)
crbn crbn,LOC102793823 other upstream 98877 15923321 ~ 15937097 (+)
G38834 NA other upstream 388123 15645511 ~ 15647851 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 1161515 14865059 ~ 14874459 (+)
G38517 NA other upstream 1219538 14808352 ~ 14816436 (+)
eefsec eefsec,LOC102787825 other downstream 10404 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 109851 16149125 ~ 16158362 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 393964 16433238 ~ 16435229 (+)
G39116 NA other downstream 478262 16517536 ~ 16543580 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 925343 16964617 ~ 17046696 (+)

Expression



Co-expression Network