LOC120557769 (LOC106958509,LOC107723971,LOC107690788,LOC107671222,LOC107579420)


Basic Information

Item Value
gene id LOC120557769
gene name LOC106958509,LOC107723971,LOC107690788,LOC107671222,LOC107579420
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 4524321 ~ 4525508 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798373.1
TCTAACGATCCAACATCGGCTGATCTCAGAATGAGTGGAAGAGGCAAGGGCGGCAAAGGACTCGGTAAAGGGGGCGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGCGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGATGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTCTACGCTCTGAAGAGGCAGGGCCGCACCCTGTATGGCTTCGGAGGTTAAACCTGATCCGAAGAAACTACAACAACACAacggctcttttaagagccaccCACTTCATCTAAAGCTCCTTTTCCTATTGTCATAATGACAAAATTATTTCACAGTAGCCTAGGCATATTATAAAATATGTGCCAGTATGATACatgctatactgtatatttttacaCCGTAGTTGGTGCCAAAAGTGCATGTAGTCCATGGTTCAGTATAAAGTGCTGGTCTATAGCTGTGTAGCCTACAGCACCTGAAAGCTGGGAACCTGAAACTTAATGTGGGATGCAGCTCAGTGTCAAGTCACCAGTCagtaaaaaacattgttttggtAAGGTGcagattaaaatgttaaaagtgtACAACAGTTTAGGACATTACGTAAATGTGTGATTGATCTTCCTAGCAAATGTGGGCGTTGATCCCGGATTAGGTGCTAAATGAACCCATTTTGTGGCACATTAGTACACTGAGACTTTGAGGAACACCATAGAAAACCAAATAGAAAAGTTCTCTGTCATGTGCACAACAATACTGACAACCTATTTTGTTGGCAATGAAAATGTTAAGTCTCAGGCATCTCCAACAATGCTCAATATCTAACTGTATAGGAAACTTCTTCAAAATCTTTAAGACAACAGAATAATGTACTGCAAATTAAGATACAGGACTAAATATTaacaaattaaatacaaaaaagggaaattacataataaatatatttgtgtatttattagaTGATTGAAGAAGTGTATATATGCATGATGAGAAGCATGAGGAGTTCAATGGCCTGTGGGATGAAGCGGTGCCTGAGCCTGGAGGTGCAGTTCCTAATAGATTCATGTGGATTAAATG

Function

NR:

description
PREDICTED: transcriptional regulatory protein AlgP-like

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0045653 negative regulation of megakaryocyte differentiation biological_process
GO:0000723 telomere maintenance biological_process
GO:0000786 nucleosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11254 H4; histone H4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798373.1 True 1188 mRNA 0.43 1 4524321 4525508

Neighbor

gene id symbol gene type direction distance location
LOC120558177 LOC100698470,LOC102194894,LOC101473847,LOC102310675,LOC102787480,LOC104957620 coding upstream 497 4510543 ~ 4523824 (+)
LOC120556766 LOC104935308,LOC104932967 coding upstream 25227 4498585 ~ 4499094 (+)
LOC120556767 NA coding upstream 26484 4496804 ~ 4497837 (+)
LOC120556803 NA coding upstream 31153 4492593 ~ 4493168 (+)
LOC120556802 NA coding upstream 35726 4487602 ~ 4488595 (+)
LOC120558095 NA coding downstream 11963 4537471 ~ 4539747 (+)
LOC120557506 NA coding downstream 31253 4556761 ~ 4557775 (+)
LOC120557505 LOC104935308,LOC104932967 coding downstream 33067 4558575 ~ 4559468 (+)
LOC120557502 LOC105888650,LOC101068541,LOC107388332,LOC103395674,LOC105896821 coding downstream 44402 4569910 ~ 4571535 (+)
LOC120557508 NA coding downstream 58821 4584329 ~ 4585357 (+)
G35834 NA non-coding upstream 154100 4369919 ~ 4370221 (+)
G35833 NA non-coding upstream 155271 4368691 ~ 4369050 (+)
G35739 NA non-coding upstream 694380 3772611 ~ 3829941 (+)
G35741 NA non-coding upstream 732348 3790004 ~ 3791973 (+)
G35737 NA non-coding upstream 755933 3767852 ~ 3768388 (+)
G35925 LOC104957620,LOC100698470,LOC102194894,LOC101473847,LOC102310675,LOC102787480 non-coding downstream 79952 4605460 ~ 4610060 (+)
G35941 NA non-coding downstream 85030 4610538 ~ 4613004 (+)
G35942 NA non-coding downstream 90385 4615893 ~ 4617397 (+)
G35958 NA non-coding downstream 165547 4691055 ~ 4694565 (+)
G36022 NA non-coding downstream 274463 4799971 ~ 4800984 (+)
G35791 LOC101072424,LOC104921976 other upstream 574193 3948834 ~ 3950128 (+)
epha8 epha8,LOC102791453 other upstream 934709 3453600 ~ 3589612 (+)
G35618 NA other upstream 1165501 3244231 ~ 3358820 (+)
G35578 NA other upstream 1507196 2930924 ~ 3017125 (+)
G35534 NA other upstream 1776549 2747220 ~ 2747772 (+)
LOC120557928 NA other downstream 4325 4529833 ~ 4532862 (+)
cdk5rap1 cdk5rap1 other downstream 386191 4911699 ~ 4934164 (+)
G36156 LOC103374102 other downstream 1395416 5920924 ~ 5924400 (+)
rybpb rybp other downstream 1509564 6035072 ~ 6055216 (+)
prok2 prok2,LOC103355444 other downstream 1579105 6104613 ~ 6107152 (+)

Expression


Co-expression Network