tafa4b (LOC108244092,LOC101483849,LOC102775681)


Basic Information

Item Value
gene id tafa4b
gene name LOC108244092,LOC101483849,LOC102775681
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8832264 ~ 8872166 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798377.1
AGGAGCGACGGGAGCGCAACTATCACTCCTGCATCACTTTACCATCACTCTCATCAGTATCGCTCCGGCGACTGTAACGCCTCTGTGTGACAGTCGCGCGCAGGGGGATGAACTTGTGTGGAGTGTTCGCCAAAAACATCAGCCCGTTGTGTGTCTTTGGGGGATTTACGCACTTTTGATGACTTTCTCCTCAGTGTGGTTTTGAGATTTTACGCGGCAAGATCATGGCACGTTGGGGCACATCGCTATTGCGCGAGCTCTGTTTTCTCACCCGGCTCCGGAGGGCTGGTTCTCTGGTGAAGCAGTAGCCCTCCTCGCCCCTgcttcagtgtgtttgtgcgcgGGCTCCGGGAACTGGACATGAGGCTCAAAATGATTGCCCCGTTTAGTGGAAAACAAAATCAGTGGAGTTGAAGCAGAAAGTGGCAAAGCTCTCTACTATCTCAGCTGGATCCTTTACAATTCCCTGTGATCATGCCATCAAGTTGATAGATTTGGGGGCTTCTTCTGTTTgaggtgaggaagaggagaagcaggaggaagaagaggaggaagagagggtgaGGGCTGAGGCGTGAGTGAATGCAGCCATGGCCTGTACACCCTGTCCATAGAGAAACTACTAAGCGGAAGACAGATCAAAGAAGATAGAGACGACCAACAGGATGAAACTGTGGGGGAGGTCAGCTTGGCCTGTGCAGGTGGCCTTCCTCGTTGCCTTGGTGATGCTCTGCGTCGACCCAGTGTCTGCTGGCAGCCGTAACCATCGGGGACCGACAGtctcataCCAGGTGAAGCAGGGGACATGTGAGGTGGTGGCCATCCATCGCTGCTGTAATAAGAATAAGATTGAGGAGCGCTCTCAAACCGTCAAGTGTTCCTGTTTCCCTGGGCAGGTCGCTGGCACCACaagagccagaccctcctgtgTGGAAGCCTCCATCGTAGCCCAGAAGTGGTGGTGCCAGATGCATCCATGTATGGACGGAGAGGAGTGTAAGGTCTTGCCTGACCTGACTGGCTGGTCCTGCAGCACTGGCAACAAAGTCAAAACCACCAAGgtcACACGATAGCAAGAGAGCCACTGAGCGACGAGGAAACCTGAAACTCTCCATGTGGAAAGGATAGATGACTCACACATATTTACCGCACAATGGGGAAAATATCAAGGAAAGGACTTCTGTCAGGCCATCCATCATAAAACAATGGGATAAAATGTACTCATCACAAACTATGTACACTTGGCTACATGGAGCCACACagcatacacagtatatatgcTGGTTGTTGAGACCAATGGACTTCAATCATGGACAACCAGGGTAAATCTGGACACAAATGGACTCTTGTTTTCCTATAATGGAAAAAATGTGGATTGATAAAAAAGGTTGATTTCAAAGAGTTATTAAGCATTTCAAAGTATATATTTCAACAAAGCATTTGTGGATGAGTGTAAGATGTGAACTAAAAGCTGTGCTTTAGGTGCTGCTGGACACAGTCCAGACCTGTTGTCAATATGTAGAAGTTATACTGGAGACAGTGGAGATGATTTGGAAGAAATGAAAGAGATAGCAGCTCATAACTAGCAAATAGCAAATTAGCATCCAATTGCTCTTGTGGGTCAAGTCACTATCATGAAGACTGTTTTACGGGAGTCATTTTGCAGTTCTAATTAGGAATTGCAGCGTAGGATCATAACAACATGTTAAAAATTCATGTAAGATATTTGCACTAGTTGAAACCAtttggaaatgttttgtttttctagaTATCTCCCAATATTTTGCTGTGGATGTCACATGAAATTGAAGGTGAGCATTTTGTAAAATGTCTGACActcaaagtatatatatatatatatatatatatatatatatatata

Function

NR:

description
PREDICTED: protein FAM19A4-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798377.1 True 1882 mRNA 0.46 6 8832264 8872166

Neighbor

gene id symbol gene type direction distance location
eogt eogt coding upstream 4885 8810821 ~ 8827379 (+)
trnae-cuc_13 NA coding upstream 9533 8822660 ~ 8822731 (+)
trnae-cuc_12 NA coding upstream 9956 8822237 ~ 8822308 (+)
trnar-acg_14 NA coding upstream 15867 8816325 ~ 8816397 (+)
tmf1 tmf1 coding upstream 21870 8798373 ~ 8810394 (+)
suclg2 suclg2 coding downstream 232170 9104336 ~ 9229981 (+)
lrig1 lrig1 coding downstream 488025 9360191 ~ 9398603 (+)
magi1b magi1 coding downstream 623118 9495284 ~ 9650337 (+)
adamts9 adamts9 coding downstream 830845 9703011 ~ 9754498 (+)
psmd6 psmd6 coding downstream 1007862 9880028 ~ 9886125 (+)
G36900 NA non-coding upstream 171987 8624721 ~ 8660277 (+)
G36890 NA non-coding upstream 219277 8612296 ~ 8612987 (+)
G36887 LOC101487045 non-coding upstream 221176 8610361 ~ 8611088 (+)
G36836 NA non-coding upstream 386673 8445392 ~ 8445591 (+)
G36827 LOC100705312,LOC102203484,LOC101465335,LOC104933013 non-coding upstream 406733 8422173 ~ 8425531 (+)
LOC120558080 NA non-coding downstream 13607 8885773 ~ 8940038 (+)
G36988 NA non-coding downstream 167297 9039463 ~ 9039769 (+)
G36991 NA non-coding downstream 357914 9230080 ~ 9230363 (+)
G36990 NA non-coding downstream 358298 9230464 ~ 9230954 (+)
G37023 NA non-coding downstream 487338 9359504 ~ 9410661 (+)
G36744 NA other upstream 603544 8227762 ~ 8228720 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 1525921 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 1559896 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 1645050 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 2193741 6635280 ~ 6638523 (+)
prickle2b prickle2 other downstream 888067 9760233 ~ 9856656 (+)
G37197 NA other downstream 1433021 10305187 ~ 10309996 (+)
glrx glrx other downstream 1515742 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 2125064 10997230 ~ 11012909 (+)
G37525 evc2 other downstream 2479912 11352078 ~ 11352387 (+)

Expression


Co-expression Network