LOC120557775 (LOC100711209)


Basic Information

Item Value
gene id LOC120557775
gene name LOC100711209
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 18732099 ~ 18737859 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798380.1
CAGTGCGAAAGTCCAATCTGACAATCCAAATCCTAACTTGCAAAGATGGAGAACGGCACAGAGGGCAAGAACTTCTACATACCCCTGAACAACCGGACAGGGCTTGTAAGGAATCCTTTTGAGTATCCACAGTATTATTTAGCAGATCCATGGTTATTCAAACTGCTGGCTGCCTACATGTTCATCCTAATGTGCTCTGGCTTCCTCATCAACTTTCTGACACTGTTTGTCACAGCTCAAAACAAGAAGCTCCGGCAACCTCTTAACTTCATCCTAGTCAACCTGGCTGTGGCTGGACTGATCATGGTCTGCTTTGGATTTACAGTCACCTTTTATACTTCCCTAGCAGGCTATTTTGCCTTGGGACCCATGAGCTGTGCAATTGAAGGATTCATGGCTACACTTGGAGGTCAAGTGTCTCTGTGGTCTCTTGTGGTTCTAGCAGTTGAGAGATACATTGTGGTCTGCAAACCCATGGGCAGTTTCAAATTTACAGCCACCAATGCTGCAACAGGTTGTGCATTCACCTGGATTATGGCTTCCACCTGTGCTGTCCCTCCTCTCGTTGGCTGGTCAAGGTTCATTCCTGAGGGTATTCAGGTTTCCTGTGGACCTGACTACTACACTCTGGCCCCAGGCTACAACAACGAATCATATGTCCTTTACATGTTTAGCTGCCACTTCTGTGTTCCCGTTTTCATCCTCTTCTTCAGTTATGGAAACTTAGTGTGGAAAGTGAAGGCGGCCGCAGCCAAGCAGCAGGACTCTGTATCTACCCAAAAGGCTGAGAGAGAAGTGACACGTATGTGCATCCTGATGGTGTTGGGCTTCCTAGTGGCATGGACTCCATATGCCAGCGTTGCTGCCTGGATCTTCTTCAATAAGGGAGCTGCATTCTCAGCTACAACCATGGCTGTCCCTGCCTTCTTCTCAAAGAGCTCAGCATTGTTCAATCCTGTTATCTATGTGTTGATGAACAAACAGTTCCGTAATTGCATGCTGAGCACTATTGGGATGAGTGGCATGGTGGAGGATGAGACCTCAGTATCAACCAGTCAGACAGAAGTGTCCTCTGCTTCCTAAACACAGAAGAGTCTCAACAACTCTAATGGATTTTATTTGTCCTGGTAAAAATAAATCATCAATTgctcatag
>XM_039798381.1
CAGTGCGAAAGTCCAATCTGACAATCCAAATCCTAACTTGCAAAGATGGAGAACGGCACAGAGGGCAAGAACTTCTACATACCCCTGAACAACCGGACAGGGCTTCTCAAAACAAGAAGCTCCGGCAACCTCTTAACTTCATCCTAGTCAACCTGGCTGTGGCTGGACTGATCATGGTCTGCTTTGGATTTACAGTCACCTTTTATACTTCCCTAGCAGGCTATTTTGCCTTGGGACCCATGAGCTGTGCAATTGAAGGATTCATGGCTACACTTGGAGGTCAAGTGTCTCTGTGGTCTCTTGTGGTTCTAGCAGTTGAGAGATACATTGTGGTCTGCAAACCCATGGGCAGTTTCAAATTTACAGCCACCAATGCTGCAACAGGTTGTGCATTCACCTGGATTATGGCTTCCACCTGTGCTGTCCCTCCTCTCGTTGGCTGGTCAAGGTTCATTCCTGAGGGTATTCAGGTTTCCTGTGGACCTGACTACTACACTCTGGCCCCAGGCTACAACAACGAATCATATGTCCTTTACATGTTTAGCTGCCACTTCTGTGTTCCCGTTTTCATCCTCTTCTTCAGTTATGGAAACTTAGTGTGGAAAGTGAAGGCGGCCGCAGCCAAGCAGCAGGACTCTGTATCTACCCAAAAGGCTGAGAGAGAAGTGACACGTATGTGCATCCTGATGGTGTTGGGCTTCCTAGTGGCATGGACTCCATATGCCAGCGTTGCTGCCTGGATCTTCTTCAATAAGGGAGCTGCATTCTCAGCTACAACCATGGCTGTCCCTGCCTTCTTCTCAAAGAGCTCAGCATTGTTCAATCCTGTTATCTATGTGTTGATGAACAAACAGTTCCGTAATTGCATGCTGAGCACTATTGGGATGAGTGGCATGGTGGAGGATGAGACCTCAGTATCAACCAGTCAGACAGAAGTGTCCTCTGCTTCCTAAACACAGAAGAGTCTCAACAACTCTAATGGATTTTATTTGTCCTGGTAAAAATAAATCATCAATTgctcatag

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798380.1 True 1155 mRNA 0.46 5 18732099 18737859
XM_039798381.1 False 1025 mRNA 0.47 6 18732099 18737859

Neighbor

gene id symbol gene type direction distance location
LOC120557639 LOC101468781,LOC102197536,LOC100705767,LOC102779027 coding upstream 9868 18712940 ~ 18722231 (+)
fkbp5 fkbp5,LOC102778077,LOC101485431 coding upstream 67514 18651305 ~ 18664585 (+)
LOC120556859 NA coding upstream 86982 18639859 ~ 18645117 (+)
trub2 trub2,LOC102777509 coding upstream 116142 18611623 ~ 18615957 (+)
tgfa tgfa,LOC102305789,LOC107385163 coding upstream 133724 18593164 ~ 18598375 (+)
cadpsb cadps,LOC102781224 coding downstream 33707 18771566 ~ 18835468 (+)
cfap20dc LOC104955207,LOC103360140 coding downstream 275333 19013192 ~ 19053017 (+)
si:dkeyp-67f1.2 NA coding downstream 322502 19060361 ~ 19062911 (+)
LOC120556926 fam107a coding downstream 325750 19063609 ~ 19069974 (+)
pbrm1l LOC103360180,LOC102204824,LOC102785351,LOC101477452 coding downstream 358254 19096113 ~ 19109230 (+)
G39935 NA non-coding upstream 128999 18601716 ~ 18603100 (+)
G39934 NA non-coding upstream 132870 18599024 ~ 18599229 (+)
G39927 NA non-coding upstream 157888 18573982 ~ 18574211 (+)
G39926 NA non-coding upstream 158190 18573682 ~ 18573909 (+)
G39925 NA non-coding upstream 161116 18570591 ~ 18570983 (+)
G40049 NA non-coding downstream 250585 18988444 ~ 18988684 (+)
G40064 NA non-coding downstream 316269 19054128 ~ 19058578 (+)
G40073 NA non-coding downstream 337881 19075740 ~ 19077037 (+)
G40104 LOC102787023,LOC103360233,LOC102206431,LOC101476705 non-coding downstream 430977 19168836 ~ 19169391 (+)
G40109 NA non-coding downstream 435290 19173149 ~ 19178937 (+)
LOC120557740 acy1 other upstream 505521 18215706 ~ 18226578 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other upstream 537188 18189582 ~ 18194911 (+)
wnk2 wnk2,LOC104946158 other upstream 801981 17904698 ~ 17930118 (+)
LOC120556838 NA other upstream 998088 17720441 ~ 17734011 (+)
G39581 LOC104949003,LOC103357913 other upstream 1122883 17607930 ~ 17609216 (+)
oxtrl LOC104920519,LOC103360274,LOC100702815,LOC102207462,LOC102295060 other downstream 558400 19296259 ~ 19314826 (+)
G40164 LOC103360294,LOC104965627,LOC100702547 other downstream 586970 19324829 ~ 19326625 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 687007 19424866 ~ 19426456 (+)
slc38a3b LOC103360384 other downstream 704149 19442008 ~ 19470998 (+)
LOC120557344 LOC104966310 other downstream 879322 19617181 ~ 19632519 (+)

Expression


Co-expression Network