lrrc38b (LOC108231699,LOC101063821)


Basic Information

Item Value
gene id lrrc38b
gene name LOC108231699,LOC101063821
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 27881093 ~ 27900596 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798389.1
TGAGATAAACCGTGCTAGATTCAGAGGCAGTTGTTGGATTGGCATGGCTGTGTGCAGCTCAGCACTGCCATCTACATCCATGAGGCTCCTGCCTGGACATTTGGATTCTCTCTGCACAGCAACACAGCCTTGATACGGTGCTGGACAGCGTAACAgtcagctgtgctgtgttttcacagCATGTTGCAGGGCATTGGGAGATAGAGGTAATAATAACGGGGGACAACCTTACCACACACTTGAGCGATGTTCTgtgagcctctctctctctgtctcgttTAAGACCATCAGGCTTTTCTACACAGAGACCTGGGACTAATGGAGGGATGCCATGATGTTGCTCTTTGCTTGTCATGCTTGAATCCCAGCTTCATATATCCTTTTGTGTCAGAGACCGTATTGTCTTCGTCTGTCACTGCCGCCAGATCAACCGTGGGGTAGCGTGGCGGACAGAGCCCCCTCCTCAACCCCCCTCTCCCTTGTCTGTGCCCCCGGCTTCTCATCACTCCCGGCTCGCTCGTGTCTATTTACCTCTCTTAAGCTGCCCTCCCCTCTCTGTTAAGCTCTGTATTTCTTGCTCTCCCGCTCCCTACTGCTTACTATCTCCCTCTCTTTACTCCTTCAAAGCAGACAGTGTGCTATTCTATCCAAGCAGCTTGCTACATGATCTCCTGGAAAACCGTTTTCACCACTGCTCTGCCGCCTCACAATTCCTTCGCCCTTTCAGATTTCCATCTCTACAACGGCAGGATGTTCCTTCACGAGGATTGATCCCCATTCACCCCCTTTCACTTTCCCCTTCCCCTCCCTTGTCCTAATCTCCTGCCCTCTGACCCTCACCCTCTTGTTCTCTGCCCCCACCCTTCCTCTTCTATTCGCAATTACCCCGAGCCTCTTTCCCCCGTAATTCATTTCACCCCTTGACCATGTTGCCATGCGTCTGCTGGCTCCAACGTATCCTCATCTTGCTGTCCTCTGTCTTATGGACCCGGGGGGAAAACTGCCCAGCAACCTGCATGTGCCCAGATCCTCACACTGTGGACTGCAGTGGCCGCGGGCTAACCCGTCTACCCAATGAGATCCCCTTGGATGTGCGCAGGCTGTTGCTGGCTGACAACTTGATACCCCGCATCCCCTCGGACTTCCTGGTTCTATACAGTGACTTGGTCTACCTGGACCTCCGGAACAACTCCCTCTCCCACATTGAACCGGGGACTCTCAGCACCTCTTCCAGGCTGGTCTTCTTGGACCTAGGCAGCAACAATCTGACTGAAATCCCTAAGGGGACTTTTGGGGAGTCTCGGAGCCTGATCAAGCTACGGCTGGGCAACAACCCATATCTGAGCTTGGTGAATGAGGATGCCTTCCTTGGCCTCACGTCTCTGAGAGAACTGGAACTGGAGCGTAATGCACTGTCTACTCTACATGTGGGGGCACTGAGTCAGTTGCCCTCCCTGCGGGCAGTGAGGCTAGAGGGCAACCCCTGGGTGTGCAACTGCAACTTTGCCAGCCTGTTCGCATGGCTGATGGAGAACAGCCACAAGCTTCCAAACGGGGTGGAAGGCATGGAGTGCTCCATCCCCATGGACGGCAGACGTGTGTCCCTGACCCAGCTCTCCAAGGACAGTTTCCGTGAGTGCCAGGCCACCCTGACTCTAACAGACCTGCTAATCATCATTTTCTCTGGCATCTCAGTGTCTGTGGTGGCCATTATGACAAGCTTCTTCCTGGCATCAACTGTTCATTGCTTCCAGCGCTGGAGTAAAGGCACCAagggggatgaggaggagagtgaggaGTGAGAAGGGTTTCATTTTAAGGACCCTGTGTGGTCCTGGTACTTCAAACAATGAGAGGACACCACAGACAGTGTGTGCTACATGTGACAAAATTTCATGTTGCCTCCTCCCTGGAGAAAATCCAACTGTTTAAACGGTAGGATCTTGCCCTGGTACAGTTGCAGTTGTTTTCTTTGCACATGAAATATGGTAACAAAGGACATTCCCAAGGAATGAGTCCCAATAAAAATTAGTGTGTGCCCTGCTCCACTTGCAAAATTATATTATAGAGATCGTATTTTTGGCTGTGAGAGCATGTGGTCATCTTTTATGGCTGCTGGCTCTTGGTTCAATGTTGTAGTAGGCCTACATAAATAAAGTGAGGCTAACACCTTTATAATGAGAGAGTAaaagatttaaaagaaaagtgttGCTGCAGCGCTGTCACATTAGTAGTAGACAAGGCGATAACTTCGCAACATGTAATCACATCAGCCTGAAATCCTGTAAAGTTAGGGTAAACTTTTAGATGATTTTCATGGAGTTTATCTGTGTAGGGCAGAATCTGTGATCCCATAAAGAAAGGATGTCATACCGACCAATGACCTCAGTAATTAACTGCCTATACCATGATATGCTGGCATATCCTGCCATttacaatgtcttttttttttttggacagccTCACTCACATTCAAAAATGGCTCACAACTACTGTTGGCGAATACTGTTGTTCCTTCTGCACGTAAAATTAGACAGTGGCAAAGGGTGTCAGTCAAACAGGAAGGATTTGGACAATGGCGAGGTGTTTCTGTAGGTAGCTGATGTGTTGTAGGCAGGAACAATTTCCAGTAGGTCTACACATTCTTCTAGCAGTATATTCATTATATAATCACAAATTGATGTACAATAGAAAACAATGTACAGTCAACCAAATATAAATCAAGAGGATATACTGTATGCTCCTTAGAATTGATAACTCTGACCTGTGTAGAAAGATAAAATAACAGTATACTCTTGAAAATTATGACAAATACGGTATTAAAATAGAATCTACGTAGTAGTAACTATTGTGTCAAATAATGCACTTTATATGGTGAAGCTAATTTTGGCAAGCCCCTAATTATACTATGTAGACTGGTTTTGTCTTCATCTGCCAAAGATTAGGTGAAGGAGAGATTGCATATGGACTTTGTTGTGGTAGGGATAGCTCCTTAAAAGCAGGCAGCACTATAGCCAAATCACTCTTTGTATACTATACTTAAACAGTTACGGTCTCCAAAGATTATCATTTACCTCTAGAACCAGCTGTCTTACATTGCTTCATACATGGCAGTCTTCAACCTCTGTTATCACAGTCACTTCAGAACaaaaagttattcactgtccaAGAGGTTTGTGTCTTTAGGAATAAAtagatgttttttgttttgtttaagatAACCAGAATTGATACATCATGGACTCTCAGTCagcttatttttcttttactaaacaTTTTCTGATGTATTATAGTAAAGCTGCTGATTTAATATCCTGGAAAAGTCTCACATCAAAACGTATTGTATCAACAGCATCTGCATTCACAAGAGCGACAGTACAGTCAAATCCAAATTTAATAAAGTAGCATCCTGAATATTATGGGTTTCTGTTTGTTATTTGAATCATGTATGTTTAAATCCTCCATTAGGATTTGGAATGCTCAAAACtggagtattattattataaaacaatatatttgtattttcccCAGCGCTAAGCTATGTTGCTTTTGCTTCTTCTTGTAAGGCATGAATAATGCAGCGAAATTGAGATATGAAccagaaaaaaatgtcaagCTTTTAAATGCAAACAAGCAGAGGATAGACAAAGAGACATGAGCAAATAGTTATAATTTCTGTGTggttaataaaagaaaaaaagaattgcaAATACCTGTGTCCCTTAAGAACAAGTCATAACCCTGAATGTGCAGCATTGGTAAGCACATTTTTgcaacaatgacaataaataaatatagccttagttattaattttttgttattttttcatttgcatTAGCATCAATAAAAGCACAAAGATTTCACAGGAAACTTATGTGATTCTAGTACCATCCTGTATTGTCACGGtatgtttttattaatgtgtATTGTCACGTTATGTTATAAAATGCCACATCCTTATAAACAGTGTAAGATTTGTATTGTATGGGTGTCGTGTTTTTGCCAGAATTCAAATGCCTACTGATTTGAATTGAAGACACATTCATTTGATTTTGAGGACAAATTCAAGGCACATGCCTATCAGAAATTAATATCCATCTATAACAGCCAATTGACCTTTCGCTAAACCCCTCCTCTGAACAGCAATTATGCAATAGCTTGGTGTATAACTAGGCACGTCAGCAGGCCTGTCCAGCTTTGGATTTCTACCCATGTTGAACCATTGTGTGTGAAGAGCGATACTCGGTATCTCAAGGGTTTGGAGGTTGGTTTGTTTTGCAGTAGTCTTCAAAAACGCTAAAACATCACAAATGTGTGAGGAATGGATTTGACTTTGTCTTTATCTGCACTGAACGTAACCTGCAAACATAAGCACGTCCAGCTAACTAGCTTACTACAGTAGAAACCAAATGTTAATTCCAAAGGGAGAGTGTCTATGTtgcctcagccctatgttctctcagccctatgttcactCAGCTctgtgttccctcagccctatgttccctcagccctatatTCCCTCAGCCCTGTGTTCTCTCAGCGCTATGTTCCCTcatccctatgttccctcagccctatgttccctcagccctatgttcccccaGCCCAGTGTTCCCTTAGCCCAGTGTTctctcagccctatgttccctcatccctatgttccctcagctctatgttccctcagccctaatCCTAACCCCTAAACCAAGATGATTAGTATTAGGCCTACTGCAGCAATGAATACAAGGTCACAtatccaaaacataaaatatgacCGGGGGTGTGTTGATGGAGGGTATGTGGCCtcagggaacatagggccttaTTTTGTGGCCtcagggaacatagggccttattttgattgggggggggggattcatAAAAATGAGGGAACAttgggctgagggaacattggGATGACCCCCTTCCAAAAGTAGTGGGCATGTTAGCTTACTCCATTATTTTGTGAGGTTACAGGTTACATTAAAGACATACCCGTTCAGGACTGACGCATCCAAAGTTTGGGAGCCAAGATCCTACTATATCAGATCACTTTAAAGTAATGATAGCAGCTCAGTCTTGCTCTGTGTTTGTTTTGGGGAAGTTGACATTCCAGCAACTACAGACAAACTTGTGTTAGATCGATGCAAGGATGACAGTAAAGCATATGAAAAATAAAGGAATAGCCTAAATCTCACCACTGTAGGCTATTGCTTGCTCAGGTATGTTTTTCTATAGTAAGCAACCAAACAGTTCAACGGTTCTCTTTAGAATAAATACCATTTTAATTACAATTTCATTACAATACTATGGGGCTAACTAGCTACcctaaaatacacaaacaatgttgtttctttgtttacATGTCCTGTACATTGATCAACAACTGGTGAGCCTGCTGACGTCTGGTAAATgtagctttagcctcagtcttTTAGCATATCATGCCCGTCAAGTACATATTTAAGACCTTTTAACATGGTTCTCGTTTTAAAACGTGTCAGACGGGAACATAAAAATGTCAGCTGGAGACAGACTTCTCAGCTGACTCCAGTAGCTTTAGCATTATCttacattagctagctacacttcaTCATCATTTTAGGTGACAAAATCCATGGTCTTCAGCCAGACATGGGAAGCATGCTTCTATTTACTTCTGCGTAGAATTGAAgacccagtttttcaaaaggtAGGCCTACCGCAAATTACATGGTAAGTCTGCCATTGTTATCTCTGAAACTGCACGTGTGCAGTGCGAGAATGGAAAGCTTTCCGCAACAACAGTGAGTAAGAAGGGCGGGGTTTAGCGAATGGTTAATTCTCACATTAGATACAGTCTTAAAGGGTAATGCCAATGAATTTCATATTTTTAAGTCTGCCATTCTTATTATCACAGTCACCTAATATTGCTCATAGCCAGAGTAAAGGTGCCCCACAGTTATGTTCACATGGAAAGACTGAAGGTATGGAGGGGACATTTAGGAACTCAATTCCCAACGACAAGTATAAAACCATTTTGATTGTGTTGGCATGAGAGGAGTCAGGTTCTCATGttcataaaacaaaaacatttggaaGCTTAATACCACAAGAAAAGCTAAAGTGGATTAATTAGGTTGGGTGGTTTACTGCTTCACGTGAGCTTTCTTAACTGATATCTGAAGGTGCAGATCTTTAGTTAAGTAATCAGAGGGAGACTTTTTATACATATCATTATTTCCAACTACTGTGTAGTTACTGTATATTAACAAATTATTATGTTAGCTTAGCTGTTAGCTTGAATCATATGTTAGCATGACAATTTCCTTTCTCTTACTCATTTTATTAAGTAATAAATATCAGCACATTAGAGCATGCACTGTTGAGTTACCTACAGTATAAAGTTCAGAATTATGTCTATTTTTCTATTAAACCTTTTAGAATGAAGCATTTATTTACTCTGTCAGTCCCCAAAGTAATCATTTGGCATTGCACACCCTGGAAAGCAGAGACAATGGTGGCTGCTTTCGTACAGTTTGTCTTGACATAATTAAAATAccaaaatccatgttatgttttgttaaataaatgtcagaatgGCTCAAATCTAAATGGAGTGAGAGAAAAGAGTGTGATGCTGTTTCTGCAGCTGAATGCATTTCCAAATGTCAAACGGATCGTATGTGTAGCTGTATATtgatgtttggttaaaaaaaataacaatgaaataaaatcctttttttctg

Function

NR:

description
leucine-rich repeat-containing protein 38-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798389.1 True 6732 mRNA 0.42 2 27881093 27900596

Neighbor

gene id symbol gene type direction distance location
LOC120556812 NA coding upstream 4482 27875542 ~ 27876611 (+)
nmur3 LOC102295936,LOC100702544,LOC102199352,LOC101463611 coding upstream 262932 27610111 ~ 27618161 (+)
alpl alpl coding upstream 339026 27521855 ~ 27542067 (+)
zgc:158258 NA coding upstream 477696 27395736 ~ 27403397 (+)
yod1 NA coding upstream 487126 27388769 ~ 27393967 (+)
aadacl4 NA coding downstream 60129 27960725 ~ 27964094 (+)
c4h1orf158 NA coding downstream 63963 27964559 ~ 27966394 (+)
LOC120558056 NA coding downstream 466314 28366910 ~ 28369124 (+)
rnf207a rnf207 coding downstream 711944 28612540 ~ 28640689 (+)
LOC120557435 NA coding downstream 820315 28720911 ~ 28722206 (+)
G42147 NA non-coding upstream 227645 27653121 ~ 27653448 (+)
G42085 NA non-coding upstream 419334 27460521 ~ 27461759 (+)
G42075 NA non-coding upstream 434812 27442408 ~ 27446281 (+)
G42074 NA non-coding upstream 438754 27440480 ~ 27442339 (+)
G42061 NA non-coding upstream 448709 27419787 ~ 27432384 (+)
G42211 NA non-coding downstream 314152 28214748 ~ 28215179 (+)
G42230 chd5,LOC102784485 non-coding downstream 660198 28560794 ~ 28561264 (+)
G42249 rpl22,LOC104952292 non-coding downstream 709621 28610217 ~ 28611502 (+)
LOC120557449 NA non-coding downstream 930012 28830608 ~ 28836904 (+)
G42345 NA non-coding downstream 980248 28880844 ~ 28881314 (+)
ephb2b LOC104917933,LOC103376520 other upstream 57833 27670963 ~ 27823260 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other upstream 1116356 26652851 ~ 26764737 (+)
G41850 rps10,LOC102793608 other upstream 1332294 26542507 ~ 26548799 (+)
G41825 NA other upstream 1607778 26268602 ~ 26273315 (+)
LOC120558088 LOC104941431 other upstream 1973355 25904769 ~ 25907738 (+)
G42449 NA other downstream 1339817 29240413 ~ 29242253 (+)
ergic3 ergic3,LOC102788871 other downstream 2208939 30109535 ~ 30135834 (+)
G43045 NA other downstream 4559536 32460132 ~ 32460863 (+)
G43051 LOC102201960 other downstream 4570199 32470795 ~ 32471605 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other downstream 5137338 33037934 ~ 33041311 (+)

Expression


Co-expression Network