nudt3b (nudt3)


Basic Information

Item Value
gene id nudt3b
gene name nudt3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 26531513 ~ 26540962 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798417.1
GCGTAGCGGCTTCTTGTAATGGCGACCGTGCCGTAGATGTGCCTAGGTTTGTGAAAATGAAGCGAAGAAGAAGTTATTTCTTTTAAGTAAAACGCCGAGGTTCCCCGGAGGAGGACTTTGCGTCTACAAGCATCATCTTTATCAGTGGTAAACTTAGCTGTACTTTTGAACTTTTATGCCCTTTGAAATGATGAAGCTCAAGTCAAACCAAACCCGGACGTACGACGGGGATGGCTACAAGAAGCGGGCCGCCTGTCTGTGTTTCAGGAGCGAGACTGAGGAGGAGGTACTGCTGGTGAGCAGTAGTCGACATCCTGACAAGTGGATAGTTCCTGGAGGGGGAATGGAGCCCGAGGAGGAGCCCAGTGTTGCTGCAGCTCGAGAAGTGTGTGAAGAGGCCGGTGTGAAGGGGACTTTAGGTCGCTTAGTTGGAGTATTTGAGAACCAAGAGAGGAAACACAGAACCTACGTCTACGTTCTTATTGTAACAGAGTTGCTGGAGGACTGGGAGGACTCGGTCAACATTGGGAGAAAAAGGGAATGGTTTAAAATAGACGATGCCATGCAAGTGTTGCAGTGTCACAAGCCTGTGCAGGCCACCTACTTCGAGGCTCTCCAGGAGAGTTGCCCGACCAGTAATGGAACACCTTTGGTGGCAACGATAGGCGGGGACCTTTCCCCTACCTACAGCATCAATCAGAGCTCCGTCTCGGGTATCAGATAACTAAAACTCTGACACCTCCGGGAGTTTTCGCCACCACTTGCGCTCTTACTTGTGTCATTTCTCTTCTCTGTTCTTTTCTCTTCTGTCTAAATAACATGGTTTGCCTTGCCAACTCCTTTGTGCCAGAACTGTGGCGCAGACCTGATGACAAGTGTTGGGTGAATAGTCTGAAACACtttgtaaatgtaattttcgacccctatttttttttttgtttgttttctttgtactGACAACTGCATGAAATGTCTCCTCGCTCCCCTCATTCTCTTTCCTTAACGCGCCCTTAGCGTGGTGTTTATTGAATGCAAGAACTACTTTTTACTGTTGTAATGTAAAAGTGTATACTTAGTGCTTACGCTGAAGGCTTTTGGTGGTCTTTTTAAAGTctcctccattttttttaaaaaaatttttttccaGTTATTTCTCTGTGAATGAATGTGCCCATTAGTGTACTCTCTCCCCTGTTAATAAGGAAAGGAAATGTTGTCTGTATCTGAATGAACACAATTGTGGGAAGTGACTTGTCTTGCATGAGCACTGTTATGTTGTGTCTCACTCGCTCGAGTGACCTGATGCTGACTGTGCAACAGACTTGTGGTAAGGTCTTTGTTTAGCTCCTTATCGTGGTTTTTGATGTCTCTTGAATCCGAAGGATTTGGCCCCTCACTAGTTCTTCAATTTCaagtgtgtttctctctcattTGGGAAGCTAGCCAAGCACTACAGGTTTCACTCTCAAACAGAGCATATAGACTGTAAAGAGAGACTATCCACATACAATGTCAAATTACCACCTTTCTCCTCAGTGTCTTTACATCCTTTTTTAatcccttattttttttattctttcctTACAAAGTCTTCCTCCACATACTGAGAGGGTAGAAGTAGTAGAGCTTAAAATCATTGGGTCATGGTAATTTCAAAATGCAGCACATATCACTTAAGTTATTAAAACCAATTTCCATATTTAACTCCTCACATTCAGTTTGGTTAAAAGCAATTGTTTACACTGTTCGTAACAGCACAGGTGACTAGTGGGCACTCATGgtcatatttcatttatttttatttttattttttttaccccaTTCTTTTTAAGTATAGTATTTAATCGGCATCCCAAAAACACTCAAAACACCTGCTTGACATCGAAAGTAATGGAATCTATAACGCTGATGCAGAACAAACAAACCTTGTACAGTTTGAGACCTCGTTTTTTAACATGTAAAATGCTTTTGGATACtagttattgtttttatgtttttctctcAAACGTCTGGCAAAAGTCTCTTTAGCCGAGCTGCGTCACTTGGCCTCGATGTGGCAGGGGCAGCTGGCTCAATACTGTGAAACTGGAGGCTCTGTAGATAGCACGTTAGAggtttttattgtaaattgtttatttctgtATAGATCAAAGGTGTGAGTACAAATGACAAAACACCTCTTGCACATCTGTGATGTCGTGTCCGACATGTCATTTCAACTGAGGCTGGAAGAAGTGATTGGCGTTGGCTTTGGAGCTGTTGGGAACTTTCTCTTGAGATAGCATACAGTACATCTGAGGCTAAAGAACGAGGCATGTGGCCGTGGTTGTTGGTGAGAGTGAAAAGTCTACAATAGAATATTCTCAAATCCTTCCTTTTCACTTAGACCAAAACAAATTTGTAACCTTAAGTGATACTGTTGTTTTTTGGCCAAGCTAAAGTCTTGAGTTTCCAAACCACTACTTAGTTAAAAAGTAAAGCAGACCTGAAATTTCTTTTCAAGCCAGCAGCTGTTCACTGTCGGTGTGTTTTCTCATAGGCTTTCTTTGATTGGTCTTTCTAAAAAAGGGAAACATGATTGTCGTTTTCTGTCCATATTTAAACCTGTAATAAGAGTTTTTGACCACTTGGGAGCTGTGgaaaacaagctgtaaacacaacattgacattgttttttttttaacattatatgGCAAACTTGTTGGCAAAAAGTTGACATATTTACAcatacagcatatactgtatgctaTATGGAGCAAAATTGGCAGACGTTatgtcttttaattttttttttttttagtacatATAAGTCAATGATTACCTTTCCAGCATTCAAACTACAGCTCTAATTGGGTTTTGATCTTGCGCCTATGGCTAAGACTCATGGGAGCTGTAGTTTTTGAATGGCAACAAAATAAGCAAAATTGTTTTAATCTTTGGTTAAAATGATGGGATGCTCAAAATTTACTGTCCAGGACAGTAGCAGATGTTCATTTAACTTTGAATAGGGACAGAAAACTCAAGTATCGTGATTCAGTCGACCAGAAACGGGGGGGGGCTTCATGGGACAgcggttcccaaactttttcatgTGAAGGACCCCTAAattgacacaaattagaccccccccctccaaaaagaaaaagtccAATTATTTCAAAAGCCTAAGTTGGTATATTACaagaatatttaaaaacataaaataagtCCTAATATTTCAAGAAGTTGAACTACTAGTTCTGATTGACAGTATATGTGAAAGGAGTCTAAGGCTCCTTCCCAACAGTTTGAGCCTTTGAACTGTTCTGTTGCTGTGTATCAGAAAGGTGAGGTGGCCAAAGTCTTGCTTTATGATGCTCTACCTGGCACTTCATATGAGCGTTTGTGCTGATTAGACCTTTAAGTCTGTAAGGAAATGTGCAATCGGATGTTAAGGGgatgaacctttttttttttttttttatatggtttggaagaaaaaaatctaaaacctTTCTTAAGTGATTGGCAATTTGCTCTTGGTGGTTGGATGCCGGTGACAGGTactgtcaaaatgaatgtgaGGAGGATTTCTACAAGTAACAGCCAGTGATTTAATTAATGACCACTTGTTCTtgatctatttttttcttttctttaatctGTTGTGTTATTGACAAGCTAATGTCTTGTATATAGCTAACACAGCACCCTTACAGCCAGAGGACACACTGGCGTTGGTCAATAAGGAgtagtctttttttattattataaaccaCTCCCTGCTAACTTAAAATTCAGGCACTTCCTGTTATAAGTAAAGTGATTTTGGCTGAAGTTCAGGAGGGAATTTATGAAGTACATGTATCCATATAAGCACGTTGGAGGCAAAAGGCGTCGGACCTTTCTTCACAATTGGCTCTTTTGAActtgggggaagggggggggatgAATTAATGATAGAACAATTAGAGCTTCAgatgaagtcacttcttttaaTTTACCAAAAGTGGTGGTTTaaatatgtattgcctcatctTGTGGCCAAAGcaacaatgaaaaatgaaaagcacATCACTTTGCAGCTGAGGATTGTAACAGTTTCCTTTAGCACGATGACATCATTTTCATGACTAAATGACTTCACTAATTAGAAATGGATTGAAAAAGCTGCTAAAAGATTACCCCAAATACTAGTAATTAAATGAACTGAACATGTGCACCCGACCTCAGCCTTGAAGTTACATAACTTGCAATTGTGTTCTCCAAGGTATACGTGTCACTGgaatttttcttttcctctctgtcatTTGGGACTGGAATTAAACCAGTGCAAGAAGACTGAAGATTGTAATATAAATGTGCCAACAAATAAACACCAGTATTTCACATTCA

Function

symbol description
nudt3 Enables magnesium ion binding activity and pyrophosphatase activity. Involved in RNA decapping and diphosphoinositol polyphosphate catabolic process. Located in cytosol.

NR:

description
PREDICTED: diphosphoinositol polyphosphate phosphohydrolase 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798417.1 True 4374 mRNA 0.40 5 26531513 26540962

Neighbor

gene id symbol gene type direction distance location
LOC120557651 LOC107089162,LOC104944127,LOC103355802 coding upstream 361428 26129594 ~ 26170085 (+)
mybphb LOC103464713,LOC107089157 coding upstream 406775 26114854 ~ 26124738 (+)
nav1b nav1,LOC103355819 coding upstream 417340 26033751 ~ 26114173 (+)
pkp1b NA coding upstream 533958 25985150 ~ 25997555 (+)
smpd2b smpd2,LOC102787414 coding upstream 547470 25974025 ~ 25984043 (+)
pacsin1b LOC104965611,LOC103355721 coding downstream 9855 26550817 ~ 26585593 (+)
snrpc NA coding downstream 89467 26630429 ~ 26633652 (+)
slc2a1b slc2a1,LOC108231650,LOC104928076 coding downstream 249522 26790484 ~ 26815402 (+)
si:dkey-166d12.2 LOC100709810,LOC102797006,LOC102307918,LOC103355584 coding downstream 304888 26845850 ~ 26962727 (+)
lrig2 lrig2,LOC102799082 coding downstream 442298 26983260 ~ 27008409 (+)
LOC120557964 NA non-coding upstream 126611 26400453 ~ 26404902 (+)
G41835 NA non-coding upstream 186054 26344137 ~ 26345459 (+)
G41834 LOC104955002 non-coding upstream 193309 26324805 ~ 26338204 (+)
G41827 LOC106518302,LOC101482215,LOC102196619,LOC102290668 non-coding upstream 255584 26275122 ~ 26275929 (+)
LOC120557409 NA non-coding upstream 279419 26222077 ~ 26252094 (+)
G41865 tcp11 non-coding downstream 166307 26707269 ~ 26709577 (+)
G41927 NA non-coding downstream 397515 26938477 ~ 26938745 (+)
LOC120558213 NA non-coding downstream 653210 27194172 ~ 27209333 (+)
G42020 NA non-coding downstream 684321 27225283 ~ 27227610 (+)
G42031 NA non-coding downstream 801637 27342599 ~ 27342850 (+)
G41825 NA other upstream 258198 26268602 ~ 26273315 (+)
LOC120558088 LOC104941431 other upstream 623775 25904769 ~ 25907738 (+)
LOC120558082 kcna10,LOC104941363 other upstream 658594 25767092 ~ 25872919 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other upstream 840578 25682407 ~ 25690935 (+)
slc12a5a LOC103355988 other upstream 1220960 25208156 ~ 25310553 (+)
G41850 rps10,LOC102793608 other downstream 1545 26542507 ~ 26548799 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other downstream 111889 26652851 ~ 26764737 (+)
ephb2b LOC104917933,LOC103376520 other downstream 1130001 27670963 ~ 27823260 (+)
G42449 NA other downstream 2699451 29240413 ~ 29242253 (+)
ergic3 ergic3,LOC102788871 other downstream 3568573 30109535 ~ 30135834 (+)

Expression


Co-expression Network