barx1 (barx1)


Basic Information

Item Value
gene id barx1
gene name barx1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 33760090 ~ 33765508 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798454.1
GAAGAGGTGGAGCTATGACGAGACTCATAAAACCCAAAGCTTATTCCTCAACTCACTGCCAAGGTGACGCGCTCAGCGGCTGGCGAGTACCTCCGACCTCCGCGGATCACACACAGCGAGTGGTGGGCATGAACACGGCCGGGTTCGGGAGTTTTTGGTCAAAGGTCTGCTCTCGGTTCCAAATTTCCTCTCCAAAAAGAACTCATCTGGCCAGAAGTAACGCGTAAAAACCCGGCACAGGACGCACAGACGCGAAGGAAGTCGGCTGCCTGTACTTGATATTTTCCTATACCTGAGGATAACTTTGTTCCACTTGATATACGGGCTAAAGAGGCATTACAGAGCGAATATGACAGCCGGCTTGGGCCACTGAAGGAGTGATAATCGGTGACCGCACAGCCACATTATGCAGCATCCTTTGGAAATGGGGGCGCATTACTATCCTCCGGAGGTACATGACCACAGAACTCATCGCTACAGGAGTTTCATGATAGAGGAGATCCTGACTGACCACCCCGAGCATAAAGCGTCGACTCCGGCCGGGGAGCTCCTTAAATTCGGGGTACACGCTCTCCTGTCCGCCCGGCCTTTCCATAACCAGCTGGTGCTAAAAGCCGACCAGACGAGCCTCCTCAAGTTCCCCATGTCTCCGCTCTCCTGCTCGCTGGGCTCCCCGCTCGGCTCCCCGCTGCTGTCCGCGGCGTCGGGCCTGCAGCTCGGCACGGCGTCTCACCACCTGCCGCTTGACCTGCACCTCCGCGGTAAGCTGGACCACGGGGCCGACGGGGGCAGCAAGACCAAGAAGGGCCGGCGAAGCCGCACCGTGTTCACCGAGCTGCAGCTCATGGGGCTGGAGAAACGCTTCGAGAAGCAGAAGTATCTCTCTACGCCTGATAGAATAGATCTGGCCGAGTCTTTGGGCCTCAGTCAGCTGCAAGTGAAAACATGGTACCAGAACAGAAGGATGAAGTGGAAGAAAATTGTGTTGCAGGGAGGAGGCCTGGAGTCACCCACCAAACCAAAAGGCCGCCCAAAGAAGAACTCCATCCCCAGCAGCGAGCAGCTCTCTGAACAGGAACGATCTGCCGCTGACACTGACCGCCAATCCGAAGGCTCGAGCTCCCATGAGAACGCTCAGGAGGAATGACCCCGGCCACTGCTCGCAGATACTCTGGCTCTATTACGCAGAGCCTCTGGGACGCTCAGTGTGTATCTTTTGGATGGAGCCAGACTCCAAAAACGGCATGAAGAGGATGTGCTAATGCTCCCTGAAGCTGGGCCGCCTTGTGCAGGCTCCAAAGACTCGCAGGTCCCGCAAGAAGTCTAAACTGTACACGCCAACATGCTCCAACAgccaatgtgtttttttttttttatcgtagCCCAACGTGCATTCCCTCTTGAAGAACTTTCTGCTGTTGAGGAGGGAGCTCAAACCTTTGCAGTAGGTCTACCCTTTATATTCTAAGGATCCACTCTCACTCATCTGTTTTGCATTCCCTTTGTGTAA
>XM_039798455.1
CTGGTCCCTGAGAAGAGGTGGAGCTATGACGAGACTCATAAAACCCAAAGCTTATTCCTCAACTCACTGCCAAGGTGACGCGCTCAGCGGCTGGCGAGTACCTCCGACCTCCGCGGATCACACACAGCGAGTGGTGGGCATGAACACGGCCGGGTTCGGGAGTTTTTGGTCAAAGGTCTGCTCTCGGTTCCAAATTTCCTCTCCAAAAAGAACTCATCTGGCCAGAAGTAACGCGTAAAAACCCGGCACAGGACGCACAGACGCGAAGGAAGTCGGCTGCCTGTACTTGATATTTTCCTATACCTGAGGATAACTTTGTTCCACTTGATATACGGGCTAAAGAGGCATTACAGAGCGAATATGACAGCCGGCTTGGGCCACTGAAGGAGTGATAATCGGTGACCGCACAGCCACATTATGCAGCATCCTTTGGAAATGGGGGCGCATTACTATCCTCCGGAGGTACATGACCACAGAACTCATCGCTACAGGAGTTTCATGATAGAGGAGATCCTGACTGACCACCCCGAGCATAAAGCGTCGACTCCGGCCGGGGAGCTCCTTAAATTCGGGGTACACGCTCTCCTGTCCGCCCGGCCTTTCCATAACCAGCTGGTGCTAAAAGCCGACCAGACGAGCCTCCTCAAGTTCCCCATGTCTCCGCTCTCCTGCTCGCTGGGCTCCCCGCTCGGCTCCCCGCTGCTGTCCGCGGCGTCGGGCCTGCAGCTCGGCACGGCGTCTCACCACCTGCCGCTTGACCTGCACCTCCGCGGTAAGCTGGACCACGGGGCCGACGGGGGCAGCAAGACCAAGAAGGGCCGGCGAAGCCGCACCGTGTTCACCGAGCTGCAGCTCATGGGGCTGGAGAAACGCTTCGAGAAGCAGAAGTATCTCTCTACGCCTGATAGATCTGGCCGAGTCTTTGGGCCTCAGTCAGCTGCAAGTGAAAACATGGTACCAGAACAGAAGGATGAAGTGGAAGAAAATTGTGTTGCAGGGAGGAGGCCTGGAGTCACCCACCAAACCAAAAGGCCGCCCAAAGAAGAACTCCATCCCCAGCAGCGAGCAGCTCTCTGAACAGGAACGATCTGCCGCTGACACTGACCGCCAATCCGAAGGCTCGAGCTCCCATGAGAACGCTCAGGAGGAATGACCCCGGCCACTGCTCGCAGATACTCTGGCTCTATTACGCAGAGCCTCTGGGACGCTCAGTGTGTATCTTTTGGATGGAGCCAGACTCCAAAAACGGCATGAAGAGGATGTGCTAATGCTCCCTGAAGCTGGGCCGCCTTGTGCAGGCTCCAAAGACTCGCAGGTCCCGCAAGAAGTCTAAACTGTACACGCCAACATGCTCCAACAgccaatgtgtttttttttttttatcgtagCCCAACGTGCATTCCCTCTTGAAGAACTTTCTGCTGTTGAGGAGGGAGCTCAAACCTTTGCAGTAGGTCTACCCTTTATATTCTAAGGATCCACTCTCACTCATCTGTTTTGCATTCCCTTTGTGTAA

Function

symbol description
barx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within cartilage development; pharyngeal system development; and positive regulation of mesenchymal cell proliferation. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; mesenchyme; neural crest; pharyngeal arch; and posterior lateral line ganglion. Orthologous to human BARX1 (BARX homeobox 1).

NR:

description
PREDICTED: homeobox protein BarH-like 1 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798454.1 False 1510 mRNA 0.55 4 33760101 33765508
XM_039798455.1 True 1516 mRNA 0.55 4 33760090 33765508

Neighbor

gene id symbol gene type direction distance location
LOC120557830 LOC105888650,LOC105896821,LOC101068541,LOC103395674,LOC106527799 coding upstream 241966 33516838 ~ 33518124 (+)
LOC120557832 LOC106528837,LOC107102779 coding upstream 255782 33503798 ~ 33504308 (+)
LOC120557833 LOC103462478,LOC107386469,LOC102204254,LOC103381127,LOC101485372,LOC103379246 coding upstream 323982 33435527 ~ 33436108 (+)
LOC120557839 LOC107671222,LOC106963510,LOC107723971 coding upstream 406267 33353406 ~ 33353823 (+)
LOC120557835 si:ch1073-153i20.5,LOC103462478,LOC107386469,LOC101485372,LOC102204254,LOC103381127 coding upstream 408154 33351368 ~ 33351936 (+)
znf831 NA coding downstream 260803 34026311 ~ 34040283 (+)
LOC120557827 NA coding downstream 281924 34047432 ~ 34067342 (+)
LOC120557093 NA coding downstream 604721 34370229 ~ 34371094 (+)
LOC120557490 NA coding downstream 1239434 35004942 ~ 35006128 (+)
ube2v1 LOC103133159,LOC106912622,LOC102222270,LOC103465507,LOC104930303,LOC106519068 coding downstream 1397976 35163484 ~ 35199996 (+)
G43413 NA non-coding upstream 191180 33568467 ~ 33568910 (+)
G43412 NA non-coding upstream 196601 33559300 ~ 33563489 (+)
G43409 NA non-coding upstream 204912 33553375 ~ 33555178 (+)
G43408 NA non-coding upstream 218424 33541460 ~ 33541666 (+)
G43395 NA non-coding upstream 240021 33519863 ~ 33520069 (+)
G43444 NA non-coding downstream 10682 33776190 ~ 33776391 (+)
LOC120557846 samd3,LOC101476819 non-coding downstream 18819 33784327 ~ 33785135 (+)
G43452 NA non-coding downstream 102072 33867580 ~ 33868547 (+)
G43474 NA non-coding downstream 190449 33955957 ~ 33956156 (+)
G43512 NA non-coding downstream 305362 34070870 ~ 34071072 (+)
LOC120557806 LOC105901862,LOC101061984,LOC103047442 other upstream 414284 33340284 ~ 33345806 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other upstream 423323 33262195 ~ 33336767 (+)
G43277 NA other upstream 547772 33187738 ~ 33212318 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other upstream 718779 33037934 ~ 33041311 (+)
G43051 LOC102201960 other upstream 1288485 32470795 ~ 32471605 (+)
G43656 NA other downstream 899728 34665236 ~ 34667182 (+)
LOC120556915 NA other downstream 1698264 35463772 ~ 35486235 (+)
G43924 NA other downstream 1898635 35664143 ~ 35666041 (+)
trnac-gca_18 NA other downstream 2197031 35962539 ~ 35962610 (+)
fezf2 fezf2 other downstream 2937747 36703255 ~ 36711295 (+)

Expression


Co-expression Network