LOC120557827


Basic Information

Item Value
gene id LOC120557827
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 34047432 ~ 34067342 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798460.1
GATAGATGAGCAGATATATGACGTTTTGACACACAGAACACGCACTGGACTTTTAATCTTGTTTGCAGgatttcagcattttttttttcttttcttctcataTTCTttaaatttctttatttttaacattccCATGTTTCGTGTGTGATGGCTAATATATCATCTGTTGATATGGGAGTTGTGTTTGTTATCGTGGTGACAGCATCTTTGGCAAACGCAGGTTTCTCATCAAGCATAGATGTGAGCCAGAGGAATGAGGTGGAAGCTGTTAATCTGAGCACGCTGCTGCATGGCGGTGTGAACCAGCTTGCCGGGAAAGCAGAACCCTGCTCTGCCTGTGACCCGCCGGGGGCCAGGAGGCGTTCAAAGAGATGCACGTGTTACACTTACAAGGACAAGGAGTGTGTGTATTACTGCCACCTGGACATCATCTGGATCAACACTCCAGAgcACACTGTACCGTATGGTATGTCCACTTACCAGGGTTCCCTGCGCAGGAGGCGCTCGGCTGGGACTgagcaggggaggaggggggcggCGGCCcagcgctgtgtgtgtgcacagcaCGCTGACTCCGACTGCAGTGGCTTCTGCATGGACAGCAAGCAGAGGAGGCCACCACCCAGAGCAGCTCGTAAAACAGACAAGAGGACAGCTTCTCTGCGCAGTGGGCCTGTTATGAAATGAACATTTAAGTGACATGCTAATGACCTGGAAGgtggacatactgtatgttatttTGTGCCTTGCGATCAGAGTGCTGGATGAATAACGTGTAGAGCTGCTGAAAGCGAGGGACACCAGCACTCTCTGCCTGTGTCTGTCCGGCAGGTGTGGATAGTTTTTCAGTATCCTATCACGACTGAGGATGGTTTACATGGCCTGCTTGTTGCGACAATGACAGACTTTGGTAGAGCACACACATGCCCATGCAGCGTGATGTGGAGGCCACTTCAAGAGCTTCTGCCATCCAACTCTACCGTCTCATCCCATTCTGGTAAATACACAAGAACGGTATCACTCCACATGGACATCATTCAACACAGCCAGTAACTCAGcagtattttctttaaaaatcacAATTTTGTCACAGTCACTGATTGTTTTATTAGGTTGTTCCCTTATGAATGCAGTTAGTTTCAGCAGTAATTGTTATTAttgctattattattttacttttctgtGAGATTTTTGGAGGTAAAGGAACTTTTGTTAAGCTGTATCCAAGTCTTGTGAATATGAAATGTGTTTcaatatatataggctataaatCATATTTCCGTACAAGACCTATATGTACATTAAAGGTGTAAAGTAAGATGTtgtatatataattatacaTGTGGTCAGGCTAATCAACAGTCCTCTGTGGTAAATAACCAATTTAAGTAACAATTGCAGTGGGCCATACAGTAAATTAATTATATCCTGTGTTTAGTCTTGTTATGGTTGAGCCCTGAGGCAATTCCCCAATCAACTGACCATCTGCACAGGAAAGATGTTAAGAACTAGTAGATAAGTCGAGCATCTCAGCCTACTGAATCAGTTTCAGTCTGACAAAAGGAAGACATTGATTCCTTACTTAATGTTTGAAATATTCTGATGCACA
>XM_039798461.1
GATAGATGAGCAGATATATGACGTTTTGACACACAGAACACGCACTGGACTTTTAATCTTGTTTGCAGgatttcagcattttttttttcttttcttctcataTTCTttaaatttctttatttttaacattccCATGTTTCGTGTGTGATGGCTAATATATCATCTGTTGATATGGGAGTTGTGTTTGTTATCGTGGTGACAGCATCTTTGGCAAACGGTTTCTCATCAAGCATAGATGTGAGCCAGAGGAATGAGGTGGAAGCTGTTAATCTGAGCACGCTGCTGCATGGCGGTGTGAACCAGCTTGCCGGGAAAGCAGAACCCTGCTCTGCCTGTGACCCGCCGGGGGCCAGGAGGCGTTCAAAGAGATGCACGTGTTACACTTACAAGGACAAGGAGTGTGTGTATTACTGCCACCTGGACATCATCTGGATCAACACTCCAGAgcACACTGTACCGTATGGTATGTCCACTTACCAGGGTTCCCTGCGCAGGAGGCGCTCGGCTGGGACTgagcaggggaggaggggggcggCGGCCcagcgctgtgtgtgtgcacagcaCGCTGACTCCGACTGCAGTGGCTTCTGCATGGACAGCAAGCAGAGGAGGCCACCACCCAGAGCAGCTCGTAAAACAGACAAGAGGACAGCTTCTCTGCGCAGTGGGCCTGTTATGAAATGAACATTTAAGTGACATGCTAATGACCTGGAAGgtggacatactgtatgttatttTGTGCCTTGCGATCAGAGTGCTGGATGAATAACGTGTAGAGCTGCTGAAAGCGAGGGACACCAGCACTCTCTGCCTGTGTCTGTCCGGCAGGTGTGGATAGTTTTTCAGTATCCTATCACGACTGAGGATGGTTTACATGGCCTGCTTGTTGCGACAATGACAGACTTTGGTAGAGCACACACATGCCCATGCAGCGTGATGTGGAGGCCACTTCAAGAGCTTCTGCCATCCAACTCTACCGTCTCATCCCATTCTGGTAAATACACAAGAACGGTATCACTCCACATGGACATCATTCAACACAGCCAGTAACTCAGcagtattttctttaaaaatcacAATTTTGTCACAGTCACTGATTGTTTTATTAGGTTGTTCCCTTATGAATGCAGTTAGTTTCAGCAGTAATTGTTATTAttgctattattattttacttttctgtGAGATTTTTGGAGGTAAAGGAACTTTTGTTAAGCTGTATCCAAGTCTTGTGAATATGAAATGTGTTTcaatatatataggctataaatCATATTTCCGTACAAGACCTATATGTACATTAAAGGTGTAAAGTAAGATGTtgtatatataattatacaTGTGGTCAGGCTAATCAACAGTCCTCTGTGGTAAATAACCAATTTAAGTAACAATTGCAGTGGGCCATACAGTAAATTAATTATATCCTGTGTTTAGTCTTGTTATGGTTGAGCCCTGAGGCAATTCCCCAATCAACTGACCATCTGCACAGGAAAGATGTTAAGAACTAGTAGATAAGTCGAGCATCTCAGCCTACTGAATCAGTTTCAGTCTGACAAAAGGAAGACATTGATTCCTTACTTAATGTTTGAAATATTCTGATGCACA

Function

GO: NA

KEGG:

id description
K05227 EDN3; endothelin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798460.1 True 1609 mRNA 0.44 4 34047432 34067342
XM_039798461.1 False 1606 mRNA 0.44 4 34047432 34067342

Neighbor

gene id symbol gene type direction distance location
znf831 NA coding upstream 7149 34026311 ~ 34040283 (+)
barx1 barx1 coding upstream 281924 33760090 ~ 33765508 (+)
LOC120557830 LOC105888650,LOC105896821,LOC101068541,LOC103395674,LOC106527799 coding upstream 529308 33516838 ~ 33518124 (+)
LOC120557832 LOC106528837,LOC107102779 coding upstream 543124 33503798 ~ 33504308 (+)
LOC120557833 LOC103462478,LOC107386469,LOC102204254,LOC103381127,LOC101485372,LOC103379246 coding upstream 611324 33435527 ~ 33436108 (+)
LOC120557093 NA coding downstream 302887 34370229 ~ 34371094 (+)
LOC120557490 NA coding downstream 937600 35004942 ~ 35006128 (+)
ube2v1 LOC103133159,LOC106912622,LOC102222270,LOC103465507,LOC104930303,LOC106519068 coding downstream 1096142 35163484 ~ 35199996 (+)
LOC120556883 LOC104930311,LOC103370811,LOC104960357,LOC100711115,LOC101474327 coding downstream 1207755 35275097 ~ 35278434 (+)
LOC120556789 LOC104930304,LOC100703713,LOC103370810,LOC102215223 coding downstream 1249135 35316477 ~ 35319169 (+)
G43474 NA non-coding upstream 91276 33955957 ~ 33956156 (+)
G43452 NA non-coding upstream 178885 33867580 ~ 33868547 (+)
LOC120557846 samd3,LOC101476819 non-coding upstream 262297 33784327 ~ 33785135 (+)
G43444 NA non-coding upstream 271041 33776190 ~ 33776391 (+)
G43413 NA non-coding upstream 478522 33568467 ~ 33568910 (+)
G43512 NA non-coding downstream 3528 34070870 ~ 34071072 (+)
G43514 NA non-coding downstream 8529 34075871 ~ 34147068 (+)
LOC120557850 NA non-coding downstream 90663 34158005 ~ 34159010 (+)
G43533 NA non-coding downstream 107167 34174509 ~ 34174806 (+)
G43537 NA non-coding downstream 126686 34194028 ~ 34194326 (+)
LOC120557806 LOC105901862,LOC101061984,LOC103047442 other upstream 701626 33340284 ~ 33345806 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other upstream 710665 33262195 ~ 33336767 (+)
G43277 NA other upstream 835114 33187738 ~ 33212318 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other upstream 1006121 33037934 ~ 33041311 (+)
G43051 LOC102201960 other upstream 1575827 32470795 ~ 32471605 (+)
G43656 NA other downstream 597894 34665236 ~ 34667182 (+)
LOC120556915 NA other downstream 1396430 35463772 ~ 35486235 (+)
G43924 NA other downstream 1596801 35664143 ~ 35666041 (+)
trnac-gca_18 NA other downstream 1895197 35962539 ~ 35962610 (+)
fezf2 fezf2 other downstream 2635913 36703255 ~ 36711295 (+)

Expression


Co-expression Network