LOC120557830 (LOC105888650,LOC105896821,LOC101068541,LOC103395674,LOC106527799)


Basic Information

Item Value
gene id LOC120557830
gene name LOC105888650,LOC105896821,LOC101068541,LOC103395674,LOC106527799
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 33516838 ~ 33518124 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798464.1
TTTAAGAGCCGCGGGTCTCTCCGTTTCACTTTACATTTTTCCTGATCGTAGAGAGAAAAAGCCATGGCAAGAACCAAGCAGACCGCTcgtaaatccaccggaggtaaAGCCCCCAGGAAACAGCTGGCCACCAAGGCTGCCCGTAAGAGCGCCCCGGCCACCGGCGGCGTGAAGAAGCCTCACCGTTACAGGCCCGGTACCGTGGCTCTGAGAGAGATCCGTCGCTACCAGAAATCCACGGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTCCGAGAAATCGCTCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCTCCGCCGTCATGGCTCTGCAGGAGGCCAGCGAGGCTTACCTGGTCGGCCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGAGGGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGCCGCATCCGCGGAGAGAGGGCTTAAACTGTCTGCTGCTTCTCCACACACCACAAaggctcttttaagagccaccAAATCATCTTAAAGagtatttcctttttatttctattcTGTCTTAAACACGAAACCCACAATCTGTACTTACTATGAAGTATTGACACTTGAACTGAAGTGAAGTCAAAGAAAGAGAAAACCCCAAATCATGTTGAAAATATCTGAACTTATATATGCTGTTAACATTATGACAATAACATATTTTCACTCATATTTACAGACAGTGATCTGAATGTGAAGTCGTATAAAACCTACACAGATGTGTATAGTGATATTTACATGAATACAATGACGACCTATAAAGTCCATttcgaaaaaaataaaaaaatctataatGGACTAAAAAAAAGCAGTAGCTTATTAATTTGTCGGTTAAGTAATTATAATTAAACGAATTTTATGTTGAGATAAGCTGTGTTGGCTCAGGAGAGAAATTCttctataaataaaaataattagaaCAATGTGAAAAAACTGGTGGTTAAATTAAGAATTGAACAGGTCACATTTATTACAGTTGAATCCTGTTCAGTGGAACACTTTGACCAGCAGAGGGCGATAAAGCATCAGCAGAAAAGTCCTGCTACAAGATCCTCTCCTCAGAATACACAACATTTAAGGACactatattatatactataaaaataaaagatttcacCATGAAAgttccccagttgattactgacattaagacaattcttttttgtattgcaagttttctgaaatgttatgtttaaatgtgCAAAAGAGGCAAGTGTATTAAAATAAACAGCTGGCTGTGTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC105888650

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0007596 blood coagulation biological_process
GO:0000786 nucleosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11253 H3; histone H3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798464.1 True 1287 mRNA 0.42 1 33516838 33518124

Neighbor

gene id symbol gene type direction distance location
LOC120557832 LOC106528837,LOC107102779 coding upstream 12530 33503798 ~ 33504308 (+)
LOC120557833 LOC103462478,LOC107386469,LOC102204254,LOC103381127,LOC101485372,LOC103379246 coding upstream 80730 33435527 ~ 33436108 (+)
LOC120557839 LOC107671222,LOC106963510,LOC107723971 coding upstream 163015 33353406 ~ 33353823 (+)
LOC120557835 si:ch1073-153i20.5,LOC103462478,LOC107386469,LOC101485372,LOC102204254,LOC103381127 coding upstream 164902 33351368 ~ 33351936 (+)
LOC120557808 NA coding upstream 168272 33346791 ~ 33348566 (+)
barx1 barx1 coding downstream 241966 33760090 ~ 33765508 (+)
znf831 NA coding downstream 508187 34026311 ~ 34040283 (+)
LOC120557827 NA coding downstream 529308 34047432 ~ 34067342 (+)
LOC120557093 NA coding downstream 852105 34370229 ~ 34371094 (+)
LOC120557490 NA coding downstream 1486818 35004942 ~ 35006128 (+)
G43356 NA non-coding upstream 93023 33388181 ~ 33423815 (+)
G43330 NA non-coding upstream 178590 33337962 ~ 33338248 (+)
LOC120557802 NA non-coding upstream 461455 33043108 ~ 33055383 (+)
G43195 LOC104931984,LOC102207393,LOC107384966,LOC102780474 non-coding upstream 550556 32962251 ~ 32966282 (+)
LOC120556764 NA non-coding upstream 604963 32909188 ~ 32911875 (+)
G43395 NA non-coding downstream 1739 33519863 ~ 33520069 (+)
G43408 NA non-coding downstream 23336 33541460 ~ 33541666 (+)
G43409 NA non-coding downstream 35251 33553375 ~ 33555178 (+)
G43412 NA non-coding downstream 41176 33559300 ~ 33563489 (+)
G43413 NA non-coding downstream 50343 33568467 ~ 33568910 (+)
LOC120557806 LOC105901862,LOC101061984,LOC103047442 other upstream 171032 33340284 ~ 33345806 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other upstream 180071 33262195 ~ 33336767 (+)
G43277 NA other upstream 304520 33187738 ~ 33212318 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other upstream 475527 33037934 ~ 33041311 (+)
G43051 LOC102201960 other upstream 1045233 32470795 ~ 32471605 (+)
G43656 NA other downstream 1147112 34665236 ~ 34667182 (+)
LOC120556915 NA other downstream 1945648 35463772 ~ 35486235 (+)
G43924 NA other downstream 2146019 35664143 ~ 35666041 (+)
trnac-gca_18 NA other downstream 2444415 35962539 ~ 35962610 (+)
fezf2 fezf2 other downstream 3185131 36703255 ~ 36711295 (+)

Expression


Co-expression Network