LOC120557832 (LOC106528837,LOC107102779)


Basic Information

Item Value
gene id LOC120557832
gene name LOC106528837,LOC107102779
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 33503798 ~ 33504308 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798467.1
AACACGAAAAATGTCTGGAAGAGGGAAAACTGGAGGAAAAGCCAGAGCGAAGGCCAAGACCCGCTCCTCCCGTGCTGGGCTCCAGTTCCCGGTCGGCCGCGTCCACAGGCTGCTCCGCAAAGGAAACTACGCTCAGCGTGTAGGAGCCGGCGCCCCCGTCTACCTGGCGGCTGTGCTGGAGTACCTGACCGCTGAGATCCTGGAGCTGGCTGGAAACGCTGCCCGCGACAACAAGAAGACCCGTATCATCCCCCGTCACCTGCAGCTGGCTGTCCGCAACGACGAGGAGCTTAACAAGCTGCTGGGCGGAGTGACCATCGCTCAGGGCGGCGTGCTGCCCAACATCCAGGCCGTCCTGCTGCCCAAAAAGACCGAGAAGCCCGCCAAGAAGTAAATCCCAGGAACCGGCTTCAACCAAACCAACAacggctcttttaagagccacacACGTCCAGCTAAAGACAAATCCTAATTTGTGACTATTGCGACATTAAATTGTAGGTGACATTTG

Function

NR:

description
PREDICTED: histone H2A-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798467.1 True 511 mRNA 0.58 1 33503798 33504308

Neighbor

gene id symbol gene type direction distance location
LOC120557833 LOC103462478,LOC107386469,LOC102204254,LOC103381127,LOC101485372,LOC103379246 coding upstream 67690 33435527 ~ 33436108 (+)
LOC120557839 LOC107671222,LOC106963510,LOC107723971 coding upstream 149975 33353406 ~ 33353823 (+)
LOC120557835 si:ch1073-153i20.5,LOC103462478,LOC107386469,LOC101485372,LOC102204254,LOC103381127 coding upstream 151862 33351368 ~ 33351936 (+)
LOC120557808 NA coding upstream 155232 33346791 ~ 33348566 (+)
cand2 LOC100694792,LOC102304752,LOC101484714,LOC108244949 coding upstream 470501 33002103 ~ 33033297 (+)
LOC120557830 LOC105888650,LOC105896821,LOC101068541,LOC103395674,LOC106527799 coding downstream 12530 33516838 ~ 33518124 (+)
barx1 barx1 coding downstream 255782 33760090 ~ 33765508 (+)
znf831 NA coding downstream 522003 34026311 ~ 34040283 (+)
LOC120557827 NA coding downstream 543124 34047432 ~ 34067342 (+)
LOC120557093 NA coding downstream 865921 34370229 ~ 34371094 (+)
G43356 NA non-coding upstream 79983 33388181 ~ 33423815 (+)
G43330 NA non-coding upstream 165550 33337962 ~ 33338248 (+)
LOC120557802 NA non-coding upstream 448415 33043108 ~ 33055383 (+)
G43195 LOC104931984,LOC102207393,LOC107384966,LOC102780474 non-coding upstream 537516 32962251 ~ 32966282 (+)
LOC120556764 NA non-coding upstream 591923 32909188 ~ 32911875 (+)
G43395 NA non-coding downstream 15555 33519863 ~ 33520069 (+)
G43408 NA non-coding downstream 37152 33541460 ~ 33541666 (+)
G43409 NA non-coding downstream 49067 33553375 ~ 33555178 (+)
G43412 NA non-coding downstream 54992 33559300 ~ 33563489 (+)
G43413 NA non-coding downstream 64159 33568467 ~ 33568910 (+)
LOC120557806 LOC105901862,LOC101061984,LOC103047442 other upstream 157992 33340284 ~ 33345806 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other upstream 167031 33262195 ~ 33336767 (+)
G43277 NA other upstream 291480 33187738 ~ 33212318 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other upstream 462487 33037934 ~ 33041311 (+)
G43051 LOC102201960 other upstream 1032193 32470795 ~ 32471605 (+)
G43656 NA other downstream 1160928 34665236 ~ 34667182 (+)
LOC120556915 NA other downstream 1959464 35463772 ~ 35486235 (+)
G43924 NA other downstream 2159835 35664143 ~ 35666041 (+)
trnac-gca_18 NA other downstream 2458231 35962539 ~ 35962610 (+)
fezf2 fezf2 other downstream 3198947 36703255 ~ 36711295 (+)

Expression


Co-expression Network