arpc4l (arpc4,LOC103358720)


Basic Information

Item Value
gene id arpc4l
gene name arpc4,LOC103358720
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8233082 ~ 8236649 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798532.1
GCATCTTTTCTGGTTTGTGGGGAAATCCGTGTCTTCAAAAGAAGAGCTAAATGAAAACCTAGCGCACCCCATTTGTACCAAACGATGTAGGATTTACGGAAGAGGAGTCCCAGGCGTGGCTGAGGAACTTCCGTCTTTTACAGCACGAAAATGACAGCGACTCTGCGCCCCTACTTAAACGCTGTGAGGGCCACATTGCAGGCAGCCCTCTGTCTGGAGAACTTCTCCTCTCAGGTGGTGGAGCGGCACAACAAGCCTGAGGTGGAGGTCAGGAGCAGTAAGGAGCTGCTACTTCAGCCTGTGGTGATCAGCCGTAATGACAAGGAGAGGGTTCTCATCGAGGGATCCATCAACTCTGTCAGAGTCAGCATTGCTGTCAAACAGGCTGATGAGATTGAGAAGATCCTGTGCCACAAGTTCATGCGCTTCATGATGATGAGAGCAGAGAACTTCTTCATTCTGAGGAGGAAACCAGTAGAgGGATACGATATTAGCTTCTTGATCACCAACTTCCACACGGAGCAGATGTacaaacacaagctggtggacTTTGTCATCCACTTCATGGAGGAGATCGACAAGGAGATCAGCGAGATGAAACTGTCCGTTAATGCCAGGGCCCGTATCGTCGCTGAGGAATTCCTCAAGAACTTCTGATGACGGTGTTTGTCCCACACAAGCTTATAAAAGGCTCCATGGGCCAATCAGCACAAGAGTGGAGTAAGCAGCCAATCAGCAAGGAGATGAGAGGAAGATGACTAATCCGGCGATGACACCCTTTGCACCCGTCTCGTGTATTTCCCTGTACTCATGAATATCAATGACtgtatataatgaaatattgacCAGTTTCATTTTCAGCCACTTAGAACAAATCCCCAAACAAAGGCGGGTCCTTAAAGTATTAAACAAGTTGATAGCCATGAATACAGGGGCATTGAGAACGTGTTGTTGCAAATAAAACAGCcaggtttttgtattttgtgtaagAGTCTGCGTGTTCTGTCATTGCCGTTTTCAAATTTGTCTTCAAAATGTCCCTGTTCAGGAAACCCGTGTTTGTGGAAAGTGGTCTGTGTGGCTTTTCATCACTGACATGGAGCGAGAGCTGTCCGTAAAGAAGCCACCATGTATGAAAATAATGAAAGATAATAAAACTCAGTTTTATACCGTTGGTATTCCTAATTAA

Function

symbol description
arpc4 Predicted to enable actin binding activity. Predicted to act upstream of or within Arp2/3 complex-mediated actin nucleation and actin filament polymerization. Predicted to be located in actin cytoskeleton; cell projection; and cytoplasm. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC4 (actin related protein 2/3 complex subunit 4).

NR:

description
actin related protein 2/3 complex subunit 4

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05755 ARPC4; actin related protein 2/3 complex, subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798532.1 True 1189 mRNA 0.46 6 8233082 8236649

Neighbor

gene id symbol gene type direction distance location
LOC120557172 rbm38,LOC104939027,LOC101475440,LOC103365886,LOC107102025,LOC107384941 coding upstream 20244 8202280 ~ 8212838 (+)
rae1 rae1 coding upstream 32395 8191703 ~ 8200687 (+)
LOC120556871 NA coding upstream 56034 8170682 ~ 8177048 (+)
LOC120557574 LOC104939084,LOC103365882 coding upstream 90135 8140234 ~ 8142947 (+)
cdh4 LOC102194679,LOC102298797,LOC100702438 coding upstream 117051 7885752 ~ 8116031 (+)
si:dkey-202e22.2 LOC104952071,LOC103375511 coding downstream 92666 8329315 ~ 8334854 (+)
hmces hmces coding downstream 214052 8450701 ~ 8453316 (+)
rpn1 rpn1,LOC107091506 coding downstream 229951 8466600 ~ 8474022 (+)
gata2a LOC103359878,LOC102204047,LOC100705840,LOC101487525,LOC102779036 coding downstream 246541 8483190 ~ 8496659 (+)
trnae-cuc_4 NA coding downstream 380349 8616998 ~ 8617069 (+)
G36745 NA non-coding upstream 8310 8224258 ~ 8224772 (+)
G36728 NA non-coding upstream 84853 8147927 ~ 8148229 (+)
G36727 NA non-coding upstream 86819 8144541 ~ 8146263 (+)
G36649 LOC104950789,LOC103358841 non-coding upstream 480445 7699642 ~ 7752637 (+)
G36638 NA non-coding upstream 569208 7662944 ~ 7663874 (+)
G36754 NA non-coding downstream 2814 8239463 ~ 8244446 (+)
G36820 NA non-coding downstream 168595 8405244 ~ 8407693 (+)
G36826 LOC100705312 non-coding downstream 181655 8418304 ~ 8419581 (+)
G36827 LOC100705312,LOC102203484,LOC101465335,LOC104933013 non-coding downstream 185524 8422173 ~ 8425531 (+)
G36836 NA non-coding downstream 208743 8445392 ~ 8445591 (+)
G36744 NA other upstream 4362 8227762 ~ 8228720 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 926739 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 960714 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 1045868 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 1594559 6635280 ~ 6638523 (+)
prickle2b prickle2 other downstream 1523584 9760233 ~ 9856656 (+)
G37197 NA other downstream 2068538 10305187 ~ 10309996 (+)
glrx glrx other downstream 2151259 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 2760581 10997230 ~ 11012909 (+)
G37525 evc2 other downstream 3115429 11352078 ~ 11352387 (+)

Expression


Co-expression Network