tmf1 (tmf1)


Basic Information

Item Value
gene id tmf1
gene name tmf1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8798373 ~ 8810394 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798534.1
GAAAGGAAGTAGCGAAGAGGCTAATGCTAGTGGGGATACAAGTTGCCATCGACCAAAACAAACGATGACGGCCGAGCAAAGGAGCCGAAAAAAAGCTTGGATTTAACATGGGGATGATTTTGCTTTGACCGTTGTGGCAGAGTTATATACGGTATTAGAGATACCTGTATTGCTACATGAGATATGCGATTTTGAATGCCAACTGGCCAGTTTGAAAACTGTAGCTAACTGTATTACGTTACTGGGATTAATGCTGTCCCTGTATTTACAGTTTTGCTAACTAGCTAAGTGGAAGCTAGCTGTCAACAAAGCTTTTCTGGACAGAACAACACATTGCGAAATATTGTTCGCACCAGGTTATCGTTGATAACGACAAATGCAGAGACAGTTCAAGTTTCTCTGCTTTGTGTGGTAACGCCAAATTCCCTTTTTAAATCCGTGTGACAATTTATGAACTTGgtgatagctagctagcctaaCAGTCAAAATGAGTTGGTTCAACGCATCTCACCTGTCCAGCTTCGCTAAACAAGCTTTAACAACAGCTCAGAAGTCAATCGACCGAGTTCTGGACATCAAAGAAGAGGACCAATGGGGTGACACAGTTGTAAAGCCCTATGATGATGTTACAATACCGGGGAAGCTGTCATTAAGTGGAGGATGGGGAATGACGCAGTGGGAAGCACCCCTTGAAGAAAAGACCaccactcctcctccttcctctgagGCCATTACTACTCCTGTTACTCGCACAGTTGTGGATGAATCCGAAAACTTTTTTAGTGCCTTTCTGCCACCTGGAGACGTACAAGGTGGCACCAACACCCAGGTAGTGTCTGTACCCCCTACTAAGTCTCAAATAAGGCCTCaggagaaggaaaagaaaaacattgagGCTGTGGCACAAAAAGAAGTAGAGACTCAAAATTCAGCACCTGCGGATGAGAGTCAAGAGAATCAGACAGTTGCTGAGAGCCAGCCAGTTGAGCTTGAGTCCTCACCAACAGCACCGTATGCAGACACTATCCTCCTGCAGCCAGTTTCCCCTGCTTCTTCTTCCATCGATCTTCCTTGTAACCCTGACAGCAAAAAAAGCAGTGTAAAAACAGATGTTAGCTCTCCAGTTTCTGTAGACTCAAAAACGGAGCTGTCACAGACAGCATCAGATCACGAGGTTGAGCAGGATACCACAGATTCATCTGAACCTGCTGCTGTTACTTCTGAGCCTAAGAGCTCTACACCTTCTGATCCTTCGCCCTCCCCGTCCTCTAAGGGAGTTCTCATAGAGCATAAAGACTCAAAGGTGGAGGACCGTCAAAATGACACCCCCTCTCCTCCAGTCAGCGCTTTCTCCTCGGGAACCTCTACCACCAGTGACATTGAAGTGCTTGACCATGACTCTGTGTTGAGTGAGAGCTCAGCCAGCTCCAGACAAGAAACAGGGGAGAGCAAGGCTGGCCTTCACCTAATGCAGGGCTCCTTCCAGCTTCTCACTGCCTCCACCTGTGGAGATTTCCCCCGTCTGGAGGACTATTCCAAACTCACAGAGAGCAGCGGCTCTTCCTCGGATGCATTTGAGCGCATAGATTCATTCAGCGTGCAGTCATTGGATAGCCGGAGTGTCAGTGAGGTTAACTCGGATGATGAGATCCCTGGGAGTCGGACGCTAGCGTCTGTCACTGCAGGCCCTCCTTTAACAGTGTCATCAGCTGTATGTCAGAAGCAGgaagatggaggagaggagaaggagaaggagaatgagaaggaggaggaggaggaggaggaagaggaggaggaagagggctTTACTGAAACAGTGAGGGAGCAGTCGCTGGATGAGATGGAGGAGAGTGGACGGAGTGCGACACCTGTTAATAGTGAGCAGCCTGAAGAGTTGACAGAACAGGAACAGGAATCTGAGGCTAACCCACTGTCTGGTCCCACCTCCAAAGCTGAAGAACAGATCACACCTCCAATCACTGAAGAGATGAGAAGTGTCTCAACAGTTCAGATTTTGGAGCTTCAAAAGGTTATTGACGACTTGTCGGGCCGCCTTGAGAAGAGAGAGTCTCAGCTGCTGGCAGTCAGCAAAGACAAGGCCAGGCTGGAGGAGCAGTGTGACAATCTCAAAGATGAAGTGTTAAGCCTGAAGGAGGAGAGCTCCACTGTTCAGTCCCTAAAGGAAGAGTTCACCCAGCGCATAGCAGATGCGGAGAGGAAGGCTCAGCTGGCCTGCAAAGAAAGAGACATAGCCAAGAAGGAAATAAAGGGTTTGCGAGAAGAGCTTTCTACAAGACTTCACTCCAGTGATACAATGGAGATCATCAAAGAGAAGGAAGAACAGATCAGAGGCCTGCTGGAAGAAGgtgaaaagttgtccaagcagcagctgcagcacagcaACATCATCAAGAAACTGCGtgggaaggagaaggagagtgACGCAAGGATGACCAAGCAACAGAGGAAAATcaaggagcaggaggaggagctcAGGCAactgcagcagGTTCTAGATGggaaggaggaggtggagagacAGCACAGGGAGAACATCAAGAAGCTGAACGCTGTGGTGGAGCGGCAGGAGAAGGAGCTGAGCAAGCTGCAGGCAGAGTCTGAGGAGCTGCAGGAGAAGAACAGGAGCCTCCAGGCTGCTCTCGACAACTGTTACAAGGAGCTGGCAGAACTTCACAAGGCGCATGTCAGCAGGACCAGTGAGGCTGAAGAAGCAGCTCTTAGCAGGGAAACACAGGCCAAGGAGCAGCTGAGCCTGGCTTATGAGAAGGCCCAGGATGAGGCCAGGATGCAACAGGAGGCTCTGGCCAATCAGGTGGCTGACCTGAGACTGGCTCTGCAGAGAGCTGAGCAACAGCAAGCAAGGAAAGAAGATTATTTAAGGGAGGAGATCAGTGAGCTGCAGCAGAGGCTTCAGGAAGCAGAGACTAGGAACCAGGAACTCAGTCAGAGTGTTACTTCGGCAACACGGCCCCTACTGCGACAAATTGAGAACTTACAGGCCTCATTGGGCGGACAGACGGCATCCTGGGAAAAACTTGAGAAGAACATCTCTGATAGACTAGCGGATGCCCAGGCACAGTTGGCCGTTGCTGTGGAAAAGGAGCGATCAGCAACAGAAGACCTTCTGTCCATCAAGTCCCAGCTGGCCTCTCTGGAGTCCCAGAATTCCCTGTTACGCCAGGAGAAGGCCCGGCTCCTGGCGCAGCTGGATTCTGAGAAAAACAAGAGAGAAAAACTGGAGGATGAGAGTAGCAGGGAGCATGTTGATTTGGAAAATCTGAGAGGAGAACACATTCGCATGCTAGAAGAGGCCAAGAAAGAAAAGCTGCTGCTGACCAATCAATTAGAGATGGAGAAGATGAAGGTGGagcaagagaagaagaaatgcTACTTGGCACATGAAGCACTCAAGGAAAAGGAGCGAAAGGCTATGACCCACTCTGTAGGAGAGGCCCCAGCCTCCTCCACACCCTCCTTGTCCCGCTCTAGCTCCATCAGTGGGGCAGACAATGCTGGTCTACATACCTCTGTTCTTTCCCAGGATGACTGTTTAGACCACTCTCTAGGTACAATGACCATGTCTATGTCGATGAGCGGGACCAACCTGTACGAAGCCGCCAGGCTGTCTGGAGGCTCCAGCGTCATAGAGAACCTCCAGTCTCAGCTCAAACTCCGAGAAGGAGAGATAGCACAACTGCAGCTTGAGATCTCCAGTCTAGAGAGGAGTCGTTCTGTGATGGCAGAAGAGCTGGTCCGACTCACCAATCAAAACGATGAGATGGAGGAGATGGTGAAGGACATCCCCAAGTTGAAAGTTCAACTCAAGGATCTGGAGCAGAGGCACAACACTATCCTGCAGATGTATGGAGAGAAGGCTGAagaggcagaggagctgagactGGACCTTGAAGATGTGAAGAACATGTACAAAATCCAGATTGATGAACTCCTGAAGAACCAGAAATAATTCACTGAACTGTGCTACTTTTGGGACACTCCCAAACAAATCATTTGACCATCTCAGCCACACATTCACAGACAAAAAGGTAGAGCAGAGAATTTAAATGTAATCActgttaaaagaaaattattttatctttatccattttatttttattgattatGGCATATTTTATTTAAGTGGGAATGTTGGGTTTATGCAAAATATACAATGTATTATTACAGAACCAATATGAAGGATAGCCAGAGTTCATGATTTGGGTGTCTATTTGAAATCTTTGGGACTTGGTCATGATTAAACATTTTACATAGTATTGTATAGACAGTTTCTAACTGTAGGAGATGGTCATGGTTTTTTGCACTATACAAATCCATCCTTGTTTATTTCTTAATGCATAATCAGAATGGtttaagaaatatataaaaatattgtacAGAGAAATTGATGTATTGTTCTCAACTCCTTAGAAATCACAAAAAGTGGTTTAGACCTGTGAGTAGTCTGTGATTGAAATCCTGAAGATTGGATTTTAAACCttataaatatgtaaatgaaTAAACCTTTATTTGGGTGGTGAACACTACTGATATTCTCAATTTGAATTGTGTGGATTCCACAGAAGTCATTATTTTAATTGCATTCATAAAAAATACTACATTATCTTAATGTTGCACAAAAGTCTCCAAATAAATCTCCATGTCCGGAACAATTTCAAA

Function

symbol description
tmf1 Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human TMF1 (TATA element modulatory factor 1).

NR:

description
TATA element modulatory factor isoform X2

GO: NA

KEGG:

id description
K20286 TMF1; TATA element modulatory factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798534.1 True 4698 mRNA 0.47 17 8798373 8810394

Neighbor

gene id symbol gene type direction distance location
uba3 LOC104944983 coding upstream 334 8791740 ~ 8798039 (+)
trnae-cuc_8 NA coding upstream 56596 8741706 ~ 8741777 (+)
trnae-cuc_7 NA coding upstream 59335 8738967 ~ 8739038 (+)
trnae-cuc_6 NA coding upstream 87293 8711009 ~ 8711080 (+)
trnae-cuc_5 NA coding upstream 156272 8642030 ~ 8642101 (+)
eogt eogt coding downstream 427 8810821 ~ 8827379 (+)
trnar-acg_14 NA coding downstream 5931 8816325 ~ 8816397 (+)
trnae-cuc_12 NA coding downstream 11843 8822237 ~ 8822308 (+)
trnae-cuc_13 NA coding downstream 12266 8822660 ~ 8822731 (+)
tafa4b LOC108244092,LOC101483849,LOC102775681 coding downstream 21870 8832264 ~ 8872166 (+)
G36900 NA non-coding upstream 138096 8624721 ~ 8660277 (+)
G36890 NA non-coding upstream 185386 8612296 ~ 8612987 (+)
G36887 LOC101487045 non-coding upstream 187285 8610361 ~ 8611088 (+)
G36836 NA non-coding upstream 352782 8445392 ~ 8445591 (+)
G36827 LOC100705312,LOC102203484,LOC101465335,LOC104933013 non-coding upstream 372842 8422173 ~ 8425531 (+)
LOC120558080 NA non-coding downstream 75379 8885773 ~ 8940038 (+)
G36988 NA non-coding downstream 229069 9039463 ~ 9039769 (+)
G36991 NA non-coding downstream 419686 9230080 ~ 9230363 (+)
G36990 NA non-coding downstream 420070 9230464 ~ 9230954 (+)
G37023 NA non-coding downstream 549110 9359504 ~ 9410661 (+)
G36744 NA other upstream 569653 8227762 ~ 8228720 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 1492030 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 1526005 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 1611159 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 2159850 6635280 ~ 6638523 (+)
prickle2b prickle2 other downstream 949839 9760233 ~ 9856656 (+)
G37197 NA other downstream 1494793 10305187 ~ 10309996 (+)
glrx glrx other downstream 1577514 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 2186836 10997230 ~ 11012909 (+)
G37525 evc2 other downstream 2541684 11352078 ~ 11352387 (+)

Expression


Co-expression Network