LOC120557897 (LOC104966248,LOC103368476,LOC102798401,LOC101469442,LOC105924440,LOC106583184)


Basic Information

Item Value
gene id LOC120557897
gene name LOC104966248,LOC103368476,LOC102798401,LOC101469442,LOC105924440,LOC106583184
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16733386 ~ 16735306 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798588.1
ATGACATGTCCACAGCGGCCAACAGATCCGAGACACAGCTCAGCTAAGTGGAAATGGAGGACCAGAGATTAAAAGACAAGAGACCAGCAATCGAATTTATGGAAGTCAAAGTGGACATACAATCTGAAGATCTGAATTCCAAACACAGTGAGACAAGGCTTCTGATTCACGACAGGGATCCCAAAAGAGTCAACAAGAGTCTTAAGgTCACGTTTGAGGATGTGATTGCAGAGCCTCCCTCGGTGCGGAGCTTTGATAAAGTGTGGTTGTGGAGTCACGCCCTGTTTGAGGTGTCCAGACTGTGGATCTACCGCCTCATCTCCCTTCTTCTGGCAGTGCCGGTCTCACTGGCAGCAGGGATCCTCTTCGCTGTGCTCAGCTGCCTTCACATCTGGTTAATCATGCCCTGCGTGCAGCTGCTTCTCATCAACATGCACTGGGTTCAGACTGTGTGGGGCAGCATACTGAACATTCTCATCAGCCCCTTCTTTACCAGTATTGGAAAGTGCTGTCGTCGAATCACCATCCATCTGGCAAAAGATGAAGACagataaaaacaataaagtatataagtaaatgtttggttaaaacatagaaaaaagcAAGTTGCATACTACTAATTCCATACAGGTAAATTACAGGTACAGGTAAATTATAAAATGCATCATAATTGtgtgtgattattttgtattattgctCAATTTGTCCCTTTTGTGATGATATTGATGCATACAGCTAACTCTAAGCCAGGGCCGGAACAAGCATGTGTTGATAGAATATGAGGGGTAAATGGTACTAAAACTATCTAATGCACAGTTACAGAGAAAAATAGAAAgcaaatatgtacagtataaacCGTTGCAATTAAATCACAAAAGTATCTACTGTACCTATAAACCCAGAGATTCTGGCGTGTAAAGCAAAACAGACCAACAAGCATTGAAAGCTCTGGATGAACAAGTGTGTATATGTAAGaaaggctaatttatcacattaataatattaatatggaTGTCATAGCA

Function

NR:

description
PREDICTED: caveolin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798588.1 True 1022 mRNA 0.41 3 16733386 16735306

Neighbor

gene id symbol gene type direction distance location
gpr61l LOC104930496,LOC103368477,LOC104957521,LOC100694581 coding upstream 3370 16724159 ~ 16730016 (+)
parp3 parp3 coding upstream 10569 16718280 ~ 16722817 (+)
grm2a LOC103368479 coding upstream 17159 16683808 ~ 16716227 (+)
tex264a tex264,LOC102797020 coding upstream 51870 16606451 ~ 16681516 (+)
fancd2 fancd2 coding upstream 127971 16584412 ~ 16605415 (+)
cav3 cav3,LOC107093348 coding downstream 2730 16738036 ~ 16741512 (+)
thumpd3 thumpd3,LOC102800238 coding downstream 161764 16897070 ~ 16906824 (+)
LOC120557149 LOC104950923,LOC103362905 coding downstream 172536 16907842 ~ 16916563 (+)
LOC120557990 LOC103362904,LOC104928138 coding downstream 182515 16917821 ~ 16962625 (+)
wdr77 wdr77,LOC102777617 coding downstream 265868 17001174 ~ 17004437 (+)
G39143 NA non-coding upstream 153664 16579085 ~ 16579722 (+)
G39134 NA non-coding upstream 177181 16552684 ~ 16556205 (+)
G39113 NA non-coding upstream 223201 16503438 ~ 16510185 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding upstream 481661 16235014 ~ 16251725 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding upstream 537602 16195379 ~ 16195784 (+)
G39195 NA non-coding downstream 47105 16782411 ~ 16782618 (+)
G39196 NA non-coding downstream 49442 16784748 ~ 16785065 (+)
G39197 NA non-coding downstream 50525 16785831 ~ 16786051 (+)
G39210 NA non-coding downstream 83440 16818746 ~ 16823256 (+)
G39302 LOC102778475,LOC101478284,LOC100692415 non-coding downstream 312629 17047935 ~ 17048365 (+)
G39116 NA other upstream 189806 16517536 ~ 16543580 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other upstream 298157 16433238 ~ 16435229 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 575024 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 673056 16049678 ~ 16060330 (+)
ccdc174 ccdc174 other upstream 759149 15965402 ~ 15974237 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 229311 16964617 ~ 17046696 (+)
G39351 NA other downstream 376807 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 457845 17193151 ~ 17198217 (+)
LOC120557637 minos1,LOC103357934 other downstream 636177 17371483 ~ 17377560 (+)
G39581 LOC104949003,LOC103357913 other downstream 872624 17607930 ~ 17609216 (+)

Expression


Co-expression Network