cdh4 (LOC102194679,LOC102298797,LOC100702438)


Basic Information

Item Value
gene id cdh4
gene name LOC102194679,LOC102298797,LOC100702438
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7885752 ~ 8116031 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798604.1
GACGGTCATTCACTCAGCACCCGAAAGAGAAGAAACAGGGATCCGGGAATTACTGAGGTTAATTTGGCGCAGGAGACTCATCTctttcgctttttttttttacccccaaCAAGCGATTTTGCAAAGATGAAGGTTGGCTGCATCATCCTGGCTTGCACCTTACTTGTGGGCACATCCTCGGGGAGTAAGGCAGTCCAGCCCCTCAAACCCCCATGCAGACCAGGCTTCTCCCAGAACTTCTACACAGTGATTGTCTCGAGAGACGTACTGCACGGTCAAAGCATTGTCAAAGATACTACCCTGTCCAGTGAACGTGTGAAGTTTGAGGATTGCCAGCGCAGCAGAGAGGTGGGCTTTGTCAGCAGCGACCCCAACTTCAGTGTGAGGCCCGATGGGTCGGTGTATGCCGAGCAGGAGCTGGCCAACCTGTCAGAGCCCGTCCAGTTCATGGTGACGGCCCGAGGGCTCCATGACCCACACATCTGGGAGACCACCGTTAAGCTAGCCCTGGCCGGACATCCTCATCCTTTAGCCCTGACAAAGGGTGGCATTGAAGAAATGCTGTCAAGAGTCTGGGACTCTCAACCCAGAGTTATCAAGTTTCCTCGAAAACATCAGAGGAGCTCCTCTGCCAATGGGCTAAGGCGACAGAAGAGAGACTGGGTCATCCCGCCTATCAATGTGCCTGAAAACTCCAGAGGACCCTTCCCCCACATGCTTGTCAGAATCCGCTCAGACCAGGACAAGGCTGTTGGCATCCGCTACAGCATCACGGGAGCAGGCGCTGATCAGCCCCCGAGCGGGATCTACAACATAGACCCCATCAGCGGCAACATGTTTGTCACGCAACCCctggacagagaggagagagcctCCTTCCACCTGCGAGCCCATGCAGTGGACATGAATGGTAACCAAGTGGAGAACCCAATCGATCTATACATTTATGTGATCGACATGAACGACAACAGACCGGAGTTTCAGAACCAGGTGTACAACGGCTCGGTGGCTGAAGGGTCCAAACCAGGCTCGTCTGTGATGCAGGTGACAGCCACCGACTCGGACGACTCCACCACAGCTAATGGCATGGTGCGCTACCGCATCCTCTCACAGACTCCCCACACCCCCATCCCCAACATGTTCACCATCAACAGCGAGACTGGAGACATAGTTACAGTGGCAGCCGGCCTGGACAGAGAGaaagtgTCCCAGTATACCATCATTGTCCAGGCCACTGACATGGAAGGCAACTTGAATTTTGGCTTGTCCAACACAGCCACAGCCCTTATCAGCATCACCGACATCAACGACAATCCCCCAGAACTGACAGTCAGAACGTTTTCAGGGGAGGTGCCAGAGAACAAGGTGAATGTGGTGGTGACCAACCTCACGGTGGTGGACAGGGATCAGCCCCACAGTCCCAACTGGAACGCCGTCTACCGCATCGTCAGCGGAGACCCCTCTGGACACTTCACCATCCGCACCAACCCCATCACCAATGAGGGCATGCTGACAGTGGTCAAGCCGGTGGATTTTGAGATGAATCGTGCCTTCATGCTGACCGTGGTGGTTTCCAACCAGGCCCACCTGGCCAGCGGCATCCAGTCTTCTCTTCAGTCCACAGCAGGAGTCACCATTTCGATTCAGGATGTGAATGAGCCGCCCGTCTTCCCCGTCAACCCTAAGATGATCCGCTTTGAGGAAGGTGTGCCAGCAGGGACCACCCTTACTGTGTTCGCTGCTCAGGACCCTGACCACTTCATCCACCAGATTGTCAGGTACTCCAAGCTGTCCGACCCGGCTAACTGGCTGAAGATCAACAGGACCAATGGTCAGATCACTACCATGGCCCTGCTGGACCGAGAGTCCATGTACGTCAAAAACAACGTGTACGAGGCCACATTCCTGGCATCCGACAATGGTAAGTCCGGCTCGCCTCAAGCCAGCGGGACAGGAACTCTCCAGATCTACCTGATCGACGTGAACGACAACGCGCCGGTGCTGATACCCCGGGAGGCCCAGGTGTGCGAGCGCGCGCGCCCCAACTCCATGGTCAACATTACAGCCTCCGACGCTGACGCCGACCCCAACGTAGGGCCCTTTGTCTTCGAACTGCCTTCTTTTCCTGCAAGCGTTCGCCGCAACTGGACTATCTCCCGACTCAGCGGTGACTATGCTCAGCTGAGGCTAAGGATTCCTTACCTGGAGGCGAGTGTGTACGAGATCCCCATCATCGTGTCCGATTCAGGGAACCCTCCTCTGTCCAACCGCTCTGTGATTAGAGTCAAAGTTTGTCCCTGTGACAATAACGGAGACTGCAGCGCCACAGGGGCTGTGGCAGCCGCCGGCCTCGGCACCGGGGCCATCATCGCGATACTCATCTGCATCATCATACTGCTCAGCATGGTTCTGCTGTTTGTGGTGTGGATGAAGCGCAGAGAGAAGGAGCGGCAGGCGAAGCCCCTGCTGATCGACCCTGAGGACGACGTCAGAGACAACATCCTCAAGTAtgatgaggagggaggaggagaggaggaccaGGACTATGACCTGAGCCAGCTGCAGCAGCCCGAGTCTTTAGACCACATCATCAATAAGCCGGCGGGGGTGCGCAGGGTGGACGAGAGACCTGTGATTGCTGAGTCACAGTATCCCGTCAGACCCAGTCTGCCCCATCCTGGAGATATAGGAGACTTCATTAATGATGGTCTGAGGGCAGCAGACAACGACCCCACAGCTCCTCCCTACGACTCCCTGCTGGTGTTCGACTACGAGGGCAGCGGTTCAACCGCCGGCAGCGTCAGCTCGCTCAACTCCACCAGCTCAGGGGACCAGGACTATGACTACCTCAACGACTGGGGCCCTCGCTTCAAGAAGCTGGCCGACCTCTACGGGGGAGGGGACGATGACTGAGAGCGGAGCGGGGGGCCTGGGTGGGGCTGCGGCAGGGGTCGGGAGAGGCGGGGTCGGTTGGATGGACGCTCCTAGAAACCACTGGCAGGAGCCAAGAACATGACGCAGTCTCCATGGTAGACGTGTGAGGAACAGATCCTTACGTGAGCTGTGTTAGTTTGCTCACAGGGACCGAACCCGCAAAGATGAAGTTCCACTGCAACGCAACTGTATTCTGGCTTTATATTTTGTAGTGGCGAGTTTGTagtgtgatgtttttttcttcttttttttcctctttgttGTTCTCTCACCGTGCTGGACCCGGAGCTCTCTGGGGACGAATCAAGGCGGTCGTGAGAGACACGAGTAGTGAATTTGTGCTTTGATTGATTTTCAAAACGAAACCATCTCTTGCTTTAGTCTCACGCTGAAGAGAATGTTTATGCGAAGACgctctctgactctctctttcactctgtcaaCTTGAATTTCCTTAGAACAGAAGCACTGTCTTTTTTATAAAGTGCCTTTtgtggtgtgtttttgtatCAGACTCCTGCTATCTCAGGATCGGTTGCCATTCGTGCAGTACAGTGGAGGCGTGTTCTCTTGTCGCCCCCCCCCTGTGCTCCTCAAACCAGCCCTGCCTGTCAATTTCCTTTCCCCTTTACAGTGGTGCAGATTACAAACCCCAGCAGCCAGTCCCAGGAGAGAAGGACGCATCCAGGGCAGACTTTCGGACATCATAACCCAATGAATTATGGCCTAAAAGAAGCCAAtaacagttgttgttgttgttgttgttgttgttgtggggaAGACAACACTCTTCTCCAAGGACCTGCTCAGTTTGACTTTCACAAGCATCACCTGTCGACACACTGACATCGTGTGAGACCATTTTATACATGCGGGGGTTTTCTAATTTAGTGGAGAATGCCTGCCTTTCCTCTGTGGACTCATGCGTTTAGGAGCCTTTATGTTGAGATGCTTGCCTGCCCTGTATGGTTTTGTGTTGCTTTCTCCACAGTGTAAAGCTTATGGCATGATCTGATTAGTCAGACAGTTTAAGAAAGTGGAACTTGAAATGACTTGGAACAAAGGCATCTAAGAAAGGAATTTTTTTTGTCGCCTTGAACATTCCCGTTTTTTATAGGCCAACAAAACTATTAAAAGgtgcatgattttttttttctcaaaatgttttaCTCAAAGCACTTGTTACTATGTGGTGAGAATGTGAAAATAGTCAGCGGAAACTATATGAATATACTCTGTATAAAGAcactgagaaaataaaaaacctgTAAGATACCTATTTTTGAAGTATTGATGACATAACAGTTGCTGCTCTTTCTCTAGCTCTTCATTGGGCTTAGGGGATTTTTTGGCCCGTTCATTTTTAATATGTGgatatttttgtttctttgtcttcTGTTGAAGCATAATTCCATTTTTAAGACGCCTGCTTATACatgttttgtttcagttttgctcttcttttcttcttatgagattgtattctttGTTATACTCCTTTTATATGTGAAAACACAGCCCAACCCTTTTCACTCTGTAATGTCTCTGACAGACGTGTTCCTTCTGTTGGCCTCTGGCCTCGGGGCAGTGGAAGGTTCATTAGCCATGCCTGCTGATAGTTGTTCTATTATTCAGTGTCCTGGgattattttattcattcatctAGATACTGGATGTGTGCttcagaaaataaacaaaacttgttttgaaaa
>XM_039798605.1
GACGGTCATTCACTCAGCACCCGAAAGAGAAGAAACAGGGATCCGGGAATTACTGAGGTTAATTTGGCGCAGGAGACTCATCTctttcgctttttttttttacccccaaCAAGCGATTTTGCAAAGATGAAGGTTGGCTGCATCATCCTGGCTTGCACCTTACTTGTGGGCACATCCTCGGGGAGTAAGGCAGTCCAGCCCCTCAAACCCCCATGCAGACCAGGCTTCTCCCAGAACTTCTACACAGTGATTGTCTCGAGAGACGTACTGCACGGTCAAAGCATTGTCAAAGATACTACCCTGTCCAGTGAACGTGTGAAGTTTGAGGATTGCCAGCGCAGCAGAGAGGTGGGCTTTGTCAGCAGCGACCCCAACTTCAGTGTGAGGCCCGATGGGTCGGTGTATGCCGAGCAGGAGCTGGCCAACCTGTCAGAGCCCGTCCAGTTCATGGTGACGGCCCGAGGGCTCCATGACCCACACATCTGGGAGACCACCGTTAAGCTAGCCCTGGCCGGACATCCTCATCCTTTAGCCCTGACAAAGGGTGGCATTGAAGAAATGCTGTCAAGAGTCTGGGACTCTCAACCCAGAGTTATCAAGTTTCCTCGAAAACATCAGAGGAGCTCCTCTGCCAATGGGCTAAGGCGACAGAAGAGAGACTGGGTCATCCCGCCTATCAATGTGCCTGAAAACTCCAGAGGACCCTTCCCCCACATGCTTGTCAGAATCCGCTCAGACCAGGACAAGGCTGTTGGCATCCGCTACAGCATCACGGGAGCAGGCGCTGATCAGCCCCCGAGCGGGATCTACAACATAGACCCCATCAGCGGCAACATGTTTGTCACGCAACCCctggacagagaggagagagcctCCTTCCACCTGCGAGCCCATGCAGTGGACATGAATGGTAACCAAGTGGAGAACCCAATCGATCTATACATTTATGTGATCGACATGAACGACAACAGACCGGAGTTTCAGAACCAGGTGTACAACGGCTCGGTGGCTGAAGGGTCCAAACCAGGCTCGTCTGTGATGCAGGTGACAGCCACCGACTCGGACGACTCCACCACAGCTAATGGCATGGTGCGCTACCGCATCCTCTCACAGACTCCCCACACCCCCATCCCCAACATGTTCACCATCAACAGCGAGACTGGAGACATAGTTACAGTGGCAGCCGGCCTGGACAGAGAGaaagtgTCCCAGTATACCATCATTGTCCAGGCCACTGACATGGAAGGCAACTTGAATTTTGGCTTGTCCAACACAGCCACAGCCCTTATCAGCATCACCGACATCAACGACAATCCCCCAGAACTGACAGTCAGAACGTTTTCAGGGGAGGTGCCAGAGAACAAGGTGAATGTGGTGGTGACCAACCTCACGGTGGTGGACAGGGATCAGCCCCACAGTCCCAACTGGAACGCCGTCTACCGCATCGTCAGCGGAGACCCCTCTGGACACTTCACCATCCGCACCAACCCCATCACCAATGAGGGCATGCTGACAGTGGTCAAGCCGGTGGATTTTGAGATGAATCGTGCCTTCATGCTGACCGTGGTGGTTTCCAACCAGGCCCACCTGGCCAGCGGCATCCAGTCTTCTCTTCAGTCCACAGCAGGAGTCACCATTTCGATTCAGGATGTGAATGAGCCGCCCGTCTTCCCCGTCAACCCTAAGATGATCCGCTTTGAGGAAGGTGTGCCAGCAGGGACCACCCTTACTGTGTTCGCTGCTCAGGACCCTGACCACTTCATCCACCAGATTGTCAGGTACTCCAAGCTGTCCGACCCGGCTAACTGGCTGAAGATCAACAGGACCAATGGTCAGATCACTACCATGGCCCTGCTGGACCGAGAGTCCATGTACGTCAAAAACAACGTGTACGAGGCCACATTCCTGGCATCCGACAATGGCTCGCCTCAAGCCAGCGGGACAGGAACTCTCCAGATCTACCTGATCGACGTGAACGACAACGCGCCGGTGCTGATACCCCGGGAGGCCCAGGTGTGCGAGCGCGCGCGCCCCAACTCCATGGTCAACATTACAGCCTCCGACGCTGACGCCGACCCCAACGTAGGGCCCTTTGTCTTCGAACTGCCTTCTTTTCCTGCAAGCGTTCGCCGCAACTGGACTATCTCCCGACTCAGCGGTGACTATGCTCAGCTGAGGCTAAGGATTCCTTACCTGGAGGCGAGTGTGTACGAGATCCCCATCATCGTGTCCGATTCAGGGAACCCTCCTCTGTCCAACCGCTCTGTGATTAGAGTCAAAGTTTGTCCCTGTGACAATAACGGAGACTGCAGCGCCACAGGGGCTGTGGCAGCCGCCGGCCTCGGCACCGGGGCCATCATCGCGATACTCATCTGCATCATCATACTGCTCAGCATGGTTCTGCTGTTTGTGGTGTGGATGAAGCGCAGAGAGAAGGAGCGGCAGGCGAAGCCCCTGCTGATCGACCCTGAGGACGACGTCAGAGACAACATCCTCAAGTAtgatgaggagggaggaggagaggaggaccaGGACTATGACCTGAGCCAGCTGCAGCAGCCCGAGTCTTTAGACCACATCATCAATAAGCCGGCGGGGGTGCGCAGGGTGGACGAGAGACCTGTGATTGCTGAGTCACAGTATCCCGTCAGACCCAGTCTGCCCCATCCTGGAGATATAGGAGACTTCATTAATGATGGTCTGAGGGCAGCAGACAACGACCCCACAGCTCCTCCCTACGACTCCCTGCTGGTGTTCGACTACGAGGGCAGCGGTTCAACCGCCGGCAGCGTCAGCTCGCTCAACTCCACCAGCTCAGGGGACCAGGACTATGACTACCTCAACGACTGGGGCCCTCGCTTCAAGAAGCTGGCCGACCTCTACGGGGGAGGGGACGATGACTGAGAGCGGAGCGGGGGGCCTGGGTGGGGCTGCGGCAGGGGTCGGGAGAGGCGGGGTCGGTTGGATGGACGCTCCTAGAAACCACTGGCAGGAGCCAAGAACATGACGCAGTCTCCATGGTAGACGTGTGAGGAACAGATCCTTACGTGAGCTGTGTTAGTTTGCTCACAGGGACCGAACCCGCAAAGATGAAGTTCCACTGCAACGCAACTGTATTCTGGCTTTATATTTTGTAGTGGCGAGTTTGTagtgtgatgtttttttcttcttttttttcctctttgttGTTCTCTCACCGTGCTGGACCCGGAGCTCTCTGGGGACGAATCAAGGCGGTCGTGAGAGACACGAGTAGTGAATTTGTGCTTTGATTGATTTTCAAAACGAAACCATCTCTTGCTTTAGTCTCACGCTGAAGAGAATGTTTATGCGAAGACgctctctgactctctctttcactctgtcaaCTTGAATTTCCTTAGAACAGAAGCACTGTCTTTTTTATAAAGTGCCTTTtgtggtgtgtttttgtatCAGACTCCTGCTATCTCAGGATCGGTTGCCATTCGTGCAGTACAGTGGAGGCGTGTTCTCTTGTCGCCCCCCCCCTGTGCTCCTCAAACCAGCCCTGCCTGTCAATTTCCTTTCCCCTTTACAGTGGTGCAGATTACAAACCCCAGCAGCCAGTCCCAGGAGAGAAGGACGCATCCAGGGCAGACTTTCGGACATCATAACCCAATGAATTATGGCCTAAAAGAAGCCAAtaacagttgttgttgttgttgttgttgttgttgtggggaAGACAACACTCTTCTCCAAGGACCTGCTCAGTTTGACTTTCACAAGCATCACCTGTCGACACACTGACATCGTGTGAGACCATTTTATACATGCGGGGGTTTTCTAATTTAGTGGAGAATGCCTGCCTTTCCTCTGTGGACTCATGCGTTTAGGAGCCTTTATGTTGAGATGCTTGCCTGCCCTGTATGGTTTTGTGTTGCTTTCTCCACAGTGTAAAGCTTATGGCATGATCTGATTAGTCAGACAGTTTAAGAAAGTGGAACTTGAAATGACTTGGAACAAAGGCATCTAAGAAAGGAATTTTTTTTGTCGCCTTGAACATTCCCGTTTTTTATAGGCCAACAAAACTATTAAAAGgtgcatgattttttttttctcaaaatgttttaCTCAAAGCACTTGTTACTATGTGGTGAGAATGTGAAAATAGTCAGCGGAAACTATATGAATATACTCTGTATAAAGAcactgagaaaataaaaaacctgTAAGATACCTATTTTTGAAGTATTGATGACATAACAGTTGCTGCTCTTTCTCTAGCTCTTCATTGGGCTTAGGGGATTTTTTGGCCCGTTCATTTTTAATATGTGgatatttttgtttctttgtcttcTGTTGAAGCATAATTCCATTTTTAAGACGCCTGCTTATACatgttttgtttcagttttgctcttcttttcttcttatgagattgtattctttGTTATACTCCTTTTATATGTGAAAACACAGCCCAACCCTTTTCACTCTGTAATGTCTCTGACAGACGTGTTCCTTCTGTTGGCCTCTGGCCTCGGGGCAGTGGAAGGTTCATTAGCCATGCCTGCTGATAGTTGTTCTATTATTCAGTGTCCTGGgattattttattcattcatctAGATACTGGATGTGTGCttcagaaaataaacaaaacttgttttgaaaa

Function

NR:

description
PREDICTED: cadherin-4-like isoform X1

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06797 CDH4; cadherin 4, type 1, R-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798604.1 True 4646 mRNA 0.51 17 7885752 8116031
XM_039798605.1 False 4637 mRNA 0.51 17 7885752 8116031

Neighbor

gene id symbol gene type direction distance location
LOC120557341 LOC106565946 coding upstream 116010 7762888 ~ 7769742 (+)
LOC120557338 NA coding upstream 134632 7728149 ~ 7751120 (+)
zmynd8 LOC103358838 coding upstream 158434 7709966 ~ 7727318 (+)
myh7ba LOC103358826,LOC104966023,LOC101480568,LOC102289245 coding upstream 436734 7434210 ~ 7449018 (+)
snai1a LOC104939346,LOC103358824,LOC108244374,LOC107385873 coding upstream 469472 7412789 ~ 7416280 (+)
LOC120557574 LOC104939084,LOC103365882 coding downstream 24203 8140234 ~ 8142947 (+)
LOC120556871 NA coding downstream 54651 8170682 ~ 8177048 (+)
rae1 rae1 coding downstream 75672 8191703 ~ 8200687 (+)
LOC120557172 rbm38,LOC104939027,LOC101475440,LOC103365886,LOC107102025,LOC107384941 coding downstream 86249 8202280 ~ 8212838 (+)
arpc4l arpc4,LOC103358720 coding downstream 117051 8233082 ~ 8236649 (+)
G36649 LOC104950789,LOC103358841 non-coding upstream 133115 7699642 ~ 7752637 (+)
G36638 NA non-coding upstream 221878 7662944 ~ 7663874 (+)
G36616 LOC103386327,LOC105417874 non-coding upstream 338717 7543986 ~ 7547035 (+)
G36609 NA non-coding upstream 353549 7531717 ~ 7532203 (+)
G36604 NA non-coding upstream 359789 7521180 ~ 7525963 (+)
G36727 NA non-coding downstream 28510 8144541 ~ 8146263 (+)
G36728 NA non-coding downstream 31896 8147927 ~ 8148229 (+)
G36745 NA non-coding downstream 108227 8224258 ~ 8224772 (+)
G36754 NA non-coding downstream 123432 8239463 ~ 8244446 (+)
G36820 NA non-coding downstream 289213 8405244 ~ 8407693 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 579409 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 613384 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 698538 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 1247229 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 1579609 6139463 ~ 6306143 (+)
G36744 NA other downstream 111731 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 1644202 9760233 ~ 9856656 (+)
G37197 NA other downstream 2189156 10305187 ~ 10309996 (+)
glrx glrx other downstream 2271877 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 2881199 10997230 ~ 11012909 (+)

Expression


Co-expression Network