rbpjl (rbpjl,LOC100707106)


Basic Information

Item Value
gene id rbpjl
gene name rbpjl,LOC100707106
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38734167 ~ 38784058 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798639.1
AGCCAGGgtcagcagacacagagctcCGAGCTGTCTCATCTTCATCCTGATGATACCGATCTAACAGCTGGACTCCGGAGCTGGAACTGGATCAAACTGTGGCGCAGAGTGACGATGGACCGGAGCAACACCCCCTCTTAATGTCAGCAGAGCCGATCATGGACGAGTTGGGCATCGCAGATCAAGGCAGGAGAGAAACCTCGAACACCCAGCCAGGATTCTCCCAGGCGGACCTCGCTCTCTTTtacccccctcctctctccccagacccgggcagcacgCTGACTCACCTGGGGACGCTGCTGGCCGGACACGACGCGCCGAGGACCGGCGGATGGGACAGGAGCCTGGACCTGGGGTTTCAAGGCTCCCAGTTACTGGGACCAACAAGGGAACCAGTAAGAGAAGCTCACGCAGACCAGAGTGTCACCATCCTGCACGCCAAGGTCGCTCAGAAGTCCTACGGCACCGAGAAAAGGTTCTTCTGCCCACCTCCTTGTGTTTACATCAGCGGCCATGGATGGAAAGTCATGCAGGACCATCTGAAAGCGGCTGGCTGCGGAGACTCTGTGTATCGAGTGTGTGGTTACATGTGTCTGGACAGCTCCAGTCAGTCTCAGGCCGACACATTCAAACTGGTCTTCGATGAGCAGCCAAACTCCAGGATGTTTGCCTGTGCCAAGTCCCTGTTCATCTCTGACCAGGACAAGAGGAAACACTTCTGCCTGTTGCTGCGACTCTTCTTGGGCAACAGACAGGAAGTGGGTTCGTTCCAGAGCCGGATGATCAAAGTCATCTCCAAACCCTCCCAGAAGAGACAGTCCATGAAGAACGCCGACCTGTGTATCTCATCGTGCTCCAGAGTAGCTTTGTTCAACCGTTTACGCTCGCAGACGGTCAGCACTCGTTACCTCTCAGTGGACAGAGGAGCTTTTATAGCCAGCGCCAGACAGTGGACCGCCTTCACCATCAccctggtgcaGGAGCAGCATGCTGACCGAAGGGACTTTGTGCCGAGCGAGGGCTTCATCTGTTACGGCCGTGTGGTCCAGTTAGTGTGCACTGAGTCTGGAGTCGCTCTGCCACTCATGGTGATCCGTAAGGTCAACAAGCAGCACGCCATCTTGGATGTGGACGAGCCGGTCTCTCAGCTCCACAAGTGCGCCTTCCAGTTCCGAGACGACCCACACTCCTACCTGTGTTTATCCAACGACACCATCATACAGCACCAGgcCCCGTCCAGCGGCAGAGACTCGGGCAGAGTGGTGCTGAACGACGGGTCCTGCTGGACCATCATCGGAGTGGAAGCGGTGGAATTCACCTTTAATCAGGGTCCCGCCTGCATCCAGACCCCAGTTACTCCTTTTCCTGTTCTGACCGGGTTAGAGgtgaatggtggAGGGCACGTTGCCATGTTGGAGATCCAGGGAGACAACCTCAGCCCTCATCTCAAAGTGTGGTTCGGAAACAGCGAGGCGGAGACAATGTTCAAGTCTCCCAAATCTCTGCTCTGCGTCGTCCCCGACGTCTCCGCGTTCAGCGACGGCTGGCGCTGTCTGCGGCGCGTCATCACCGTCCCTCTGTGTCTCATCCGATCGGACGGCCTGATCTATCGCACGGCCTTCAGTTTCACCTACACCCCCGAGCTCCAGCCGCCGCCGGCATCCATCCGGGGGGCGTCAGgaggagggaaaagagagggagggatggagggggaCGAGCACGACGACAGCCTGTTAGAGACCATCCACCAGGAGTTCACCAGAGCCAACTTCCACCTCTTCATGCAGAGTTAGCTCATTGAGTCCTCAGGTGAATGTTGGGAGCAAAAGTCTGATTATAAGCAAGAAACGGTTTTGGATGAACGCTGGTCTCGTGTCAATGAACTGTGTGCAACTTTTGCCCCATTCTGAACTACCGGAATATCAAGGTTTATTTATTGTCACGGATAGGGTTGCACAATGAAATTCAGTTGTAGTCCCTTTATGttacacaattaaaataaaaacaaacagaactgTG
>XM_039798640.1
tcCGAGCTGTCTCATCTTCATCCTGATGATACCGATCTAACAGCTGGACTCCGGAGCTGGAACTGGATCAAACTGTGGCGAGTGACGATGGACCGGAGCAACACCCCCTCTTAATGTCAGCAGAGCCGATCATGGACGAGTTGGGCATCGCAGATCAAGGCAGGAGAGAAACCTCGAACACCCAGCCAGGATTCTCCCAGGCGGACCTCGCTCTCTTTtacccccctcctctctccccagacccgggcagcacgCTGACTCACCTGGGGACGCTGCTGGCCGGACACGACGCGCCGAGGACCGGCGGATGGGACAGGAGCCTGGACCTGGGGTTTCAAGGCTCCCAGTTACTGGGACCAACAAGGGAACCAGTAAGAGAAGCTCACGCAGACCAGAGTGTCACCATCCTGCACGCCAAGGTCGCTCAGAAGTCCTACGGCACCGAGAAAAGGTTCTTCTGCCCACCTCCTTGTGTTTACATCAGCGGCCATGGATGGAAAGTCATGCAGGACCATCTGAAAGCGGCTGGCTGCGGAGACTCTGTGTATCGAGTGTGTGGTTACATGTGTCTGGACAGCTCCAGTCAGTCTCAGGCCGACACATTCAAACTGGTCTTCGATGAGCAGCCAAACTCCAGGATGTTTGCCTGTGCCAAGTCCCTGTTCATCTCTGACCAGGACAAGAGGAAACACTTCTGCCTGTTGCTGCGACTCTTCTTGGGCAACAGACAGGAAGTGGGTTCGTTCCAGAGCCGGATGATCAAAGTCATCTCCAAACCCTCCCAGAAGAGACAGTCCATGAAGAACGCCGACCTGTGTATCTCATCGTGCTCCAGAGTAGCTTTGTTCAACCGTTTACGCTCGCAGACGGTCAGCACTCGTTACCTCTCAGTGGACAGAGGAGCTTTTATAGCCAGCGCCAGACAGTGGACCGCCTTCACCATCAccctggtgcaGGAGCAGCATGCTGACCGAAGGGACTTTGTGCCGAGCGAGGGCTTCATCTGTTACGGCCGTGTGGTCCAGTTAGTGTGCACTGAGTCTGGAGTCGCTCTGCCACTCATGGTGATCCGTAAGGTCAACAAGCAGCACGCCATCTTGGATGTGGACGAGCCGGTCTCTCAGCTCCACAAGTGCGCCTTCCAGTTCCGAGACGACCCACACTCCTACCTGTGTTTATCCAACGACACCATCATACAGCACCAGgcCCCGTCCAGCGGCAGAGACTCGGGCAGAGTGGTGCTGAACGACGGGTCCTGCTGGACCATCATCGGAGTGGAAGCGGTGGAATTCACCTTTAATCAGGGTCCCGCCTGCATCCAGACCCCAGTTACTCCTTTTCCTGTTCTGACCGGGTTAGAGgtgaatggtggAGGGCACGTTGCCATGTTGGAGATCCAGGGAGACAACCTCAGCCCTCATCTCAAAGTGTGGTTCGGAAACAGCGAGGCGGAGACAATGTTCAAGTCTCCCAAATCTCTGCTCTGCGTCGTCCCCGACGTCTCCGCGTTCAGCGACGGCTGGCGCTGTCTGCGGCGCGTCATCACCGTCCCTCTGTGTCTCATCCGATCGGACGGCCTGATCTATCGCACGGCCTTCAGTTTCACCTACACCCCCGAGCTCCAGCCGCCGCCGGCATCCATCCGGGGGGCGTCAGgaggagggaaaagagagggagggatggagggggaCGAGCACGACGACAGCCTGTTAGAGACCATCCACCAGGAGTTCACCAGAGCCAACTTCCACCTCTTCATGCAGAGTTAGCTCATTGAGTCCTCAGGTGAATGTTGGGAGCAAAAGTCTGATTATAAGCAAGAAACGGTTTTGGATGAACGCTGGTCTCGTGTCAATGAACTGTGTGCAACTTTTGCCCCATTCTGAACTACCGGAATATCAAGGTTTATTTATTGTCACGGATAGGGTTGCACAATGAAATTCAGTTGTAGTCCCTTTATGttacacaattaaaataaaaacaaacagaactgTG
>XM_039798641.1
TTTATTGgcagtgtgtatttgtattcaataatacaaatgtaactgcATGCTAAGTTGTTGGCTATGTTGGGTTTAAATTATAAATAGAAAAGAGCAGCAGTCAACCGAAGAGAAaaggtgtgtgtgagaaagctGCCGTCCAGCAACAGGTGATTATCTCCTTATCCACACAAACGGAGAGATAGAgtaatgtgcacacacacacacaaacacacacacacacacacagagcagtggTCAGATAACAGATCCGGGGTGGAGGgcaaacatgaacacacacacacacacacacacacacacagagtgacacACATCTTTTCCATTGAAGTCGCTGTTACTGTAGATTGACTGTACGTTGAGGTGGAAACATGTAACTGGTTAAAGTGACTGATGGCCATTGACATCCTTTAAATAAACTAACGTCTGCTGCTGTGAGGACTGTGGAACTGAGAAGATAACTGTTACAGCATGTGGAACATCTGGATGGATAGAAACTGAACCTGCAGCGCAGAATGAGAACAACAACAAGAGGATCTTAACCGACTTGATTTCAGCAGAGTGACGATGGACCGGAGCAACACCCCCTCTTAATGTCAGCAGAGCCGATCATGGACGAGTTGGGCATCGCAGATCAAGGCAGGAGAGAAACCTCGAACACCCAGCCAGGATTCTCCCAGGCGGACCTCGCTCTCTTTtacccccctcctctctccccagacccgggcagcacgCTGACTCACCTGGGGACGCTGCTGGCCGGACACGACGCGCCGAGGACCGGCGGATGGGACAGGAGCCTGGACCTGGGGTTTCAAGGCTCCCAGTTACTGGGACCAACAAGGGAACCAGTAAGAGAAGCTCACGCAGACCAGAGTGTCACCATCCTGCACGCCAAGGTCGCTCAGAAGTCCTACGGCACCGAGAAAAGGTTCTTCTGCCCACCTCCTTGTGTTTACATCAGCGGCCATGGATGGAAAGTCATGCAGGACCATCTGAAAGCGGCTGGCTGCGGAGACTCTGTGTATCGAGTGTGTGGTTACATGTGTCTGGACAGCTCCAGTCAGTCTCAGGCCGACACATTCAAACTGGTCTTCGATGAGCAGCCAAACTCCAGGATGTTTGCCTGTGCCAAGTCCCTGTTCATCTCTGACCAGGACAAGAGGAAACACTTCTGCCTGTTGCTGCGACTCTTCTTGGGCAACAGACAGGAAGTGGGTTCGTTCCAGAGCCGGATGATCAAAGTCATCTCCAAACCCTCCCAGAAGAGACAGTCCATGAAGAACGCCGACCTGTGTATCTCATCGTGCTCCAGAGTAGCTTTGTTCAACCGTTTACGCTCGCAGACGGTCAGCACTCGTTACCTCTCAGTGGACAGAGGAGCTTTTATAGCCAGCGCCAGACAGTGGACCGCCTTCACCATCAccctggtgcaGGAGCAGCATGCTGACCGAAGGGACTTTGTGCCGAGCGAGGGCTTCATCTGTTACGGCCGTGTGGTCCAGTTAGTGTGCACTGAGTCTGGAGTCGCTCTGCCACTCATGGTGATCCGTAAGGTCAACAAGCAGCACGCCATCTTGGATGTGGACGAGCCGGTCTCTCAGCTCCACAAGTGCGCCTTCCAGTTCCGAGACGACCCACACTCCTACCTGTGTTTATCCAACGACACCATCATACAGCACCAGgcCCCGTCCAGCGGCAGAGACTCGGGCAGAGTGGTGCTGAACGACGGGTCCTGCTGGACCATCATCGGAGTGGAAGCGGTGGAATTCACCTTTAATCAGGGTCCCGCCTGCATCCAGACCCCAGTTACTCCTTTTCCTGTTCTGACCGGGTTAGAGgtgaatggtggAGGGCACGTTGCCATGTTGGAGATCCAGGGAGACAACCTCAGCCCTCATCTCAAAGTGTGGTTCGGAAACAGCGAGGCGGAGACAATGTTCAAGTCTCCCAAATCTCTGCTCTGCGTCGTCCCCGACGTCTCCGCGTTCAGCGACGGCTGGCGCTGTCTGCGGCGCGTCATCACCGTCCCTCTGTGTCTCATCCGATCGGACGGCCTGATCTATCGCACGGCCTTCAGTTTCACCTACACCCCCGAGCTCCAGCCGCCGCCGGCATCCATCCGGGGGGCGTCAGgaggagggaaaagagagggagggatggagggggaCGAGCACGACGACAGCCTGTTAGAGACCATCCACCAGGAGTTCACCAGAGCCAACTTCCACCTCTTCATGCAGAGTTAGCTCATTGAGTCCTCAGGTGAATGTTGGGAGCAAAAGTCTGATTATAAGCAAGAAACGGTTTTGGATGAACGCTGGTCTCGTGTCAATGAACTGTGTGCAACTTTTGCCCCATTCTGAACTACCGGAATATCAAGGTTTATTTATTGTCACGGATAGGGTTGCACAATGAAATTCAGTTGTAGTCCCTTTATGttacacaattaaaataaaaacaaacagaactgTG
>XM_039798642.1
GCCAGTTCTTCCCGTATGCATGAGCGGGGAAGAATGGAAAGAATGACAGGAGTCATTCACCTCCACCtccgGAGCCTGGACCTGGGGTTTCAAGGCTCCCAGTTACTGGGACCAACAAGGGAACCAGTAAGAGAAGCTCACGCAGACCAGAGTGTCACCATCCTGCACGCCAAGGTCGCTCAGAAGTCCTACGGCACCGAGAAAAGGTTCTTCTGCCCACCTCCTTGTGTTTACATCAGCGGCCATGGATGGAAAGTCATGCAGGACCATCTGAAAGCGGCTGGCTGCGGAGACTCTGTGTATCGAGTGTGTGGTTACATGTGTCTGGACAGCTCCAGTCAGTCTCAGGCCGACACATTCAAACTGGTCTTCGATGAGCAGCCAAACTCCAGGATGTTTGCCTGTGCCAAGTCCCTGTTCATCTCTGACCAGGACAAGAGGAAACACTTCTGCCTGTTGCTGCGACTCTTCTTGGGCAACAGACAGGAAGTGGGTTCGTTCCAGAGCCGGATGATCAAAGTCATCTCCAAACCCTCCCAGAAGAGACAGTCCATGAAGAACGCCGACCTGTGTATCTCATCGTGCTCCAGAGTAGCTTTGTTCAACCGTTTACGCTCGCAGACGGTCAGCACTCGTTACCTCTCAGTGGACAGAGGAGCTTTTATAGCCAGCGCCAGACAGTGGACCGCCTTCACCATCAccctggtgcaGGAGCAGCATGCTGACCGAAGGGACTTTGTGCCGAGCGAGGGCTTCATCTGTTACGGCCGTGTGGTCCAGTTAGTGTGCACTGAGTCTGGAGTCGCTCTGCCACTCATGGTGATCCGTAAGGTCAACAAGCAGCACGCCATCTTGGATGTGGACGAGCCGGTCTCTCAGCTCCACAAGTGCGCCTTCCAGTTCCGAGACGACCCACACTCCTACCTGTGTTTATCCAACGACACCATCATACAGCACCAGgcCCCGTCCAGCGGCAGAGACTCGGGCAGAGTGGTGCTGAACGACGGGTCCTGCTGGACCATCATCGGAGTGGAAGCGGTGGAATTCACCTTTAATCAGGGTCCCGCCTGCATCCAGACCCCAGTTACTCCTTTTCCTGTTCTGACCGGGTTAGAGgtgaatggtggAGGGCACGTTGCCATGTTGGAGATCCAGGGAGACAACCTCAGCCCTCATCTCAAAGTGTGGTTCGGAAACAGCGAGGCGGAGACAATGTTCAAGTCTCCCAAATCTCTGCTCTGCGTCGTCCCCGACGTCTCCGCGTTCAGCGACGGCTGGCGCTGTCTGCGGCGCGTCATCACCGTCCCTCTGTGTCTCATCCGATCGGACGGCCTGATCTATCGCACGGCCTTCAGTTTCACCTACACCCCCGAGCTCCAGCCGCCGCCGGCATCCATCCGGGGGGCGTCAGgaggagggaaaagagagggagggatggagggggaCGAGCACGACGACAGCCTGTTAGAGACCATCCACCAGGAGTTCACCAGAGCCAACTTCCACCTCTTCATGCAGAGTTAGCTCATTGAGTCCTCAGGTGAATGTTGGGAGCAAAAGTCTGATTATAAGCAAGAAACGGTTTTGGATGAACGCTGGTCTCGTGTCAATGAACTGTGTGCAACTTTTGCCCCATTCTGAACTACCGGAATATCAAGGTTTATTTATTGTCACGGATAGGGTTGCACAATGAAATTCAGTTGTAGTCCCTTTATGttacacaattaaaataaaaacaaacagaactgTG

Function

symbol description
rbpjl Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human RBPJL (recombination signal binding protein for immunoglobulin kappa J region like).

NR:

description
recombining binding protein suppressor of hairless-like protein isoform X2

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K06053 RBPSUH, RBPJK; recombining binding protein suppressor of hairless

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798639.1 False 2022 mRNA 0.56 13 38734167 38784058
XM_039798640.1 False 1995 mRNA 0.56 13 38734191 38784058
XM_039798641.1 True 2472 mRNA 0.53 13 38746631 38784058
XM_039798642.1 False 1750 mRNA 0.55 11 38756133 38784058

Neighbor

gene id symbol gene type direction distance location
LOC120557646 LOC103371188,LOC100695319,LOC106525027,LOC101482544 coding upstream 324893 38366059 ~ 38409274 (+)
LOC120557037 LOC105888650,LOC105896821,LOC103395674,LOC101068541,LOC105891059 coding upstream 386924 38346807 ~ 38347243 (+)
LOC120557028 NA coding upstream 389916 38342443 ~ 38344251 (+)
LOC120557038 si:ch1073-153i20.5,LOC103462478,LOC107386469,LOC103381127,LOC103395676,LOC102204254,LOC101485372 coding upstream 408177 38325543 ~ 38325990 (+)
LOC120557035 LOC103395674,LOC101167724,LOC101068541,LOC105888650,LOC101170117 coding upstream 421680 38311854 ~ 38312487 (+)
LOC120557663 NA coding downstream 73109 38857167 ~ 38886428 (+)
LOC120557676 NA coding downstream 113302 38897360 ~ 38913530 (+)
LOC120557116 NA coding downstream 157514 38941572 ~ 38942817 (+)
LOC120557678 NA coding downstream 161349 38945407 ~ 38947850 (+)
LOC120557683 NA coding downstream 338730 39122788 ~ 39142350 (+)
G44454 NA non-coding upstream 20344 38709982 ~ 38713823 (+)
G44451 NA non-coding upstream 50706 38683161 ~ 38683461 (+)
G44449 NA non-coding upstream 51076 38682795 ~ 38683091 (+)
G44438 NA non-coding upstream 113140 38620555 ~ 38621027 (+)
G44434 NA non-coding upstream 162026 38571897 ~ 38572141 (+)
LOC120557691 NA non-coding downstream 22388 38806446 ~ 38813444 (+)
G44488 NA non-coding downstream 40617 38824675 ~ 38825019 (+)
G44489 NA non-coding downstream 56976 38841034 ~ 38841233 (+)
G44499 NA non-coding downstream 204010 38988068 ~ 38988533 (+)
LOC120557696 NA non-coding downstream 315927 39099985 ~ 39100496 (+)
G44436 NA other upstream 121196 38612637 ~ 38612971 (+)
LOC120557027 NA other upstream 559673 38166182 ~ 38174494 (+)
plekha6 plekha6 other upstream 638095 37960706 ~ 38096072 (+)
fezf2 fezf2 other upstream 2022872 36703255 ~ 36711295 (+)
trnac-gca_18 NA other upstream 2771557 35962539 ~ 35962610 (+)
LOC120557667 LOC102775714,LOC103375741 other downstream 116514 38900572 ~ 38903056 (+)
LOC120557670 NA other downstream 169060 38953118 ~ 38981733 (+)
LOC120557680 NA other downstream 963115 39747173 ~ 39774250 (+)
G44581 NA other downstream 1029902 39813960 ~ 39821908 (+)
LOC120557666 NA other downstream 1372150 40156208 ~ 40431341 (+)

Expression


Co-expression Network