prkcda (prkcd,LOC104933455)


Basic Information

Item Value
gene id prkcda
gene name prkcd,LOC104933455
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16016979 ~ 16034962 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798644.1
TTGCCGAAAAGCCTCTGCGAACGCGCGCTAACATACACTTCCTCAATCGACGGAATCCCAGAGCGAAAAacgagaggaagagaaagagcaaCTTTCGTCGTGCTGCGGTGATAAAGAAACAGCACAGAGTTTGCAGGACGAGGTGACGTTGGTACTTGTCACCATGGCTCCTTTCTTGAGGATCGCCTTTAACTCATACGACTTGGGCCTCCTGCTTCCTCTGGCCGACCCGCCTTTCTGTGCAATCAAGTTGAAGGAGGCCTTGACAACTGATAGAGGTAAGACCCTGGTTCAGCGGAAACCCACCATGTACCCGGCTTGGAAGGCCACTTTTGATGCTCACATCTATGAGGGTCGTGTGTTGGAGGTACTGCTGATGAAGACAGCAGAGGAGCCGCTGGCTGAGGTCACCGTTGGAGTGTCTGTCCTTGCTGAGCGCTGCAAGAAAGCCAACGGGCGCGCTGAGTTCTGGgtgGATCTTCATCCTTCTGGGAAAGTGATGATGGCAGTGCAGTATTTTCTAGAGGAAGTGGATACagAGAGTAAGCAGGCTGGCAAGGAGGAGGAGGCTCCTACCCTGAACCGTAGACGAGGGGCCATCAAGCAGGCCAAGATCCACTTCATAAAGAACCATGAGTTCATTGCCACGTTCTTCAGACAGCCCACTTTTTGCTCCGTGTGCAGAGAATTTGTCTGGGGACTCAACAAGCAAGGCTATAAATGCAGACAATGCAATGCAGCCATCCACAAGAAATGCATAGACAAAATCATCGGCAGATGTACCGGTACTGCTGCCAACAGTCGGGATACTGTGTTCCAGAAGGAGCGCTTTAAAATTGACATGCCGCACCGTTTTAAGACCAACAACTATATGAGTCCCACCTTCTGCGACCACTGTGGAAGTCTCCTGTGGGGTCTTGTCAAACAAGGCCTCAAGTGTGAAGATTGTGCCATGAATGTCCATCACAAGTGTCAGGATAAAGTAGCCAACCTTTGTGGTATCAACCAGAAACTACTAGCTGAAGCACTCACACAAGTCAGCCAGAAATCGTCCACCCGCCGTTCAGATCCAAACATGCCTGATCTGCCTGATATTGGAATCTACGATGAAGTTAGCAAGCTTGCTGGACTGAATATCAATGATGGATCTCCCTATGGCAGACTGTGGGAGGGGTCCAACCCACGGCCTCAGTCTCGTATAACTCATTTGACCCGCATCAACGTGGACAACTTTGTCTTCCACAAGGTCTTGGGAAAAGGCAGCTTTGGCAAGGTTCTCCTGGCAGAGCTGAAGGGTAGTGGAGAGTACTTTGCAGTAAAGGCTCTAAAGAAAGATGTAGTGCTGATGGATGACGATGTGGAGTGCACTATGGTAGAGAAGAGGGTCTTGGCTTTAGCCTGGGATAACCCCTTCCTCACACATCTTTACTCCACCTTCCATACCAAGGAGCATCTGTTCTTTGTGATGGAGTATCTGAACGGAGGAGACTTGATGTTTCATATTCAGGAGAAAGGGCGCTTTGAACTCTACAGAGCCACGTTCTACTCTGCTGAGATCATTTGTGGTCTTCAGTTCTTACATACCAAAGGGATCATCTACAGAGATCTTAAGTTAGACAATGTGATGCTGGACCATGAGGGACACATAAAGATCGCTGACTTCGGCATGTGCAAGGAGAACGTGTTTGGAGAGAATCGTGCTACAACTTTCTGCGGTACTCCTGACTATATCGCCCCAGAGATCCTGCTGGGACAGAAATACTCATTCTCTGTTGACTGGTGGTCATTTGGGGTGTTGCTTTACGAAATGCTGGTTGGTCAGTCGCCTTTCCATGGAGATGATGAGGATGAGCTGTTTGAGTCCATCCGCATGGATACTCCCCACTATCCTCGTTGGATCAACAAGGAGGCCAAGGACCTGCTTGAGCAGTTGTTCGAAAGAGACCCCACTCGCAGGCTTGGGATCGTGGGTAATGTCCGTTTACAGACGTTCTTCAAGAACATCAACTGGCAGGCCTTGGAGAATAGAGAGATTGAACCCCCCTTCAAACCCAAAGTGAAAGCACCAAATGATTGCAGCAACTTTGATCGGGAGTTCCTCAGTGAGAAGCCTCGTCTCTCCTACAGCGATAAGAACTTCATAGACTCCATGGATCAGGCGGCATTCGCTGGCTTTTCATTCATCAACCCTAAGATGGAGCAGCTTTTAGAAAAGAGAGTGTTGTGA
>XM_039798645.1
TGCCGAAAAGCCTCTGCGAACGCGCGCTAACATACACTTCCTCAATCGACGGAATCCCAGAGCGAAAAacgagaggaagagaaagagcaaCTTTCGTCGTGCTGCGGTGATAAAGAAACAGCACAGAGTTTGCAGGACGAGCAGGTGACGTTGGTACTTGTCACCATGGCTCCTTTCTTGAGGATCGCCTTTAACTCATACGACTTGGGCCTCCTGCTTCCTCTGGCCGACCCGCCTTTCTGTGCAATCAAGTTGAAGGAGGCCTTGACAACTGATAGAGGTAAGACCCTGGTTCAGCGGAAACCCACCATGTACCCGGCTTGGAAGGCCACTTTTGATGCTCACATCTATGAGGGTCGTGTGTTGGAGGTACTGCTGATGAAGACAGCAGAGGAGCCGCTGGCTGAGGTCACCGTTGGAGTGTCTGTCCTTGCTGAGCGCTGCAAGAAAGCCAACGGGCGCGCTGAGTTCTGGgtgGATCTTCATCCTTCTGGGAAAGTGATGATGGCAGTGCAGTATTTTCTAGAGGAAGTGGATACagAGAGTAAGCAGGCTGGCAAGGAGGAGGAGGCTCCTACCCTGAACCGTAGACGAGGGGCCATCAAGCAGGCCAAGATCCACTTCATAAAGAACCATGAGTTCATTGCCACGTTCTTCAGACAGCCCACTTTTTGCTCCGTGTGCAGAGAATTTGTCTGGGGACTCAACAAGCAAGGCTATAAATGCAGACAATGCAATGCAGCCATCCACAAGAAATGCATAGACAAAATCATCGGCAGATGTACCGGTACTGCTGCCAACAGTCGGGATACTGTGTTCCAGAAGGAGCGCTTTAAAATTGACATGCCGCACCGTTTTAAGACCAACAACTATATGAGTCCCACCTTCTGCGACCACTGTGGAAGTCTCCTGTGGGGTCTTGTCAAACAAGGCCTCAAGTGTGAAGATTGTGCCATGAATGTCCATCACAAGTGTCAGGATAAAGTAGCCAACCTTTGTGGTATCAACCAGAAACTACTAGCTGAAGCACTCACACAAGTCAGCCAGAAATCGTCCACCCGCCGTTCAGATCCAAACATGCCTGATCTGCCTGATATTGGAATCTACGATGAAGTTAGCAAGCTTGCTGGACTGAATATCAATGATGGATCTCCCTATGGCAGACTGTGGGAGGGGTCCAACCCACGGCCTCAGTCTCGTATAACTCATTTGACCCGCATCAACGTGGACAACTTTGTCTTCCACAAGGTCTTGGGAAAAGGCAGCTTTGGCAAGGTTCTCCTGGCAGAGCTGAAGGGTAGTGGAGAGTACTTTGCAGTAAAGGCTCTAAAGAAAGATGTAGTGCTGATGGATGACGATGTGGAGTGCACTATGGTAGAGAAGAGGGTCTTGGCTTTAGCCTGGGATAACCCCTTCCTCACACATCTTTACTCCACCTTCCATACCAAGGAGCATCTGTTCTTTGTGATGGAGTATCTGAACGGAGGAGACTTGATGTTTCATATTCAGGAGAAAGGGCGCTTTGAACTCTACAGAGCCACGTTCTACTCTGCTGAGATCATTTGTGGTCTTCAGTTCTTACATACCAAAGGGATCATCTACAGAGATCTTAAGTTAGACAATGTGATGCTGGACCATGAGGGACACATAAAGATCGCTGACTTCGGCATGTGCAAGGAGAACGTGTTTGGAGAGAATCGTGCTACAACTTTCTGCGGTACTCCTGACTATATCGCCCCAGAGATCCTGCTGGGACAGAAATACTCATTCTCTGTTGACTGGTGGTCATTTGGGGTGTTGCTTTACGAAATGCTGGTTGGTCAGTCGCCTTTCCATGGAGATGATGAGGATGAGCTGTTTGAGTCCATCCGCATGGATACTCCCCACTATCCTCGTTGGATCAACAAGGAGGCCAAGGACCTGCTTGAGCAGTTGTTCGAAAGAGACCCCACTCGCAGGCTTGGGATCGTGGGTAATGTCCGTTTACAGACGTTCTTCAAGAACATCAACTGGCAGGCCTTGGAGAATAGAGAGATTGAACCCCCCTTCAAACCCAAAGTGAAAGCACCAAATGATTGCAGCAACTTTGATCGGGAGTTCCTCAGTGAGAAGCCTCGTCTCTCCTACAGCGATAAGAACTTCATAGACTCCATGGATCAGGCGGCATTCGCTGGCTTTTCATTCATCAACCCTAAGATGGAGCAGCTTTTAGAAAAGAGAGTGTTGTGATGACAGTCAGACCTGGGTTACATCTCTACCGCTTAAGGACAGTTCCCTTATTCTGTCACCTTGTTAAACTTACAAATGAATGAGCTGTTCCACAATCAGTATTCGTGTGACCTTATTTTAAGCACAAACCATTCTCCTTGGGTACGTGTAGAAATGATAAGCGTAGAAACGGGCTCTTGTACTGTACATATTGAcagtattgtgtttgtgtgcatgcttATTATTTGTCTAGGTTGTGAAAGCCTGTATGAGTAATAATATAGGGGCGGGAGGTTGAAAATCCTTACATTTCACTTGACGTCACCGCTACCATCTGCAGCTATTTTGTGTCCCTTTTTGTAACATTTAATTCAACCCAACTGGGAATGAAATAGTATGAAGAGGGAAAGAAACCTATAGGAATAAATTATGCTGTATACTTCAAATGtagattttttgtgtgtgaatgagttGACTGCATGTATAGAAATCTCAGACCAACAAAAACTTATTTGTCTTTAAATATAGATTAATAATGAACGTTATCTGTCTTTGGAACATCTGAATTCTTGCCTTTGACTGAATGAATCATGTCTGGCTGATAAAGAAGAACTTGTGGTGATTGGCTTTCCGATCCCATATAAAGAACTAATTTGAACAGATTAACAGCTGTTCTCAGCTGAATTGAAAGGTCCTATCTGTGTACAGAGGAGGCAGTCGGTGCAAAAGGTCAAGTAAAGGTACGTGACTTCAAACAGTAAGTTCGGAGTCACTGAAACGCTGTATATAGacaatgtatatgtatattgctGTAACATGTATATTTGTTCGCTAAggatgtactttttttttttatgtctccaTCTTTTAcatctgattaaaaaaacatcaac

Function

symbol description
prkcd Enables enzyme activator activity; protein kinase binding activity; and protein serine/threonine kinase activity. Involved in several processes, including cellular response to oxidative stress; positive regulation of cellular metabolic process; and protein phosphorylation. Located in several cellular components, including cytosol; endolysosome; and endoplasmic reticulum. Implicated in autoimmune lymphoproliferative syndrome type 3 and fatty liver disease. Biomarker of hypertension and portal hypertension.

NR:

description
protein kinase C delta type-like

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K06068 PRKCD; novel protein kinase C delta type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798644.1 False 2227 mRNA 0.49 18 16016979 16034090
XM_039798645.1 True 3101 mRNA 0.46 18 16016980 16034962

Neighbor

gene id symbol gene type direction distance location
LOC120558102 LOC104943766 coding upstream 5473 15991734 ~ 16011506 (+)
tatdn2 NA coding upstream 56699 15948449 ~ 15960280 (+)
vhl vhl,LOC104941408 coding upstream 71427 15942764 ~ 15945552 (+)
pa2g4a pa2g4,LOC104933448,LOC102793326 coding upstream 103360 15903500 ~ 15913619 (+)
erbb3a erbb3 coding upstream 117078 15879790 ~ 15899901 (+)
rft1 rft1 coding downstream 1012 16035974 ~ 16039274 (+)
mustn1a mustn1 coding downstream 4851 16039813 ~ 16041213 (+)
arpc4 arpc4,LOC103358720,LOC100696600,LOC103385929,LOC107721188 coding downstream 126998 16161960 ~ 16167138 (+)
emc3 emc3,LOC101173295,LOC101079695 coding downstream 527903 16562865 ~ 16566395 (+)
usp4 usp4,LOC102796025 coding downstream 531739 16566701 ~ 16578215 (+)
G38966 NA non-coding upstream 31883 15984624 ~ 15985096 (+)
LOC120557201 NA non-coding upstream 95357 15919385 ~ 15921622 (+)
G38948 NA non-coding upstream 102078 15914539 ~ 15914901 (+)
G38885 LOC104942130 non-coding upstream 254664 15760792 ~ 15762315 (+)
G38860 NA non-coding upstream 287579 15727979 ~ 15729400 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding downstream 160417 16195379 ~ 16195784 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding downstream 200052 16235014 ~ 16251725 (+)
G39113 NA non-coding downstream 468476 16503438 ~ 16510185 (+)
G39134 NA non-coding downstream 517722 16552684 ~ 16556205 (+)
G39143 NA non-coding downstream 544123 16579085 ~ 16579722 (+)
ccdc174 ccdc174 other upstream 42742 15965402 ~ 15974237 (+)
crbn crbn,LOC102793823 other upstream 79882 15923321 ~ 15937097 (+)
G38834 NA other upstream 369128 15645511 ~ 15647851 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 1142520 14865059 ~ 14874459 (+)
G38517 NA other upstream 1200543 14808352 ~ 14816436 (+)
eefsec eefsec,LOC102787825 other downstream 14716 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 114163 16149125 ~ 16158362 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 398276 16433238 ~ 16435229 (+)
G39116 NA other downstream 482574 16517536 ~ 16543580 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 929655 16964617 ~ 17046696 (+)

Expression


Co-expression Network