lrrn2 (LOC104948560,LOC103359348)


Basic Information

Item Value
gene id lrrn2
gene name LOC104948560,LOC103359348
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14154131 ~ 14164411 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798652.1
agagagagagggggggagattCATTCTGTTCCAATTTATTCTTAAGCTCCAGTGACAGAAAGAGGAGAGCTAGGGAAGTGATATTTCAGGAATCTTAAGAGATCCATAAACGTGTGactcagagggagaagaagaagaagaaaaaaacattcggGCACTTGAAGCATTTGCAAAGAAAGACTGAGCAAatgaagaaaggaagaaatgaTGAGATGTGGTCGGTGCTTCAGTTGTGtgagCTGCCGCACTGGGAGCCATGAGACCTCCACCTGTGGCCAGGATGTGAGATCGAGGGTGTGACAATAAAGGCCATCACCGAGCCACTGTGCAGTCCCTGTTCTACCACTGAATCAcagttaaacataaaaaactcTCTTGGTATAACAGAGTCCTTGACTATAAAGGGACAAACAcatttaatgttttcagttGTGTCTGAATCTGCTGTAGAATGTTATTAACAACATAGTCACTGTTTAATCAGTTTAGATTTTAATGAACGATGACAGTGAATCATCTGGCCTACCTTTTACAGTTTGCACACACACCTTGAAACTGTTAATGTCCCAACTTCCCACACATTACTGGTCCAAATGATTCATCTAACATCCTCATAACAAACTCTTTGCCACCTTGTCTGAATCGGCTCCTGTGACCTGCAAGGATTATGAGGCCGACTTTAGTGTTTCTACAGTCGcagtgtctcctgtgtgtgttggttggtgTATGTGTGCCCGGCGTTGTCGGCTCGCTACCTCATGCACTACCATGGCACGTCTCCTGCCCGgtgcggtgtgtgtgtcagatcaAGCCGTGGTTCTCCCCTGACTCTGTCTACCATGAAGCTCCCACTGTGGACTGCAACGACCTGCTCTTGACCAAGCTCCCCTCACCCATACCCccgaacacacacaccctgcgcCTGCAGAGTAACCATCTGTCTGAGCTCAACACTGCGGTGCTGCACGGACTCGCCACCCTCACCGACCTTGACCTTTCCCAGAATCGCTTCAGCAGTGTCAGGACAATAACTCAGAGCGCCTCCCTGCCCTCTCTACTGTCTCTACATCTAGAGGAAAACCATCTCAGTCACCTCCCTGAGGCCTCCTTCTGCTCACTGCCAGCTTTGCAGGAACTCTTCCTCAGCCACAACAACTTACACTCGATAGCACCTGGAGCCTTCACCGGTCTGGACTCACTACTGCGTCTGCATATCAACAACAACAGACTCACCACTGTTGACCCTCGGTGGTTCAGGGCTTTGCCCAGCTTGGAAATTCTCATGCTTGGTGGAAACCCTGTGGAGGCCCTGCCTGAGGGGGGCTTCCTGGCCCTGAAATCCCTCCGGAGTCTTGTCCTTGGTGGTATGGGTCTGAGAGGCTTAGCTGAAAAAGCACTGGAAGGGTTGGAGGGCTTAGAGAGCCTCTCCTTCTACGATAACCGGCTGACAATGGTCCCCACTCAGGCCCTGATAAGAGTGCCACGACTGAAGTTCCTCGACCTCAACAAGAACCGCATCAAACTCATTGAGACAGGAGACTTCCGAGACATGGTCCACCTGAAGGAGCTCGGCCTGAACAACATGGAGGAGCTGGTGTCCATTGAGAGAGCCGCCCTGGAGAACCTTCCAGAGCTCACAAAACTTGAGATCACAAACAACCGGAAACTGTCCTACATTCATCCACAGGCTTTCCTCCAGCTGAGCAGGCTGGAGAGTCTAATGCTCAACTCCAACTCTCTGAGTGCACTGCACCAGCACATTGTGCTCAGCCTGCCGAGTCTCCAGGAGGTCAGCTTACACTCCAACCCACTGCGATGTGACTGCCTATTTCACTGGGCTGCTGAGGAGGCCTCTCACTCTCAcattgaaaacacacaaaaagaaaagcaaacaccTCGCATGGTGCGTTTCATCCAACCCCAGGCCACCCTGTGCTCTGAACCCCCAGAGCTGAGAGCTCGCAGGGTAAGAGAGGTATCCTCCAGGGAGATGTCGGCCTCATGCCTCCCCATGATCCCTACCAGCTCCCTGCCTTCCTACGTTGGGGTGAGAGAAGGAGGAAAACTGGTCTTGCACTGCCGAGCTCTTGGGGATCCACAGCCTGAACTGTACTGGGTGACTCCCTCTGGGAGGAGACTTGGTCCTGAATTGAGCCAAGTATCCAAAGGTTTACCAGCTCCTGCTCCCTGCCACAGCCTGACAGCCTCTGAGGGATTTAACCACACATCCGTCTCCATCATCTCTCCGAGCCAGCCTCAAGATGATACTCCCTGTAACCCCTCCAAACACTACCGGCTACTGCCTGAGGGAACTTTGGAAATAAACAAGGTCACCCTCAGCGAGGCAGGATTGTATACCTGTGTAGCTGAAAATGCACTGGGAGCAGATACACGCAGTGTTACTGTGGGTGTGCAtggcagagaaaagaaaagaaagtgggGGATGGCTGCTAATATGAAGGGATATCAGTTATTCAAAGCGGAAGCCAGGTTGGAGGTGAGAGAGGTCGGACAACACTATGCTATCCTGTCATGGCAGAGCGGGCGCAACCTCCATTCGACTCGTCTGTCATGGCAAGCCATATACTCAAACGCACACACGCCCACATACACCACACGCATCCTGGCTGGTACTCAGAGCTTCAACCTGACCCACCTGCAGGCAGAGACATTTTACCGAGTGTGTCTACATTTGGGGATCAGTGAGGGCGCCAAGCACGCCAGCAGGAGATCAAGAGAGAGCAGAAAGCCTCAGTGTGTGTCATTCAGCACAAAGGCTGTCCCAGAACCACAGCCTAGCCTGCAGCTAAGCCCAGAGCTGGCCTCCACAGCAGTCACACTACTGCTCCTCGCACTtattctgctgctgctggcaggCCAGGCCTGGGACAATGAGCCTGGCGAAGGGGACGGAAAGCACCACAGTACCATCCTCCAGGAAAGTCCTAAGGCTGTGATCATCAATCACACAGAAGGGAGCAACACACATTAGCCAAAGCAGAGTGCGGAACTGCTATTACACAATGACTGCTGAGATAATTatgtttgtgcacattcaaatcaggacaaaaaaaaacacacgcacacacgcacacgcacacacacacacacacacacacacacacacacacacacacacacacacataaaatgtcaaatatacACTTGTACACATGTGAATTACAGCTAGAAGAGAGGAGGCATAGATCACAGCATTGGTGTAGAAAGATATTTGTACTTATTTTATATACCGTATAAAGTATATATTGACATTGTTTCTGTGTTAAGGTGTATTGAAAAGAATGCCTAAACCCTAACCAGGGAAACAAAAGTGGACAATCATACTCCTGCAGCACAGTGAATGAACACAGGAGAAACTAAATAAGTCTGAGCTGCCGATGACCACCAGACTGAAACTAAAGACAACCTGATTTAATCCAGGGACATATATCTGCTGAGGAGAGCGGCTCAGACCTCCAGGGTATTTGTTATGTTTTCTATCTACATGTTTCACAGACCGAACCATTATTTATCCAAGCAGATAAAACTCTGTCTTGAGACTGATACTTAATGAAATTCCTGCATTGCTGTAAACAACCCTTTTGCTTAGCTTTTAGTACCTTGGACTGGGTTGTCCATCTTGCAGTACATATACTCATGCCAATTCCCACTCCTCTTTTAGCATACATGTGATCTGAAAAGCAATTGTGTTAAATTCTATTTTGAGCTAATACACAATAAAATCTTTTCAATTTA

Function

NR:

description
PREDICTED: leucine-rich repeat neuronal protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798652.1 True 3756 mRNA 0.49 2 14154131 14164411

Neighbor

gene id symbol gene type direction distance location
slc6a14 slc6a14,LOC103367878 coding upstream 21359 14121615 ~ 14132772 (+)
fmoda LOC104959962,LOC103367868 coding upstream 34684 14112976 ~ 14119447 (+)
mapkapk2a mapkapk2,LOC104959968 coding upstream 108909 14006356 ~ 14045222 (+)
dyrk3 dyrk3 coding upstream 165619 13978736 ~ 13988512 (+)
LOC120557195 rassf5,LOC104925239 coding upstream 177765 13964299 ~ 13976366 (+)
rh50 LOC107395613,LOC108235666,LOC106513294,LOC100692870,LOC103359386,LOC101474088,LOC102304555 coding downstream 41758 14206169 ~ 14209691 (+)
LOC120557951 LOC103359350,LOC103386010,LOC102306603,LOC101466691 coding downstream 56611 14221022 ~ 14226084 (+)
LOC120557947 LOC104954762 coding downstream 78015 14242426 ~ 14248447 (+)
inpp1 inpp1 coding downstream 88596 14253007 ~ 14258285 (+)
nab2 nab2 coding downstream 102553 14266964 ~ 14277430 (+)
G38206 NA non-coding upstream 108572 14045357 ~ 14045559 (+)
G38164 NA non-coding upstream 150944 14002962 ~ 14003187 (+)
G38163 NA non-coding upstream 161952 13991909 ~ 13992179 (+)
G38156 NA non-coding upstream 164290 13911329 ~ 13989841 (+)
LOC120556887 NA non-coding upstream 376981 13775781 ~ 13777150 (+)
G38247 NA non-coding downstream 28692 14193103 ~ 14195417 (+)
G38274 NA non-coding downstream 129522 14293933 ~ 14294157 (+)
G38276 NA non-coding downstream 141349 14305760 ~ 14308441 (+)
G38317 kdm5b,LOC108235655 non-coding downstream 300563 14464974 ~ 14466684 (+)
G38331 NA non-coding downstream 328492 14492903 ~ 14494740 (+)
tfeb tfeb other upstream 625812 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 781759 13319684 ~ 13372372 (+)
per3 per3 other upstream 824799 13305415 ~ 13329332 (+)
vamp3 vamp3 other upstream 850516 13296376 ~ 13303615 (+)
spcs1 spcs1 other upstream 945873 13205469 ~ 13208258 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other downstream 62686 14227097 ~ 14233537 (+)
LOC120557952 mettl21b other downstream 170749 14335160 ~ 14337760 (+)
cdk4 LOC107684003,LOC107701179 other downstream 576198 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 600886 14765297 ~ 14857069 (+)
G38517 NA other downstream 643941 14808352 ~ 14816436 (+)

Expression


Co-expression Network