rh50 (LOC107395613,LOC108235666,LOC106513294,LOC100692870,LOC103359386,LOC101474088,LOC102304555)


Basic Information

Item Value
gene id rh50
gene name LOC107395613,LOC108235666,LOC106513294,LOC100692870,LOC103359386,LOC101474088,LOC102304555
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14206169 ~ 14209691 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798676.1
CAAAATGTTGTTTAGTTATCGACTGCCAGTGTCACGTCTGTCTTTCTCTATGCAGacatttgcttcttttttttaacagagatGTCTTTCTCCAACTAGGCTACTATACATGTTGTGCAcgcagcagacattttgataaTATAataagcacaggtgttactaatatgatggctctgttctattAATCTGTCTCAGTAAGCCATGCAAGTGtgacagtgagtcagcatggACAATACTGAAGCAGCTAAAGAGAGTTCAGCCATCATTAAGGCCAACTATCCCACACCAAAGCAACAGTaatgtagcctgacaagccagacccacatcaagatgttggctgaaaattacatttgctgccaatagggtgcgtctagatttctagatTACTAACCATAATGATGTTGATGGCACACTATCATGGTGTATTATTATCATTTGAGCAATGCAacacactgtaataataatgtagACATTGCAAATTAAATTAACATTAGACAACTCAaggtaattgtgaataaaactgAAATTCAACAACTCCTAGCCTAATTGGCACGGCGTTTACTGTCAGAATGCAGCCTCCATTTTGCTTTTGTCAGTGTGTCAAATTAACTCAAGCCTTTTTTAACTGCACCCTTATTAATCTTTTATTAGCACTAAATCATGCTCTTGAAATCTACCTTGAGAGAGGTAGAGGTTTTAACAGGACTGTGATGTGTGACAACATGAGGGGAAGAGAGAAGGTAATTTTAAGGAATCTGAAGGATTAAAGTACAGTCTGCACTCAAGGTGCTGCAGAGTTACCATGTGTTGAGTGGGGCTATGCTCCTTACCCTGCCATAAGCTGCTCTTATCTGATAAGATAGAAGTATAAAAGGAATGGTGCTGCAGCTGGGTGAGCAAATGTAAGCTGTGCATCATCATGAATGTGTCTACAAGTTTAAAGGTGCGCCTGCCGGCACTCGTGCTAGTGTCGGAGGTTGTCATGATAGTTCTTTatgctgtttttgtcacttatgaTGACAATGCCAATGCTAAGCTGCAAAACAATAAGACCAACCCGATGGAGAACTCCATGTATAGAGACTATCCCTTCTTTGCCGACGTGCAGGTGATGATCTTCATAGGCTTTGGCTGCCTGCTGGCCTTCTTCCGATTCTACGGTTTCAGTGGAATGGTCTTCAACTTTCTTACGGCTACGTTTGCGATCCAGTGGGCGATCCTGATGCAAGGTTTCTTCCAGTTTTACTACGATGGTAAAATTCACCTGGGAGTGATCAACCTTCTGAATGCAGAGTTTGCCTGTGCTGTGGTGCTAATCTCTTTCGGAGCTGTGCTTGGGAAGACCAGTCCTGTTCAGCTCCTGGTCATGGCACTGCTGGAgatctctttcttttctttgacaGAGTGGGCTGTTTTGAAATACATTAGAATCAATGATGCAGGTGGCACTATTCTTATTCACCTGTTTGCCTGCTATTTTGGTCTAGGGGTGACGTTTGTGCTGTATCGCCCGAGCCTAAATGAGGGACATTGTAAAGAAATAACTAGCTATCATTCTGACATCCTCTCTGTAATGGGAACCTTGTTCCTCTGGGTGTTCTGGCCTTCATTTAACTCTGCTCTGACCTTTAAGGGTGATGCTCAACACAGAGCAATACTCCACACTTTTATAGGTCTCAGCTCATCCACTATCACCACCTTCGCACTCTCTGCATTGTTCAATAAGAGAGGCAAGCTCACAATGGCTGATATTCAGAACGTGACTCTGGCAGGCGGCGTGACAGTTGGGGCTTCTGTGGACATGATGATTTCCCCTGTAGCTGCATACGCCCTGGGCATCATGGGCTGCACTGCCTGTTTCTTTGGATACAAGTACCTGACCCCCTTTTTGGCCCGACACATGAGGATCCAAGACCAATGTGGTATTCACAACCTCCACGGGCTTACTGGCCTCATATCGTCTGCAGCAGGGATCTGTGCCATCCTCCTAGCCACTGAAGAAACCTACGGGCCCAGCATGTACCAGATCTTTTCCCATCGTGCTCCACCTGAGGGAGATCCAAAGCTCCTGGAACTGCAGAGGCTGATTCCTGGGCTGAAGCCAGGCTTAGGTCGTACTGCGCAGGAACAAGCTCTCTTCCAGGTGGCAGCTGTCTTCTCCACCATCGCAGCGTCTGCAGTTGGTGGGCTGCTCACTGGTTTGGTCATGAAGCTGCCTTTCATGGCATCCCCATCTGACCAGGACTGCTTTGATGATGAGCTTTTCTTTGACATGCCCTCTGACTTTGACAGCGTAGAAGTGCTTAAGACCCCCATAAGCTATGATGAAAAGATACAAATGAGCTCTATGAACACCAAAGTCGACACACTGAGGCAGTCATTATGAGTCATTCCATGTTTAAATTGTCATTACAACTATCTCACCTGTTCGCAAGTGTTATGTGTGATTTGATTATTATTCCTGTTGGAGAGATGAACCATTGACCAAAAGCTAGTTTTGTATGCAAAATGGCAAAAGggaaagtaaaagtgtaaaatatgatattacatattatatttaCACGATAGATGTAATTACATATTAAATCTGTCAGAAAACTCAAATGTCCACGAAGGTTGTTTAAAAGGGGAAAGTTtcaaaaaaatgattttccttTGTTGAAATACATACATCAgtcattacttttatttttaatgattATATGCTAAAATCATATcaatatttcattcatttttacatttagatttaaaaaaatactctaataataaataattataaactttttattattaacaaACTCCACAATATTCTTGTACAGCAGGTCCCCGAGAACCTCTGTGAtgatttcaaagtttttttcaccaaacgtttttttaataattagttGCTAAAGTCATACCCCATACACATACATTGCCAATTaggtatattttaaaaaatattcatataAAATATAACCAAATTTCGCAGCTGCCACAACAGGTACAGTTTGATTCAAAAGCTATCACTACACAGCCCTAATCATAAAGTATGTCCTGCACATGCTAGCCGAAGAGTGTAAACATCAAGCATCTGAAATACCGTTATCTCACTAACCTATAAACAACTGCTTAATGCCAAATCTCTTTACTTTTCTGGAGGTAAAGGCAGAGCAAACCTTTCTGTATTTGATTCCCTAATTAGAAAGTTGATTGATTTACACTATAAGCGcttgtattttatttactaCTTTGTTTGTCCATAGATTATTGGGCAGCTTCATCTCTTTACTAAAATAAATGGTGTGTTTGAGTCAATAATGTTGTGTCCTTAAGAAAAAAGATAATGAATACCAAATAACAGGTAAAGTTTTGTCCAGCCAGGGTTGTCATTGCCTATAAGTGCATGCCAATAGTTACAAAGGTTGAAGAACATTTTCCATCACCACAGTATCTTAACTGATAGCGTCAACAAA
>XM_039798677.1
TGCTTCCGAGTGCGTGAACGTGCAAGTGAACCCGGACCGTGATTTCACATAAAGGTGATGATCTTCATAGGCTTTGGCTGCCTGCTGGCCTTCTTCCGATTCTACGGTTTCAGTGGAATGGTCTTCAACTTTCTTACGGCTACGTTTGCGATCCAGTGGGCGATCCTGATGCAAGGTTTCTTCCAGTTTTACTACGATGGTAAAATTCACCTGGGAGTGATCAACCTTCTGAATGCAGAGTTTGCCTGTGCTGTGGTGCTAATCTCTTTCGGAGCTGTGCTTGGGAAGACCAGTCCTGTTCAGCTCCTGGTCATGGCACTGCTGGAgatctctttcttttctttgacaGAGTGGGCTGTTTTGAAATACATTAGAATCAATGATGCAGGTGGCACTATTCTTATTCACCTGTTTGCCTGCTATTTTGGTCTAGGGGTGACGTTTGTGCTGTATCGCCCGAGCCTAAATGAGGGACATTGTAAAGAAATAACTAGCTATCATTCTGACATCCTCTCTGTAATGGGAACCTTGTTCCTCTGGGTGTTCTGGCCTTCATTTAACTCTGCTCTGACCTTTAAGGGTGATGCTCAACACAGAGCAATACTCCACACTTTTATAGGTCTCAGCTCATCCACTATCACCACCTTCGCACTCTCTGCATTGTTCAATAAGAGAGGCAAGCTCACAATGGCTGATATTCAGAACGTGACTCTGGCAGGCGGCGTGACAGTTGGGGCTTCTGTGGACATGATGATTTCCCCTGTAGCTGCATACGCCCTGGGCATCATGGGCTGCACTGCCTGTTTCTTTGGATACAAGTACCTGACCCCCTTTTTGGCCCGACACATGAGGATCCAAGACCAATGTGGTATTCACAACCTCCACGGGCTTACTGGCCTCATATCGTCTGCAGCAGGGATCTGTGCCATCCTCCTAGCCACTGAAGAAACCTACGGGCCCAGCATGTACCAGATCTTTTCCCATCGTGCTCCACCTGAGGGAGATCCAAAGCTCCTGGAACTGCAGAGGCTGATTCCTGGGCTGAAGCCAGGCTTAGGTCGTACTGCGCAGGAACAAGCTCTCTTCCAGGTGGCAGCTGTCTTCTCCACCATCGCAGCGTCTGCAGTTGGTGGGCTGCTCACTGGTTTGGTCATGAAGCTGCCTTTCATGGCATCCCCATCTGACCAGGACTGCTTTGATGATGAGCTTTTCTTTGACATGCCCTCTGACTTTGACAGCGTAGAAGTGCTTAAGACCCCCATAAGCTATGATGAAAAGATACAAATGAGCTCTATGAACACCAAAGTCGACACACTGAGGCAGTCATTATGAGTCATTCCATGTTTAAATTGTCATTACAACTATCTCACCTGTTCGCAAGTGTTATGTGTGATTTGATTATTATTCCTGTTGGAGAGATGAACCATTGACCAAAAGCTAGTTTTGTATGCAAAATGGCAAAAGggaaagtaaaagtgtaaaatatgatattacatattatatttaCACGATAGATGTAATTACATATTAAATCTGTCAGAAAACTCAAATGTCCACGAAGGTTGTTTAAAAGGGGAAAGTTtcaaaaaaatgattttccttTGTTGAAATACATACATCAgtcattacttttatttttaatgattATATGCTAAAATCATATcaatatttcattcatttttacatttagatttaaaaaaatactctaataataaataattataaactttttattattaacaaACTCCACAATATTCTTGTACAGCAGGTCCCCGAGAACCTCTGTGAtgatttcaaagtttttttcaccaaacgtttttttaataattagttGCTAAAGTCATACCCCATACACATACATTGCCAATTaggtatattttaaaaaatattcatataAAATATAACCAAATTTCGCAGCTGCCACAACAGGTACAGTTTGATTCAAAAGCTATCACTACACAGCCCTAATCATAAAGTATGTCCTGCACATGCTAGCCGAAGAGTGTAAACATCAAGCATCTGAAATACCGTTATCTCACTAACCTATAAACAACTGCTTAATGCCAAATCTCTTTACTTTTCTGGAGGTAAAGGCAGAGCAAACCTTTCTGTATTTGATTCCCTAATTAGAAAGTTGATTGATTTACACTATAAGCGcttgtattttatttactaCTTTGTTTGTCCATAGATTATTGGGCAGCTTCATCTCTTTACTAAAATAAATGGTGTGTTTGAGTCAATAATGTTGTGTCCTTAAGAAAAAAGATAATGAATACCAAATAACAGGTAAAGTTTTGTCCAGCCAGGGTTGTCATTGCCTATAAGTGCATGCCAATAGTTACAAAGGTTGAAGAACATTTTCCATCACCACAGTATCTTAACTGATAGCGTCAACAAA

Function

NR:

description
PREDICTED: ammonium transporter Rh type B-like

GO:

id name namespace
GO:0072488 ammonium transmembrane transport biological_process
GO:0015695 organic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798676.1 True 3455 mRNA 0.41 1 14206237 14209691
XM_039798677.1 False 2401 mRNA 0.41 2 14206169 14209691

Neighbor

gene id symbol gene type direction distance location
lrrn2 LOC104948560,LOC103359348 coding upstream 41758 14154131 ~ 14164411 (+)
slc6a14 slc6a14,LOC103367878 coding upstream 73397 14121615 ~ 14132772 (+)
fmoda LOC104959962,LOC103367868 coding upstream 86722 14112976 ~ 14119447 (+)
mapkapk2a mapkapk2,LOC104959968 coding upstream 160947 14006356 ~ 14045222 (+)
dyrk3 dyrk3 coding upstream 217657 13978736 ~ 13988512 (+)
LOC120557951 LOC103359350,LOC103386010,LOC102306603,LOC101466691 coding downstream 11331 14221022 ~ 14226084 (+)
LOC120557947 LOC104954762 coding downstream 32735 14242426 ~ 14248447 (+)
inpp1 inpp1 coding downstream 43316 14253007 ~ 14258285 (+)
nab2 nab2 coding downstream 57273 14266964 ~ 14277430 (+)
stx16 stx16,LOC102781320 coding downstream 115243 14324934 ~ 14333695 (+)
G38247 NA non-coding upstream 10752 14193103 ~ 14195417 (+)
G38206 NA non-coding upstream 160610 14045357 ~ 14045559 (+)
G38164 NA non-coding upstream 202982 14002962 ~ 14003187 (+)
G38163 NA non-coding upstream 213990 13991909 ~ 13992179 (+)
G38156 NA non-coding upstream 216328 13911329 ~ 13989841 (+)
G38274 NA non-coding downstream 84242 14293933 ~ 14294157 (+)
G38276 NA non-coding downstream 96069 14305760 ~ 14308441 (+)
G38317 kdm5b,LOC108235655 non-coding downstream 255283 14464974 ~ 14466684 (+)
G38331 NA non-coding downstream 283212 14492903 ~ 14494740 (+)
G38441 cdk2 non-coding downstream 398148 14607839 ~ 14610422 (+)
tfeb tfeb other upstream 677850 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 833797 13319684 ~ 13372372 (+)
per3 per3 other upstream 876837 13305415 ~ 13329332 (+)
vamp3 vamp3 other upstream 902554 13296376 ~ 13303615 (+)
spcs1 spcs1 other upstream 997911 13205469 ~ 13208258 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other downstream 17406 14227097 ~ 14233537 (+)
LOC120557952 mettl21b other downstream 125469 14335160 ~ 14337760 (+)
cdk4 LOC107684003,LOC107701179 other downstream 530918 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 555606 14765297 ~ 14857069 (+)
G38517 NA other downstream 598661 14808352 ~ 14816436 (+)

Expression


Co-expression Network