LOC120557947 (LOC104954762)


Basic Information

Item Value
gene id LOC120557947
gene name LOC104954762
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14242426 ~ 14248447 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798679.1
AGCCTTTAATTAGAGttatgtaaagcttttgatgggacagttaggtcctagagatgtggtgacaacagctgcgCAGAGGGGGCCCAATTTGATTTTTTGTCATGGGGCCCAAAATTCCTGGCGGCGCCCCTGAGCCCAGTACACTAGATGGCAATTGCAACAACGCTGTTTTATTGAACCATGGTGGAGTTCGGTGGAAGAACAGCTTTAGACAATCCCCCGTATTAACAGCCGCTCCTGTTCGTGCCCTCATAGATGAACAAATCAGCATTAAAGGATCTTTCCTGCCCCCAGAGTGTCCTGTCACAGTGTGTGCACAAATGCACAGTGATGATGGTGATCTATGGGAGGCATTTGCCCATTATAACACAAATGCAGATGGCACTGTCAACTTGACCAAGGATCATTCAGTCGGGGGTTCATATTTGGGCTGTGAGCCGATGGGACTCTTCTGGGGACTGCAGCCGGCTCCTTGTGCAAGAGAAGGTTTGAGGCTGAGGAAAAAAAACGTAGAGACTCCATATGTAATGCTCTTGTCCTTACTCGAGGGCCATGTTTCACCGAGTGAGAGGCAAAGCACTGAGCTGGCTGCAGTTATTACTGAGCGCTGGTACATGGCACCCGGCGTACGGAGAACAGAGATTCGTCAGGATGGAGTTGTGGGGACTTTGTTTTTACCGCCAGGACCAGGCCCATTTCCAGCCATGTTGGACCTGTGGGGAATGGGTGGAGGACTGGTAGAGTACCGCTCCGCCCTTTTAGCATCCAGGGGCTATGCTAGCTTGTCCCTTGCCTACATAGGGCACAAAGATTTGCCTGGCTCACTAACCCATATCAATGTTGGGGATTCATATTTCGAATCAGCATTCCACCTACTCCAAGATCATCGTCAGGTGTGTGCCGACAGAGTTGGGATCATAGGTCTCTCCTTTGGAGTCTACCTGACTCTTCGAATTGCCACTAAGACTGTTGTCAAACCAGCCTGTTTGATTTGTGTCAATGGCCCAGTAGGAAGTACCGTGAAGTTCTCCGATCCAGATGGCAGGACTGAACAATTTGAAAGTGACCAGAAGTATTGGACATATAATGATCAAGGCCACGTCAGTTTCAAAGACGTCTCCTTGCCTGCAAACCTTTCGGCTGAGAGCAAAGTGAAGATAGAGCACCTCACCTGTCCATTAATGTACATAGTGGGTGAAGATGACCTGAGCGCTTCAAGTATAGAGAGTGCCAACCTGATTGAGGAGACCCTGAAGGCTGCAGGTAAATCCCAGTTGTTCACCTGTTTGTCGTACCCCGGTGCCGGTCACCTGATTGAACCGCCTTACACACCAAATTCAAGAGCTTCCCTGTGGAGCGTCAAACCACAAAAACTGGTCACCCTGTGGGGAGGTCACCCCGCACCCCACGCTGCTGCCCAGGAAGATGCCTGGAAGAAGATCCTGGATTTCATGGAACGTAATCTGAGACGTGAactgttgattaaaaaaaatgcaggtCTGAAGGTGCCGCTCTGCAGTTGTACGATTTAGAGAGgcaagtccctccccttccggtggaccaccATGGGACCTATTTCAGAAACAAGTGTGTACGGTAGTGAATGGGGAGAGACAAAGCATTTTTGGATTCCATCTGAATTGAGCcggattacacatatgatgttcatcagtttaaaagataattttgcaagtcaaTAAAGTCTCCGTTTGTCAAAAa
>XM_039798680.1
agtacggatatattagaagttctttggttGCAGTCAGCAGATGCGCCAGAACCTGGCCAGAACTAACAGTGGCCGCAATGTTGCCAAGTAATGTTAAATCAAAATCTGgttttcaaaaaaggaaagagagaaaaggaggaaagacaaaggaaagggtgtcaaactgtaacccagtttttcacCAAGAAAGCAGACTTAACAACAGATGAGGCAGCAGCGCCCCCCTAACTGTGCCCCTCCCTGTCCCAGTGAAGAAGGTGGAGTTCGGTGGAAGAACAGCTTTAGACAATCCCCCGTATTAACAGCCGCTCCTGTTCGTGCCCTCATAGATGAACAAATCAGCATTAAAGGATCTTTCCTGCCCCCAGAGTGTCCTGTCACAGTGTGTGCACAAATGCACAGTGATGATGGTGATCTATGGGAGGCATTTGCCCATTATAACACAAATGCAGATGGCACTGTCAACTTGACCAAGGATCATTCAGTCGGGGGTTCATATTTGGGCTGTGAGCCGATGGGACTCTTCTGGGGACTGCAGCCGGCTCCTTGTGCAAGAGAAGGTTTGAGGCTGAGGAAAAAAAACGTAGAGACTCCATATGTAATGCTCTTGTCCTTACTCGAGGGCCATGTTTCACCGAGTGAGAGGCAAAGCACTGAGCTGGCTGCAGTTATTACTGAGCGCTGGTACATGGCACCCGGCGTACGGAGAACAGAGATTCGTCAGGATGGAGTTGTGGGGACTTTGTTTTTACCGCCAGGACCAGGCCCATTTCCAGCCATGTTGGACCTGTGGGGAATGGGTGGAGGACTGGTAGAGTACCGCTCCGCCCTTTTAGCATCCAGGGGCTATGCTAGCTTGTCCCTTGCCTACATAGGGCACAAAGATTTGCCTGGCTCACTAACCCATATCAATGTTGGGGATTCATATTTCGAATCAGCATTCCACCTACTCCAAGATCATCGTCAGGTGTGTGCCGACAGAGTTGGGATCATAGGTCTCTCCTTTGGAGTCTACCTGACTCTTCGAATTGCCACTAAGACTGTTGTCAAACCAGCCTGTTTGATTTGTGTCAATGGCCCAGTAGGAAGTACCGTGAAGTTCTCCGATCCAGATGGCAGGACTGAACAATTTGAAAGTGACCAGAAGTATTGGACATATAATGATCAAGGCCACGTCAGTTTCAAAGACGTCTCCTTGCCTGCAAACCTTTCGGCTGAGAGCAAAGTGAAGATAGAGCACCTCACCTGTCCATTAATGTACATAGTGGGTGAAGATGACCTGAGCGCTTCAAGTATAGAGAGTGCCAACCTGATTGAGGAGACCCTGAAGGCTGCAGGTAAATCCCAGTTGTTCACCTGTTTGTCGTACCCCGGTGCCGGTCACCTGATTGAACCGCCTTACACACCAAATTCAAGAGCTTCCCTGTGGAGCGTCAAACCACAAAAACTGGTCACCCTGTGGGGAGGTCACCCCGCACCCCACGCTGCTGCCCAGGAAGATGCCTGGAAGAAGATCCTGGATTTCATGGAACGTAATCTGAGACGTGAactgttgattaaaaaaaatgcaggtCTGAAGGTGCCGCTCTGCAGTTGTACGATTTAGAGAGgcaagtccctccccttccggtggaccaccATGGGACCTATTTCAGAAACAAGTGTGTACGGTAGTGAATGGGGAGAGACAAAGCATTTTTGGATTCCATCTGAATTGAGCcggattacacatatgatgttcatcagtttaaaagataattttgcaagtcaaTAAAGTCTCCGTTTGTCAAAAa
>XM_039798681.1
agtacggatatattagaagttctttggttGCAGTCAGCAGATGCGCCAGAACCTGGCCAGAACTAACAGTGGCCGCAATGTTGCCAAGTAATGTTAAATCAAAATCTGgttttcaaaaaaggaaagagagaaaaggaggaaagacaaaggaaagggtgtcaaactgtaacccagtttttcacCAAGAAAGACTTAACAACAGATGAGGCAGCAGCGCCCCCCTAACTGTGCCCCTCCCTGTCCCAGTGAAGAAGGTGGAGTTCGGTGGAAGAACAGCTTTAGACAATCCCCCGTATTAACAGCCGCTCCTGTTCGTGCCCTCATAGATGAACAAATCAGCATTAAAGGATCTTTCCTGCCCCCAGAGTGTCCTGTCACAGTGTGTGCACAAATGCACAGTGATGATGGTGATCTATGGGAGGCATTTGCCCATTATAACACAAATGCAGATGGCACTGTCAACTTGACCAAGGATCATTCAGTCGGGGGTTCATATTTGGGCTGTGAGCCGATGGGACTCTTCTGGGGACTGCAGCCGGCTCCTTGTGCAAGAGAAGGTTTGAGGCTGAGGAAAAAAAACGTAGAGACTCCATATGTAATGCTCTTGTCCTTACTCGAGGGCCATGTTTCACCGAGTGAGAGGCAAAGCACTGAGCTGGCTGCAGTTATTACTGAGCGCTGGTACATGGCACCCGGCGTACGGAGAACAGAGATTCGTCAGGATGGAGTTGTGGGGACTTTGTTTTTACCGCCAGGACCAGGCCCATTTCCAGCCATGTTGGACCTGTGGGGAATGGGTGGAGGACTGGTAGAGTACCGCTCCGCCCTTTTAGCATCCAGGGGCTATGCTAGCTTGTCCCTTGCCTACATAGGGCACAAAGATTTGCCTGGCTCACTAACCCATATCAATGTTGGGGATTCATATTTCGAATCAGCATTCCACCTACTCCAAGATCATCGTCAGGTGTGTGCCGACAGAGTTGGGATCATAGGTCTCTCCTTTGGAGTCTACCTGACTCTTCGAATTGCCACTAAGACTGTTGTCAAACCAGCCTGTTTGATTTGTGTCAATGGCCCAGTAGGAAGTACCGTGAAGTTCTCCGATCCAGATGGCAGGACTGAACAATTTGAAAGTGACCAGAAGTATTGGACATATAATGATCAAGGCCACGTCAGTTTCAAAGACGTCTCCTTGCCTGCAAACCTTTCGGCTGAGAGCAAAGTGAAGATAGAGCACCTCACCTGTCCATTAATGTACATAGTGGGTGAAGATGACCTGAGCGCTTCAAGTATAGAGAGTGCCAACCTGATTGAGGAGACCCTGAAGGCTGCAGGTAAATCCCAGTTGTTCACCTGTTTGTCGTACCCCGGTGCCGGTCACCTGATTGAACCGCCTTACACACCAAATTCAAGAGCTTCCCTGTGGAGCGTCAAACCACAAAAACTGGTCACCCTGTGGGGAGGTCACCCCGCACCCCACGCTGCTGCCCAGGAAGATGCCTGGAAGAAGATCCTGGATTTCATGGAACGTAATCTGAGACGTGAactgttgattaaaaaaaatgcaggtCTGAAGGTGCCGCTCTGCAGTTGTACGATTTAGAGAGgcaagtccctccccttccggtggaccaccATGGGACCTATTTCAGAAACAAGTGTGTACGGTAGTGAATGGGGAGAGACAAAGCATTTTTGGATTCCATCTGAATTGAGCcggattacacatatgatgttcatcagtttaaaagataattttgcaagtcaaTAAAGTCTCCGTTTGTCAAAAa

Function

NR:

description
PREDICTED: bile acid-CoA:amino acid N-acyltransferase-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798679.1 False 1719 mRNA 0.49 11 14243433 14248447
XM_039798680.1 True 1793 mRNA 0.48 12 14242426 14248447
XM_039798681.1 False 1790 mRNA 0.48 12 14242426 14248447

Neighbor

gene id symbol gene type direction distance location
LOC120557951 LOC103359350,LOC103386010,LOC102306603,LOC101466691 coding upstream 16342 14221022 ~ 14226084 (+)
rh50 LOC107395613,LOC108235666,LOC106513294,LOC100692870,LOC103359386,LOC101474088,LOC102304555 coding upstream 32735 14206169 ~ 14209691 (+)
lrrn2 LOC104948560,LOC103359348 coding upstream 78015 14154131 ~ 14164411 (+)
slc6a14 slc6a14,LOC103367878 coding upstream 109654 14121615 ~ 14132772 (+)
fmoda LOC104959962,LOC103367868 coding upstream 122979 14112976 ~ 14119447 (+)
inpp1 inpp1 coding downstream 4560 14253007 ~ 14258285 (+)
nab2 nab2 coding downstream 18517 14266964 ~ 14277430 (+)
stx16 stx16,LOC102781320 coding downstream 76487 14324934 ~ 14333695 (+)
si:ch211-159e12.5 NA coding downstream 91201 14339648 ~ 14345605 (+)
ankrd52b ankrd52,LOC103359366 coding downstream 167989 14416436 ~ 14435022 (+)
G38247 NA non-coding upstream 47009 14193103 ~ 14195417 (+)
G38206 NA non-coding upstream 196867 14045357 ~ 14045559 (+)
G38164 NA non-coding upstream 239239 14002962 ~ 14003187 (+)
G38163 NA non-coding upstream 250247 13991909 ~ 13992179 (+)
G38156 NA non-coding upstream 252585 13911329 ~ 13989841 (+)
G38274 NA non-coding downstream 45486 14293933 ~ 14294157 (+)
G38276 NA non-coding downstream 57313 14305760 ~ 14308441 (+)
G38317 kdm5b,LOC108235655 non-coding downstream 216527 14464974 ~ 14466684 (+)
G38331 NA non-coding downstream 244456 14492903 ~ 14494740 (+)
G38441 cdk2 non-coding downstream 359392 14607839 ~ 14610422 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other upstream 8889 14227097 ~ 14233537 (+)
tfeb tfeb other upstream 714107 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 870054 13319684 ~ 13372372 (+)
per3 per3 other upstream 913094 13305415 ~ 13329332 (+)
vamp3 vamp3 other upstream 938811 13296376 ~ 13303615 (+)
LOC120557952 mettl21b other downstream 86713 14335160 ~ 14337760 (+)
cdk4 LOC107684003,LOC107701179 other downstream 492162 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 516850 14765297 ~ 14857069 (+)
G38517 NA other downstream 559905 14808352 ~ 14816436 (+)
calcoco1b LOC104959845,LOC103376572 other downstream 616612 14865059 ~ 14874459 (+)

Expression


Co-expression Network