LOC120557951 (LOC103359350,LOC103386010,LOC102306603,LOC101466691)


Basic Information

Item Value
gene id LOC120557951
gene name LOC103359350,LOC103386010,LOC102306603,LOC101466691
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14221022 ~ 14226084 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798693.1
CTAACGTCCTCTTGTCCCGCCCACCGCTCTGCTGcagtcctctcctctcctgaaCGCTGATGTGTTACTAACTTCAGCCTCCAACTCTGCCAAAATGTTCAATTTCGGATCAAAATTGCTGGTGCTGTTACTCCTGGCCTTCCCCTGTGGATTAATATCCATCGGCCAGGTCTCCGCAGACTCCGACTCTGCTGAGGACATTGCTGAGGACCCAGATGCTGCAGTagatgaggaggaagatgatgaagaggtgCTCGTTGAGGAAGATCAGATACAACCATCGgaaggagaggaagaggactCTGATAAACTGTTAACATCTCACCCTGATGCCGACACAACCATCCTCTTCATGACAGGAGAAGAGTTTCCTGCCAATGAAATTGTGAGGTTCCTGGTGGGTTTCACCAACAAGGGAGGTCAGGATTTCACCGTTCAGTCGTTGGAGGCCTCCTTCCGTTACCCCCAAGACTTCCAGTTCTACATTCAGAATTTCACAGCGTTGCCTCTGAGCACTGTAGTGCAGCCTCAGTCTCAGGCCTCCTTTGAGTACTCCTTTATCCCAGCTCAGCCCATGGCAGGTCGCCCATTTGGTCTTGTTATCCTCCTCAACTATCTTGACACTGAGGGCAACGTGTTCCAGACTGCCATTTACAACCAGACTGTCACCATCATTGAGCTAGAAGAGGGACTGGATGGGGAAACaatGTTTATGTACATCTTCCTGGTTGGACTGGTGGCCCTGATGCTCTTTGGAATGTACCAGGTCCTGGAAACGAGGACAAAAAAGAGAATCCCAGTAAAAATAGAGAAGGGCACTGGTGGGATGAACGATGTGGACATCAGCTGGATTCCTCAGGAGACTCTCAATGTCATGAACAAGGCTTCCCCTAAAGCATCTCCACGGAAACGAACCAATAGGGCAGCTGGAGCAGATCAATAAAACTGTCCTCTTCCATCCATCATCATACTGTCCATCAGACTTTCAAAGCTCATTTCCTCGCCACGGTAACCAGATTACCCAGCCTGAGCAATGTGTTTGAGATGTTTGTATGGATCTCAGCCTCTCATCCTGCTGCTCTGCTGGAACCTCGACCAAAGAGCatcctgaactctactggtctGATCAGGGCAAGACCATTTAGACACTAACAGGACTGAACTACAGTTCATTTTTTAAAGGGACATTCCTATTTCATCTTTTGAAAAAGATGAATCCCCTCCTCTCCAATGTAAACACCATTGTGCCTTATCTGTACTGTATCTGTGGTGCCTGCAAAGACTCAATGTTAAGAAAAAAGTATATGCAATTGATTAAAGGGCTGCCCACTGATACCCCTCTGCTTTTAACATCCActtacatgtagtttataaaattaCAAATTTAGTTTTTCAATGGAGCAATGGCAGCTGCAGTTACAACAACCATTAAAACAGTGTTCTCTGGAGGTTTCTGTAGGCTACATTACCCATTTGTTTTCTCACCTTACTTTTGTATTATATCTGTTCGTTGGTGGAGCATTCCAAACTATTTACTAAGTGCCAGTGGTGCAATCTGTCAGATTGCATGCCATTacttttgggggaaaaaaagttttttcaaaaacaataaaaaggtgAACCGAG

Function

NR:

description
PREDICTED: translocon-associated protein subunit alpha-like

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13249 SSR1; translocon-associated protein subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798693.1 True 1626 mRNA 0.46 9 14221022 14226084

Neighbor

gene id symbol gene type direction distance location
rh50 LOC107395613,LOC108235666,LOC106513294,LOC100692870,LOC103359386,LOC101474088,LOC102304555 coding upstream 11331 14206169 ~ 14209691 (+)
lrrn2 LOC104948560,LOC103359348 coding upstream 56611 14154131 ~ 14164411 (+)
slc6a14 slc6a14,LOC103367878 coding upstream 88250 14121615 ~ 14132772 (+)
fmoda LOC104959962,LOC103367868 coding upstream 101575 14112976 ~ 14119447 (+)
mapkapk2a mapkapk2,LOC104959968 coding upstream 175800 14006356 ~ 14045222 (+)
LOC120557947 LOC104954762 coding downstream 16342 14242426 ~ 14248447 (+)
inpp1 inpp1 coding downstream 26923 14253007 ~ 14258285 (+)
nab2 nab2 coding downstream 40880 14266964 ~ 14277430 (+)
stx16 stx16,LOC102781320 coding downstream 98850 14324934 ~ 14333695 (+)
si:ch211-159e12.5 NA coding downstream 113564 14339648 ~ 14345605 (+)
G38247 NA non-coding upstream 25605 14193103 ~ 14195417 (+)
G38206 NA non-coding upstream 175463 14045357 ~ 14045559 (+)
G38164 NA non-coding upstream 217835 14002962 ~ 14003187 (+)
G38163 NA non-coding upstream 228843 13991909 ~ 13992179 (+)
G38156 NA non-coding upstream 231181 13911329 ~ 13989841 (+)
G38274 NA non-coding downstream 67849 14293933 ~ 14294157 (+)
G38276 NA non-coding downstream 79676 14305760 ~ 14308441 (+)
G38317 kdm5b,LOC108235655 non-coding downstream 238890 14464974 ~ 14466684 (+)
G38331 NA non-coding downstream 266819 14492903 ~ 14494740 (+)
G38441 cdk2 non-coding downstream 381755 14607839 ~ 14610422 (+)
tfeb tfeb other upstream 692703 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 848650 13319684 ~ 13372372 (+)
per3 per3 other upstream 891690 13305415 ~ 13329332 (+)
vamp3 vamp3 other upstream 917407 13296376 ~ 13303615 (+)
spcs1 spcs1 other upstream 1012764 13205469 ~ 13208258 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other downstream 1013 14227097 ~ 14233537 (+)
LOC120557952 mettl21b other downstream 109076 14335160 ~ 14337760 (+)
cdk4 LOC107684003,LOC107701179 other downstream 514525 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 539213 14765297 ~ 14857069 (+)
G38517 NA other downstream 582268 14808352 ~ 14816436 (+)

Expression


Co-expression Network