LOC120557984 (bhlhe40,LOC103376587,LOC101063749)


Basic Information

Item Value
gene id LOC120557984
gene name bhlhe40,LOC103376587,LOC101063749
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15302830 ~ 15306602 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798751.1
ATCGAGAATCGCATGGACTAActtgaaaacattttcacacgCAAAATAATCTTTACGTTAGCACGACAAGTAGTAAATATAATGAGAAATTAATACTAACCgttacagttgtttttttagttttttttatttaagcatTTTAGTGCATTTCACTAACTGCTGCTTTTGCCAACTTGTTCTTCATCACGAGTAAATAGATGCGTTTTTATTTGTGACTGCATTGGAAAAGTACCTCGGCTTTACTGCGTAATTGAagaaaaaaccaaaaacaacaatggagcGAATTCCAAGCGCGCAACCGCCTCCTCTGTCCAAACACCAGGCTGATCTGTCAGACGTGCAGGGGATGGATTTCCCGATGTATGTTTATAAACCCAGACGAGGactgaagagaggagaggagagcaagGACACCTACAAGCTGCCTCACAGACTTATTGAGAAGAAAAGGCGTGACCGGATAAACGAGTGCATCGCTCAGTTGAAAGATTTATTACCCGAGCACCTGAAACTCACTACTCTGGGCCATCTGGAGAAGGCTGTGGTTTTAGAGCTTACGCTCAAGCACGTGAAAGCCCTCACCTCTCTTCTGGAGCAACAGCAGCAGAAGATCCTCGCTCTGCAGAATGGCATGCAAATTGAGCAGTCTTCTGTCAACCAGGAGAAGTCAGAGGAGCTGTTCTGCTCTGGCTTCCACATGTGTGCCAATGAGATGCTTCGGTATCTGGGCAATCATGAGACTGATGGAGACTTCACACCATCCCATGTGATCAATCACCTTCACAAGTTAGCTGCAGAGGTGCTGCAAAGTCCGGTCCGACCCCACACTCCTCTCAGCCCTCAACCTGAGGAAATCCCTGCCTACCACCAGCACCAACCTCACAAGGAGATGCCCGCCAGCTTACCCCCGAAACCCAGGGAGGGCTATGGGAGGAACTGTGTGCCTGTCATCCAGCGGGCGTACGCTCCACTAAGCAGTGAGCAGAGTGGCAGTGATACGGATACAGACAGCGGCTATGGGGGAGAGCTGGAGAAGACCGAATCTGGGGCGCCACAGGGGTGTCCAGATTACTACGGTCAGGAGAGCCATCTGAAGCGAGCGCTGGGCGAGAAGCAGAGCTCCAGCATCAAGCAGGAGGATGACGAGCCATGCTACAAACGACCCCGGGGAGAGTCGTCTGAGGATGAGCTGCTCTCAGGTGGAGAATCATCAACATCATCGTCCTCTAGCGGTTATGGCAATTACATGAGCATATCCCCCAACCATCCAACTCCTCCACATCCCCTCTGCATGCCTTTCTACCTAATTCCACCTTCTGCTGCAGCCTACCTGCCAATGCTTGAGAAATGCTGGTACCCTGGGTCCGTGCCCATGATTTACTCTGGCTTGGGAGTCTCTGCAACCACCATGTCCAGCGAAAGACCATCTCCACCTCAGCTAGTGTTGTCTCCCAGGGGAGGCTCACCAGCCCCAGCCATATCTCAGACCCCCATGGACTCCCCTGCCCTCCTTCAGGCACTAAAGCAGGTACCACCCCTCAACCTGGAAACCAAAGACTGAAAGATAAGAGAACAGGGGTGAAGAGATTATCCTGTTCTAGTACCCAGGAGTAGAGACAGTAGTAGGAATGAGAACGTGACTGAGCCTTTCCATAATCCATCCTCATTCCTGTCCTCTGTTCCTCAGCCAGGAGGTCAAACCGAAAACTAGAGGACTTGTAGAAATAATcaagaggagatggaggagaggcAACATCTGTCCACACTCGGAGGATGCAAAGCTCTGGTTGAATGTTAAATGCTGGTATTACAAATGTATCATATAAACTGGACCTgctcgcacgcacacacacacacacccacacacacacacacacacacacacacacacacacacacacacacacttggttgAATGTAAAGAAAGATACTTTTTAGACGCTGCTGTTAAAGTATAAACGCTGATTACACTGATGCATCTCACTTGTAGCTTTCGCAATAGAGACATGCCATCTTTGTATTTTAGAAAGTGTTGCACCAAATGTTAGCGGTAATATTCCCAAAGTTTGTTGCCTATGTCCCTTAGGTCACGATGACTGGCTCCATAAGATACAAGGGTTTCCTTAAGTGTGTACAGACAAGGGTACACCCAATGCACAGATGATGGAATGGGCCACCACATGaacacactgaatgagaagTCTTGTTTTTCATTGACAAACATACAGTTAAGATGGCTTTTCTGTAATTATTGTTCATAGACTTCTTGTACATTTCTATTTTTGATACCTGTTCTCGCACTCTGCCTCTCCGGAAGGATAGAAGGTGGGCAGAGTGTGGACAATTGTACGTTGTGTACTCAGAAACTGTGTACATACTGTAGCACTGTGCTGGACCTGCATACTCAACATCTGTTTCTGCTCAAGTCAAACCTGGTGTTTGTTCTTGCTGTTGCCTTTTACTTTGTGAAAAGCTGATAAATTTCAGATGTTTATTCTCTGTACTATGTATGAATACTGGAGTCAAAggagtgaggaggagagaagctGAATGTAAAAGTTTTACCCGAAGACTAGTTTTCTATAGAAAGAGGTACTTGAGATTTTATATTTTAGGACCTACATGAAAGATGTTTGATGTACATATTTTGTCTATAAATGTTGGTATACATTATATAAGTGTATTAAAGTATTTTTCTTTCCCGTGGAAAA

Function

symbol description
bhlhe40 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within circadian regulation of gene expression; locomotor rhythm; and negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; digestive system; immature eye; nervous system; and pleuroperitoneal region. Orthologous to human BHLHE40 (basic helix-loop-helix family member e40).

NR:

description
PREDICTED: class E basic helix-loop-helix protein 40

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03729 BHLHB2, DEC1; class B basic helix-loop-helix protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798751.1 True 2711 mRNA 0.46 5 15302830 15306602

Neighbor

gene id symbol gene type direction distance location
LOC120557980 LOC103376586 coding upstream 4346 15214633 ~ 15298484 (+)
LOC120557981 LOC103376584,LOC104955004,LOC108235576 coding upstream 94811 15197507 ~ 15208019 (+)
si:dkey-28n18.9 LOC103376583,LOC102799394,LOC100705573,LOC104955032 coding upstream 137103 15159592 ~ 15165727 (+)
LOC120556705 NA coding upstream 143432 15157708 ~ 15159398 (+)
LOC120556827 LOC103376578 coding upstream 184672 15019473 ~ 15118158 (+)
slc4a8 LOC104954932 coding downstream 11647 15318249 ~ 15349263 (+)
si:dkey-195m11.8 LOC103376590 coding downstream 53061 15359663 ~ 15375612 (+)
LOC120556644 NA coding downstream 146591 15453193 ~ 15455490 (+)
LOC120556642 mettl7a,LOC102782606,LOC101484749,LOC103385978,LOC103147640 coding downstream 149005 15455607 ~ 15456964 (+)
LOC120556683 LOC102785850,LOC100702077,LOC102299981,LOC103376602,LOC102207065,LOC102237428 coding downstream 300080 15606682 ~ 15626045 (+)
G38670 NA non-coding upstream 51897 15250569 ~ 15250933 (+)
G38538 NA non-coding upstream 325926 14915678 ~ 14976904 (+)
G38526 NA non-coding upstream 438723 14863322 ~ 14864107 (+)
G38495 NA non-coding upstream 588313 14712784 ~ 14714517 (+)
G38496 NA non-coding upstream 590696 14710726 ~ 14712134 (+)
G38738 scn8a,LOC106518053,LOC106572732,LOC103465359,LOC108440919 non-coding downstream 90127 15396729 ~ 15397507 (+)
G38762 NA non-coding downstream 155699 15462301 ~ 15463452 (+)
G38788 espl1 non-coding downstream 235651 15542253 ~ 15543372 (+)
G38829 NA non-coding downstream 319709 15626311 ~ 15626840 (+)
G38832 NA non-coding downstream 337459 15644061 ~ 15644399 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 428371 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 445761 14765297 ~ 14857069 (+)
G38517 NA other upstream 486394 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 545471 14740609 ~ 14757359 (+)
LOC120557952 mettl21b other upstream 965070 14335160 ~ 14337760 (+)
G38834 NA other downstream 338909 15645511 ~ 15647851 (+)
crbn crbn,LOC102793823 other downstream 616719 15923321 ~ 15937097 (+)
ccdc174 ccdc174 other downstream 658800 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 743076 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 842523 16149125 ~ 16158362 (+)

Expression


Co-expression Network